RNA id: XM_043255160.1


Basic Information

Item Value
RNA id XM_043255160.1
length 2798
RNA type mRNA
GC content 0.56
exon number 23
gene id nvl
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2060300 ~ 2074778 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAAAGACCGTCCTGAGCTCTCCAGGCCTGCGGGCGGCGCTGCGGACACCGGCGCTCAGCTCCTCCCCCTCTCCTCCtcagctcctcctcctccgcgtGCACGGCGGCAGCGTGAAGAAGAGGCGAGCTTTCTCCGGGGCTTCATGAGGACTGAGTGATGAAGAACCGCGGAGCTTGTAACGTAGACCAGAGACTCAAACACAGAGTCGAGCAGTACCTGAAGGGCCACGGCGAGCGGTATGTGGACGTCTCGGCGATGGCCTGCGAGCTCCAGCAGCGCTTCCGGATCGAGTACGGCCGCAGGAACAGGACGGCTTTCCGGATTCAAGTGGAAAAAGCGCATGCGGCGATCTGCAGCGAGTCTGATGTCTCTGTCCTGGAGGACCAGCATTTGGCCAAAAGAGCGAGACGCAAGAGAGAGGACGGGGAAGAAAGTCTCGTCACTGAGAACAGCACAGACAGCGAGGATGATATTCCTGAGCACGAGCACACTAACCACATGAACAGCTCTCTGACCAGCCTCTATCAGAGAGGAGCGACCCCTCAGAAGAGCTGGACCATCGACAAGACCGGAGACCGAGAGCAGGACAACATCTTCATCGATCTGTGTGAGGAAGAGTCCTCCAGCACCGCGCAGAGAGATTCATCGGCGCTGGAGAAGGACAGGAAGTCAGCGAGCAGAAAACTGAAgcgagagaagaagaagaagcagcaggaggaggaggagatcaCTGCGGCGATTCAGGCTAAAAAGAGTAGGAGTCACGAGCTGCAGCACTCGTCGGTGAAGTTCGAGGACTTCGGCGGGAGCGAGGAGACTCTAGAGgAGGTCTGTAAGCTGCTGATCCACATGAGACACCCCGAGGTGTACCAGCGGCTGGGAGTGGTTCCTCCGAGAGGATTCCTGCTGCACGGCCCGCCGGGGTCCGGGAAGACGCTGCTGGCTCAGGCTGTGGCTGGGgaggtGGATCTGCCCATGCTGAAGGTCTCGGCTCCGGAGCTGGTGTCCGGAGTCTCCGGGGAATCGGAGCAGAAGCTGCGGGAGCTGTTTGAGCAAGCCATAAGCAGTGCTCCCTGTATCCTGTTCATCGACGAGATCGATGCCATCACTCCAAAGAGAGAGGTCGCGTCCAAAGACATGGAGAGGAGGATGGTGGCTCAGTTACTCACCTGCATGGACGACCTCAACTCGTTATCAGAACCGGCTCAGGTGTTGGTCATCGGAGCCACTAACCGGCCGGACTCTCTGGACCCGGCCCTGCGCAGAGCCGGCAGGTTTGACCGTGAGATCTGTCTGGGCATTCCTGATGAAGCCGCGAGACTCAAGATCCTGAAGACACTGTGTCGTAAGATGACGCTGCCGGAGGAGTTTGACTACAGACAGCTGGCGCGTCTCACGCCGGGTTTTGTGGGCGCTGATCTGATGGCGCTGTGCCGAGAGGCGGCCATGAGCGCCGTCAACAGGATCCTGCTTCAGCTGAACAGTTCAGACGGCACGCCGCCGAAAGCAGACCTGGAGCAGCTGCTGTCGTTGCTGAAGACGAGCGAGTCTCTGAGCGAGGAGCAgctctctggactctgtgtgcTCATGTCGGACTTCAGGGCGTCGCTCGCCAGAGTCCAGCCGTCTGCCAAGCGCGAGGGCTTCGCCACGGTCCCGGACGTCAGCTGGGAGGACGTGGGAGCGCTGCAGGACGTCCGCGAGGAGCTCAACATGGCCATCATGGCTCCCATCCATAACCCGGATCAGTTCCGAGCGCTGGGTCTGAGCGCCCCGGCTGGAGTGCTGCTGGCCGGACCGCCCGGCTGCGGGAAGACCCTTCTGGCCAAGGCCGTCGCTAATGAATCAGGCCTGAACTTCATCTCTGTCAAGGGTCCTGAGCTGCTCAATATGTATGTGGGCGAGAGCGAGCGGGCGGTCCGCCAGGTGTTCCAGAGAGGACGCAACTCGGCGCCCTGCGTCATCTTCTTTGACGAGATCGATGCGCTGTGTCCTCGCCGCTCCGAGCATGAGtCAGGAGCCAGTGTTCGTGTCGTGAATCAGCTCCTCACTGAGATGGACGGCATGCAGAACCGCCAGCAGGTTTTCATCATGGCCGCCACCAACAGACCAGATATAATTGATCCCGCTGTGCTCAGGCCAGGACGACTGGACAAAACTCTGTATGTGGGTTTACCGCCGGCCGCAGACAGACACGCCATACTAGTCACTATTACTAAGAGCGGCACCAGACCACTTCTAGATTCAGATGTCAGTCTTGAGGAAATTGCCCATGATGCTCGTTGTGAGAGTTTTACaggagCAGATCTGTCGGCGCTGGTGCGAGAGGCGTGTGTAAACGCTCTGAGAGGTCACCTGAGCTCAggaccagcacacacacacacagAGCCAGTGAAGGACATCCGAGTGAGCCGAGTTCACTTTGAAGACGCCTTCAAGAAGGTGCGGCCGTCGGTCTCCAAGAAGGACCAGTTAATGTATGAAAAACTGAAAGAGAGCCTCACAAGAtgacagctattttttttttgatattctgtgcttaaaaaaataaatagaaagaaaataacCTGGCTGTGCATTTGTCTGGATTTCACCAACATTACTTTACATGAAAGATTGTAATGAAGTTATACGCAATAAagtgtatgtaaaaaaataaatacgtttgTTACACAGCAGATTACGTGAAGATGAACAGTAACGGTCAAGATCTTGACAATTTGTACAAAAACCTGATTAAGTAGGAGAAAAGTAGATTGCCTGTTGTTTTTGGACCAGTATCTTATAGTGACTGAAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K14571 RIX7, NVL; ribosome biogenesis ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252336.1 lncRNA downstream 5409 2052031 ~ 2054891 (-) False LOC122356492
XR_006252337.1 lncRNA downstream 5409 2052031 ~ 2054891 (-) True LOC122356492
TU133453 lncRNA downstream 6340 2053757 ~ 2053960 (-) True G90150
TU133360 lncRNA downstream 152762 1907316 ~ 1907538 (-) True G90078
TU133358 lncRNA downstream 172691 1887406 ~ 1887609 (-) True G90076
TU133475 lncRNA upstream 75539 2150317 ~ 2166300 (-) True G90166
TU133479 lncRNA upstream 77809 2152587 ~ 2155188 (-) True G90168
TU133496 lncRNA upstream 116133 2190911 ~ 2192963 (-) True G90180
TU133512 lncRNA upstream 139759 2214537 ~ 2214869 (-) True G90193
TU133513 lncRNA upstream 139759 2214537 ~ 2215301 (-) False G90193
XM_043255108.1 mRNA downstream 23189 2012695 ~ 2037111 (-) False heatr5b
XM_043255109.1 mRNA downstream 23201 2012695 ~ 2037099 (-) True heatr5b
XM_043255110.1 mRNA downstream 23221 2012695 ~ 2037079 (-) False heatr5b
XM_043255107.1 mRNA downstream 23221 2012695 ~ 2037079 (-) False heatr5b
XM_043255111.1 mRNA downstream 26275 2012695 ~ 2034025 (-) False heatr5b
XM_043255117.1 mRNA upstream 18697 2093475 ~ 2146596 (-) True slit1a
XM_043255230.1 mRNA upstream 364428 2439206 ~ 2457063 (-) True LOC122356487
XM_043255138.1 mRNA upstream 384102 2458880 ~ 2466266 (-) False LOC122356433
XM_043255137.1 mRNA upstream 384102 2458880 ~ 2466266 (-) True LOC122356433
XM_043256325.1 mRNA upstream 403805 2478583 ~ 2480329 (-) True gsta.1
TU133318 other downstream 368365 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 503297 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 1882980 123194 ~ 177320 (-) True G89543
TU132495 other downstream 1992424 67327 ~ 67876 (-) True G89537
TU132489 other downstream 2011501 47522 ~ 48799 (-) False LOC122356184
TU133469 other upstream 77059 2151837 ~ 2245078 (-) True G90161
TU133689 other upstream 509418 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 551550 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 915640 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2598188 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile