RNA id: XM_043255198.1


Basic Information

Item Value
RNA id XM_043255198.1
length 4163
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC122356460
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1779981 ~ 1805546 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGAGTGCTGTTTAAGTTCTAGTAGTGGCTCTGATCTTGTAGGAGGAGTTTGAGCGCAGCTGGCCTCTCATTGGCCGGAGTGTCTGGAGAGGGCGTGTCTCACACAGCAGGGACGGAGCGATCAGCTTCATCACACAGAAGCTGGAGAGAGGAGCTGCTGGAAAACCGTGCCTTTCAATCCCAGACATTCCCAGACCAGGTCCCGATCCGCTCCAGACGCTCAGAGAGCATCATGAAGtctCAGCACAAATGCATCGTGATCTTTGCGCTGGTGTGCTGCTGTGCTGTGCTGATAGCGCTGATATTCTCTGCTGTAGATGTGTGGGGGGACGACGACGACGATATCTCTAAAGGAACATGCAGCAGTGCCTGCCGTGTTGTGCTTGTTGAGAATATTCCAGAAGATCTGTCCATTGCATATAAAGACACGGTTCCTCTGGCCGCTAGTCTCCGTGAGCTTCTGGATCGAGCGCATCGATCTGTCGAGATTGTGTCTCCATGGTGGGCACTGAACTCTACCGAGCACGAGTCAAAGTCTCCCCAGGCCAAACAGGGTCATAACTTACTCCATCAGTTGATGAGTCTACAGTCGCGGTCAGTCAGTCTGAAGGTGGTCAGTGCACTGACTAATTCTACAGAGCTCAAGGCACTCACTCGAAGCGGTGCAGAGGTGCATTACTTGAACATGAAAGCCCTCATTAAAGGTCAGCTCAACTCCTCCTTCTGGGTGGTGGACAGGAGACACATGTACATAGGAAGTGCTGGCATGGATTGGAGGTCACTGTCTACGATGAAGGAGTTGGGCATCATTATTTATAACTGCAGCTGCCTGGTGTTGGACCTGCACAAGATATTCAGCTTCTACTGGCAACTGCAGTATAAAGAGTTTTTGCCTTCAGTATTGTCCAAGAAACTGAACGCTCTGTATAACAGAGACAGCAACCTTCATCTGCATCTGAATGATATTGAAGCAAAAGCATACTTTTCAAGCTCTCCAGATGCTTTCTGCACAAAAAACCGTACAAAAGACCTCGAGGCCATTAACAGAGTCATTCAACAGGCTGAGACTTTTATCTACATCTCCATAACCAACTATCTACCTGTGCTCAACCGCAGCCAACCCAGGTACTGGTCACGCATTGACAACATGCTCAGAGAAGCCTtgattctgaaaaaaagcatcaaagtACGCCTGTTAATAAGCTGTTGGGAGCAGACTGAGCCGCTGACGCTGAACTTCCTGTGGTCTCTCAAAGCACTGTGTACAGACTCCGTCCGCTGCTCCGTGGAGGTGAAGTTCTTCATTCCACAGAAGCAGAGCGATGGACGCCTCTACGGAACGAATCACAACAGATACATGGTGACGGACAGGTCTGTGTATATAGGCAACTTAAACTGGGTGGGCAACGAGTTTGTGTACAGCGCTGGTGTTGGTGTGGTGATCAGTCAGCGGGTGGAGCAGAACACCTCCACTGTAGTCGAGCGGATGAGAGCGGTCTTTGAGCGAGACTGGCATTCCCATTACAGTAAAACACTCCAGCCAAACGAGATCCCAGCATGCAGCACGCACACGGCAAGCCCTTCTCTCTAAAAACGTGTTTGAAAATCATGTGTAAACCTTTGTTGGCTGTTTCCTTTCACTTTGAGTTCGTACAGCAAGCAAGGCTTTCTATCGAAGCCATACTGTTTCGCTCTGATTTCACCTGGAAATCACAACTGGTGCTATTAGTTCGTTTAATTTGCCTCCTTTACTCTATTGCTTGGAAGCAAAGTAACATGTTTTTTCTGGTTAGATTGTATGCGGGCACATTACTCTTATAAATGCCTtggaaatgttaaatgaattcTTTCAAGATGTCTGCCTCTGCACATGTGTTGCCCTGAAAGTTTCTATTCTAAAAAACGTCTTACCTTTAACTATTAggggaaaaatgttttcaatttcatGTTCACTTTTGTATTCATAAAAGTTTAAATGTGCTTTCAGATATATCAAGCATTGTCAAGCACGGTGTTTTAAAGTCtatttcataaatcatttttacaggCAGGTTTTTGCTAAAAGTTTCTACATGTTCATATTTTACTACATGGTAAAATATGCTGGTAAATTATCTGATTTATTTGCACTTAGTATTTTAACGTTTTAACGTTAAACGTTATCAATGTCTTTTAATGTAACAcagaaaatctgtcatcatttgtgTTAGAAATACACAAAGAAATCTTATTCAAATTAGAGTTTATCTGTTATTCCCAGATAAACACTAATAACACAGGCTCTTTCTGTACGAGTCACACACACTACAAGTCCTTCACACAGTCCCACATCTCTGCGTTTAATAttgaactaaaatataaattctggTCGTCCGGTCAGAGCCTGgacccaactgagcctggtttcagGAAGCCATGTAATAAGCGGGATAATGTACATCTAGCGATAACAACCAGCTGGAAGTACATTATCACTTATGCAATTCATAGCTATTGattcaattatttttcatttttaactgcCTGTactcatgaaacatgaaaacatatttatactTGATTCATAATTCATATCATTGTCactaaaagtttaaattaaacgAAAAGAAGCTGCGAGTCTACCTCAATCAGAAATTGTGACAGAGCAGGGAGTGAGCACATTCATGTATACAAATGTTGCCAAACACAAGTTAAAAATTCATGCTCAGTGGCGTCGAAAAGATACTATAAAAGTAGAATTACTTTATAGTGCATATGTTGCGACATAAACGGAGAAAGCATTCAGATACATCTGCAAGTCTTTACTCAGAAACATGATCAAAACAGAGGCGAGAAACTGGTAAACAGATGTATAGAGGGCAAGTCACGAGAGTAAAGCCAGGTCTTCAATCGGCAAAACAAGAGAGATAATCCTTAGACAAGAGCAGTCGGAAAGTCCAGACAACGATATGAAGAGGCAGTAATCGAAACACAGGTCATCCAAACAAGGGACTGGACTGAGAAGAGAACTGGAAGAAAATGGAGTAATAGTACTCCATAGAGTAGCTGTGCAAAACCAATGACCACGCTAACAGTATTCGGCAGTGATCAGTAGGACATCCATGGCTTGAGTCCCGTGTCTGTGTGATCGGAGGCTGTGGGGACTGTATTACATTTCCCTCTCTTCATGTAGAATAGAGCATGTGTCAAAGTGGACTTTTTAGTCTTTAAAATCATTATCAGtggttctttatttatttgaagaaagTTCTTGCAGTTATCCAAATTAAGTCAGAAAGTATGAAAGTATATACAGTGCAAGCGTGTGAGGTTTGTGACGTAGAACCGTGTTTGCCAGCAGAAGATGATGTATCTCTAAACTGTCTTTATAAACATGCCGAAAGATTTCAACGGACGAGATTAATTATTTGCCTGGCCTTACTTTTCTGAATCAGATTAGATGAGTTAAGAAAAGCAGATTCTGAGCGTCAGCAGCATCATATTACTGTTATGAACGTGTGTCCAGGACTGGCATGGAAGATAATAGCTGTTGAATGaagtcttttgttttttctttgtacacaaaaagtattctcaaaGATTCATAAAATTACGTTTGAAACCCTGATGTCACGTGGACTACTTTTATTGTTGTTACTACATTTCTGTGCCTTGATCGTGGCAGGACCCTTGCTGTCTGCGGAGGGTCCGAATTCATTTATGGGCCAGGTTTCACAGACGGGGTTTAGCCTAAGCTTACACTCACACTGGGCAGGGTTGACATGAAACGAACACAAGATGTACAAGATGTTCAACTTTCTTGTcgatcctggaacaacattccaatcaaccaatcagattttcTTTCAGGATAATCtttcaggaaatatctgttaTAGGCTCATGATCAGGGTTATGTGCTTCTTTCCTCTTGTTAATCATTTACCACttattttgaacagtaatgttgatccaggatcatgtcaTGTCTTGGCAAAATCCCAGCGAAGCCCCAAGGACAAACAGGAAGTAATCACTCTGTTTACTTTGTTGCTTATTATCGAGCGGTGGACCACAGCCCTCTTGCAGTGCATTGATCAACAGGTCTATCATATTTGTGGCTTGGAAATTTTCAAACAATCATCCTGCTCATATGTCGTCACGCTTCCTGTTCGGGTTAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133344 lncRNA downstream 452 1778464 ~ 1779529 (-) True G90064
XR_006252332.1 lncRNA downstream 4057 1770312 ~ 1775924 (-) False LOC122356490
TU133356 lncRNA upstream 65836 1871381 ~ 1871732 (-) True G90074
TU133358 lncRNA upstream 81861 1887406 ~ 1887609 (-) True G90076
TU133360 lncRNA upstream 101771 1907316 ~ 1907538 (-) True G90078
XR_006252336.1 lncRNA upstream 246486 2052031 ~ 2054891 (-) False LOC122356492
XR_006252337.1 lncRNA upstream 246486 2052031 ~ 2054891 (-) True LOC122356492
XM_043255205.1 mRNA downstream 18482 1750546 ~ 1761499 (-) True cfap36
XM_043255172.1 mRNA downstream 32854 1737219 ~ 1747127 (-) False LOC122356447
XM_043255171.1 mRNA downstream 32854 1737219 ~ 1747127 (-) False LOC122356447
XM_043255169.1 mRNA downstream 32855 1737219 ~ 1747126 (-) True LOC122356447
XM_043255149.1 mRNA downstream 43452 1728223 ~ 1736529 (-) False ppp4r3b
XM_043255182.1 mRNA upstream 22538 1828083 ~ 1839665 (-) False slc30a6
XM_043255181.1 mRNA upstream 22538 1828083 ~ 1839665 (-) True slc30a6
XM_043255132.1 mRNA upstream 36762 1842307 ~ 1852973 (-) True chs1
XM_043255177.1 mRNA upstream 58986 1864531 ~ 1871277 (-) True ddx21
XM_043255221.1 mRNA upstream 68074 1873619 ~ 1877710 (-) True si:ch1073-291c23.2
TU133318 other downstream 88046 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 222978 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 1602661 123194 ~ 177320 (-) True G89543
TU132495 other downstream 1712105 67327 ~ 67876 (-) True G89537
TU132489 other downstream 1731182 47522 ~ 48799 (-) False LOC122356184
TU133469 other upstream 346292 2151837 ~ 2245078 (-) True G90161
TU133689 other upstream 778651 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 820783 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 1184873 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2867421 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile