RNA id: XM_043255140.1


Basic Information

Item Value
RNA id XM_043255140.1
length 4065
RNA type mRNA
GC content 0.58
exon number 18
gene id tp53bp2a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2153422 ~ 2166028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACTCGCTCTCCCCTCAGCCGTGTGCGTCCTCGAATAGTGCTAAATATATGTggcaaaacaaagaacaaaattattttctaaGCGAAAACcggcatgtttttttctgtcgcCATCTTGCTCCGCCCCCAGGGTTTTCCAGAGCGGTGACGTCACGCTCGCGAGCAGCAGCAACAGGCGTCAAGCGGCGACGGGAACCAGAGGCAGGGCTCTCAAAGACGACAAAACGCTCCGAAGTGTAGTCGGAGGTCCCGAGGAAGCGCACCCGAAACCCCCCTCACGCGCCCCGGCGGTCGGTGAACACGTCGTCGATGTTCTCTGAGAGAAAGTCTCGCGGAAGGAAAGTTTGGGAAGGCCTCTGACGTCACGCCTCTCGGGACGCTCTCGTCTCAAACGGGACGGCTTTTCTGAGCATAACATCAGCGACTTTAAACTCGATCAAAGCAGCGAACAGCTCCACGGTTCGACCCGGACCGAATAACGTCCTCAGCGCGACGCGAAAATGATGCCGATGTTCCTGACTGTGTTCCTCAGTAACAATGACCAGCACTTCACGGAGGTGCCCATCACGCCCGAGACGGTGTGTGGAGACGTGCTGGAGCTGTGTCGGGAGCCGGCCGAGAGCAGCTGTCACCTGGCTGAGGTGTGGAGAGGATCGGAGAGGGCGGTGGGCGAGAGCGAGAAGATGATGGATCTGCTGCTGCAGTGGGGCCAGCAGAGGCCCGAGGTTCGCTTCTTCCTGCGTCGAGGCAGAGCTCCCAACCTGCTGACAGACTCCAGGACCTGGAATCAGAAGAGGAACGGCGTCAAGAAGCCCGCGGACAGACGGCCGGagaatggaGTGAGCAGCCCGTGGATGGACATGACTCTAGCAGAGCTGCAGGACATGTCTGTCAGACAGCAGCGTCAGATTGATGCCCAGCAGCAGCTCCTGGCCTCCAAGGAGCAGCGCTTGCATTTCCTGAAGCAGCAGGAGCACAGGCAGCTGCAGACGTCCTCGGAGCAGAAGAAGCTGCAGCATCTGAGGGACACGGTGGAGAAGCAGGAGGCGCAGCTGAAGATGGTGCGAGCTCTGAAGGGACAGGTGGAGCAGAAACGCCTCAGCAATGGGAAGCTCGttgaGCAGGTGGAACAGATGAACAATCTGCTCCTTCAGAAGCAGAAGGAGCTGGTGGTCGCCGTGTCTAAAGTGGAAGACCTGAACAAACAGCTGGAGACTCTAAAAAACGGCCAGCTGGATGCTCTTCACAGTAACCACAGCTCCGTGGCCGAGCTGGACAGACTCTACAGGGAACTACAGATGAGGAAGAACTTGAACCTGGAGCAGAGCGCTAAACTGCAGCAGCAGAGGGACAACCTCAACAAGAGGAACCAGGAGGTGGCCAGCATGGACAAACGAGTCAGTGAGCTGCGAGATCGCCTCTGGAAGAAGAAGGCTGCCCTACAGCAGAAAGAAAACCTTCCCCTGCCTTCAGAAGCCCAGACAGCGCAGCAGACTGGACCGTCCCGCGTGGCTGCTGTCGGCCCTTACATCCAGTCCTCCACCATGCCCAGGGGCCCCATTAAACAGGACCTGCTCCTCAAACACGCTTACCCAGACGGCACAGCGACTGCACCGCATCAGGACAAGAGCAGTCAGTCAGGTAAGATGTCCTCAAAGATGTCTAACTGGAGTTCTGGCGCTAACCTTGGGTCGTCCAGTCTGCCCCGCATGGTGACCCAGGCATCTAAAAACCAAGATAACACAGACGTGCTGAAGCGGGACCCCAGGGTGCGTCCGGTCTCCATGTTTGAGTCCGTTGATCCACCAGCAGCTTCTTTACGGAAGAACCAGAGCAGCGAGGACCTTGCCAGAGACGCCCAGAGCCCTGTCAAGAACACGGTCAAGGTTCCTCCTCCAGTTCCCAGTAAACCGAAACAGGCCAACCTTCCTTCTGGTGGCCAGATGGGATACGGCAAAACGGCCGGCACCTTCCCTGGGAAGAGCAAGTCTTCCGCTCCGCAGCCGCCCGCTGGCGTCCAGTCTGGTGGTACTTTACCCCTGCCCTCCAAACTGGAGGCTCCCCCGGCGGCCACCGTACACCCCTTCAGCGCCGAGCCTCCTGGAGCCAAAGACTCCGGCGGGCAGCTCCTGCACAAGCCACAGATGCTGACCACCAGCTCCATCTACAGCATGTACACACAGCCCCAGGGCGTGCAGGGAGCGCTGAGCCGATCCCAGAACCGCGGCAGCAACTTCATCAGCGTTTATGGGAAGCCAGTGACCTCCTCAGGCCAGCAGTCCCAAAACCAGCACCCAGAGAACCCGTACCTGGACTCATCCAGTGGCCCCGAAGCAGAGAAGGACCCCAGCACTGGAACCTCCGAGAGTGAGCGCATCCCCAGACCTCTGAGTCCCACCAAACTGCTTCCCTTTATCTCCAACCCCTACCGGCACCAGAGCGACGTCGACCTCGAGGCCCTCAGGAAGAAGCTCTACAATGCCCCCAGACCCCTGAAGAAACGCAGCTCCATCACGGAGCCCGAGGGCCCGGGCGGCCCCAACATCCAGAAGCTGCTGTACCAGAAGACGACCCTGGCCGCGATGGAGACAGCGGTGACTCCTCCAGGAGAAGAGGAGAAGGAGCCGCCAGCAGATCCTCCGAGAGCAGATGAAGCAGCTCTGGAGAGAGCGGAGCAGGCAGTTCCTGAGCCGCCGGAGCCCGCAGCGGCCCCTGAGATCCAAGCAGAGGACATGCTTCCTCCGCCTCCTCCACACCCGGCCCCGCAGCCCCTCGCTCCGCTCTCACCTCCACCTCCTCAGCCCGACAgccctcctcctccacctcctcctgaCAGCTTCCTGGAGGACTTCCCTCCTTATCCTCCTCCTCCGTACCCCAGCGGCGCCGAGCACGAGGCTCCAGAAGACAGCTTCAGCATGAAGCCTCCGGAGGTCACCGGACAGGTCCCCTCTCCACCGGGTAAGAGGACGAATCTGCGCAAGGCCGGGTCCGAGCGCATCGATCACAGCATGAGGGTGCGCTTCAATCCTCTGGCTCTGTTACTGGACTCATCGCTGGAGGGAGAGTTCGATCTGGTGCAGTGGGTCATTTACGAGGTGGAGGACCCCAGTCAGCCTAACGACGAGGGAATCACGGCGCTGCATAACGCAGTGTGTGCCGGTCACACAGACATCGTCAAGTTCCTGGTGCAGTTTGGAGTCAATGTGAACGCCGCTGACAGTGACGGATGgacgCCCCTGCACTGTGCCGCGTCCTGTAATAACGTGCAGGTGTGTAAGTTCCTGGTGGAGTCGGGGGCGGCCGTGTTTGCCATGACCTACAGCGACATGCAGACGGCAGCGGATAAGTGTGAGGAGATGGAGGAGGGATACACTCAGTGCTCGCAGTTCCTCTACGgcgtGCAGGAGAAGATGGGCATCATGAACCGCGGGGTGGTGTACGGTCTGTGGGACTACGAGGGCGAGCAGGACGACGAGCTGAGCTTCAGAGAGGGTGACTGTATGACGGTGCTGCGGCGCGAGGACGAGGACGAGACCGAGTGGTGGTGGGTGCGCTCGGCCGCCGGAGACGGATACGTGCCCCGCAACCTGCTGGGGTTGTACCCGAGAATTAAACCCCGTCAGCGGAGTCTGGCTTAAGTCCTTCAGAGGGAGCAGACTCTCGTCTTCCTGTCTCTTCTGTAGTTGTGTTCTGGATGTTACACTCTTTTTGTCTTCTTTATACCACAAAATAATTGCATAGAAATTAGCCGTTTAGATCGtactttatatttgtatatcaaGTTTTTTGTAATAGTTGCCTGTGTTTTGTATGGCAGGTATTTTGCATACAGTGTTCTGTCGGTGATTTCTTGAAGAGTCGTACCGTGTTCGTAACGTAGGGTTCGTACGGTGAGCTCTGGATTCAGATCTAGTGATTTACAGCAGCAATCTCAAAAAATGGCTAAAGACACAgcttttattatacattattctCCTGCATCTTCCACATCCTCGTGGACAAATCAGCTGCAGGCCAAATGTAACCTgatcaaaaatgattaaaaacactgTGAAAGGTT

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0008134 transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133390 lncRNA upstream 77596 2075552 ~ 2075828 (+) True G90094
TU133376 lncRNA upstream 99578 2053597 ~ 2053846 (+) True G90089
TU133375 lncRNA upstream 101119 2052035 ~ 2052305 (+) True G90088
TU133308 lncRNA upstream 117587 2035337 ~ 2035837 (+) True G90041
TU133297 lncRNA upstream 118857 2017183 ~ 2034567 (+) True G90034
XR_006252343.1 lncRNA downstream 72914 2238942 ~ 2240047 (+) True LOC122356498
TU133438 lncRNA downstream 98718 2264746 ~ 2284358 (+) False LOC122356772
TU133534 lncRNA downstream 119497 2285525 ~ 2286244 (+) True G90206
XR_006252340.1 lncRNA downstream 137457 2303485 ~ 2304076 (+) True LOC122356495
XR_006252325.1 lncRNA downstream 143853 2309881 ~ 2311135 (+) True LOC122356488
XM_043255112.1 mRNA upstream 59396 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255113.1 mRNA upstream 59396 2076850 ~ 2094028 (+) False wu:fc17b08
XM_043255114.1 mRNA upstream 59396 2087538 ~ 2094028 (+) False wu:fc17b08
XM_043255209.1 mRNA upstream 93858 2054989 ~ 2059566 (+) True degs1
XM_043255204.1 mRNA upstream 107154 2039482 ~ 2046270 (+) True fbxo28
XM_043255219.1 mRNA downstream 592 2166620 ~ 2175433 (+) True LOC122356476
XM_043255824.1 mRNA downstream 9981 2176009 ~ 2180829 (+) True cutc
XM_043255193.1 mRNA downstream 20230 2186258 ~ 2195187 (+) True LOC122356458
XM_043255194.1 mRNA downstream 20322 2186350 ~ 2195187 (+) False LOC122356458
XM_043255116.1 mRNA downstream 33956 2199984 ~ 2217020 (+) False abcc2
TU133255 other upstream 280833 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 311316 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 550733 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 683289 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 1013229 1139159 ~ 1140195 (+) True G89770
TU133396 other downstream 10125 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 303917 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 816531 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 816715 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 885954 3051982 ~ 3055118 (+) False LOC122356070

Expression Profile