RNA id: XM_043255191.1


Basic Information

Item Value
RNA id XM_043255191.1
length 2842
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122356456
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2446050 ~ 2450413 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTGCGTGACGTCATACGCCTGCGCCGCTCTCCTCTCGGCTCAAGACGTCTGGTGAAGCCACTGAGATCCATGCCATGAATAAAAAGATGGCGTTTATTAAGGAGGAGAATGAAGACTTGAAGATTGAAGACACTTTCAGAGTGAAACATGAAGATATTGAGGAACAGACCGAACTGGTAGAGTTGAAAGCGGAGAAGGAAGTACTCAATGAAGTGAAGGAGGAAAACCGTGCTTTCATAACTGAAGAAATATCTTCTAGTCGCTCACGGCCTGAAAATACTTCCTCGCGAAATATAGCTCAAACGACAAGAGAGGAttctggagagaagcctttcaaATGCCAGCAGTGCGAAAGGAGTTTCCGATTAAACAAATACCTTAAGAATCACATGAGAATTCACTCAGAAGACAAGCCCTTCACGTGCCATGATTGTGGAAAGAGTTTTTGTCATAAAGGTAGTCTCAAAACTCACATGAGGATTCACACCGAAGAGAAGCCTTACTCGTGCCCGCAGTGCAGAATGGATTTCGCATATAAACCGACCTTCAACGCTCATATGAAAAGTCACACCGGAGAGAACCCTTACACCTGCAAACTGTGTGAGAAGAGCTTCTCGCAAAAGGGAAATCTCAAATATCACCtgagagttcacaccggagaaaaGCCTTTCACGTGCCCCGACTGTGGAAAGTGTTTCAGTCATAAAGTAAGCCTCAAGTCtcacatgaggatccacaccggagagaagccttactcCTGCCCTCAGTGCGGGATGAAGTTTACATATAAGGAGTCCTTTGATATCCACCtgagagttcacaccggagGAAACCGTTACACCTGCAAActgtgcgggaagagcttctcGCAGAAAGGAAATCTTAAGTAtcacatgaggatccacaccggagagaagccgttcacGTGTGAGCAGTGTGGAAGGACTTTCAGGTACAAGGTGACCTTAAACAAGCACACCAGGATTCACTCAAGAGAGAAGCGTTTTATATGTCATCAGTGTGAAAAGAGTTTCACCGACAAGAAAGACCTCAAGAACCACGTGGCGACTCACATCGGGGAGAAGCCTTTCATGTGCCCCCTTTGTGGAAAGAGCTTCACGCGTAAAGGAAATCTGAAGACCCACATGATCGTTCACACGGGAGAAAGACCTTTCACGTGCCCTCACTGTGGAAAGAGCTTCAGATTTAAAGGAAACCTTCAAGCTCACCTGAGgcttcacaccggagagaggcCTTACGCGTGTCTTAAGCGTGAGAACGCTTTCACAAATCGAAAAGACCAGAAATGTCACGCGCAAACTCGCTCTGGAAAGAAACGGCGTTGTTCGGAGTGTGGCAAGGCGTTTCGAAAGCCGAGCACTTTCAAAAATCATCTTCGCATTCACTCTGGAGGAAGGCCGTTCAGTTGTGACCAGTGTAGAAAAACCTTTCTTTTGCCGTCGCACTTGCAGATACACAGGAAGAGTCACGCAGGTGGGAGACTTTATTTGTGTTACTGGTGTGGAACGCGCTTTAAGTGGTTTAGCAAGTTTAAACTGCACCAGAAAGCAAGTGTCTGTGTGAAATCAAAGCTACGTTTACGCCAGAGCTGAGTGCGCTCTAAATACAGAGTCCTAAAGTAACTCTGTAACCACATGTCaattaattctcattcatttgcgaTATGTCTTCTAACTCAGAGTAGACTatttgggtaggtttagggtttgtagaataagttgacatatacttgcaaagtttggacccatcaaaatactGTTTGCTGCCATTCTAATGAGatatagttgcaaagttacttactgttagtaaaatgactattaaaataaagtgttacccggattttcttctcattttaacGGGTGTCAGTACAccgtgttttattttgtattcgtTACTAATTTTACTGGAGGCTTTTGTTGCACCATGTAAATATGAGCGGTTGCAGTAAACGGCCTTATGAATCTCTCTATAATCAGATCGATGGCTCGGTCAGGCCTTCATTCAATATGattgtatgttatttatttatttacatttttcaattgaAAGGGGTGATAGAGactgaaaatggaaaatatgttCTGGATGTTCAGCTTCCTGGATTcgtgtaatttaataaatatactgtatgtatgcaaaaaatgtgcaaaagtaatcagattaaattaatttgaactgACAAACTGAAATAATAGCTATTGTCCTACGTTATTTGAGTTTAATGAGGAAATGCACAGGTTAATCAATCTAGACTTCAATAACACAAAACATCGGAAATAAAATGTTTCGgatgtttaataagatcaacAGCCTGAGCTATCTTTTTACAGATGccaaatgtacagtaaaataaaaatcatacggATTTTCTCAATTTGCAAGAAACAACTGGAACCCAGATGGTTGCAATTTTGTCATGCATGTTAAATTGAATCCTCATATTTTAGgttatatactttatttgctACTTCACTCAAAATATAGTACAAAGTGGTTAATGTACAGTACAAAAGGAAATTTTACTATCACACATTCCCTGTAAATATCAAAGGTATGATAAATACTCTAAAAAAAGGTCCTTCAGCAGTTCTTTGGCTATATAGCACCACTGCCGTATAAAGAAGTACCTCGTTCACAATGCTGTTTGTAGCATCATGTTGACCAATCAAACTATTGTTGTAAACTCCCCcaaatttaaaacagtaattcaTTAGTTCTTGCGTGTCTCATGACCAAATATCATCACATCATGAAGCTTGTAGGGTGCTATTTAATATTACGTTTGAAATATGCGTAATTCTTTTCAGCACACTCAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133558 lncRNA upstream 8541 2437106 ~ 2437509 (+) True G90220
TU133549 lncRNA upstream 123086 2322609 ~ 2322964 (+) True G90214
XR_006252325.1 lncRNA upstream 134915 2309881 ~ 2311135 (+) True LOC122356488
XR_006252326.1 lncRNA upstream 134915 2309881 ~ 2311135 (+) False LOC122356488
TU133538 lncRNA upstream 134925 2310071 ~ 2311125 (+) False LOC122356488
TU133576 lncRNA downstream 30956 2481369 ~ 2481644 (+) False G90232
TU133578 lncRNA downstream 30956 2481369 ~ 2481775 (+) True G90232
TU133666 lncRNA downstream 174525 2624938 ~ 2625283 (+) True G90290
TU133668 lncRNA downstream 178779 2629192 ~ 2629607 (+) True G90292
TU133713 lncRNA downstream 406912 2857325 ~ 2954253 (+) False G90319
XM_043255195.1 mRNA upstream 13367 2428760 ~ 2432683 (+) True LOC122356459
XM_043255123.1 mRNA upstream 21319 2314516 ~ 2424731 (+) False nrxn1b
XM_043256327.1 mRNA downstream 27180 2477593 ~ 2478849 (+) True tmem14a
XM_043255327.1 mRNA downstream 31789 2482202 ~ 2488135 (+) True polh
XM_043254713.1 mRNA downstream 50269 2500682 ~ 2502321 (+) True LOC122356205
XM_043255905.1 mRNA downstream 389437 2839850 ~ 2846260 (+) True ppm1g
XM_043254766.1 mRNA downstream 402150 2852563 ~ 2860667 (+) True LOC122356236
TU133396 other upstream 265311 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 280022 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 573459 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 603942 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 843359 1581358 ~ 1602691 (+) False LOC122356486
TU133574 other downstream 19532 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 532146 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 532330 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 601569 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 603161 3053574 ~ 3055118 (+) False LOC122356070

Expression Profile