RNA id: XM_043255204.1


Basic Information

Item Value
RNA id XM_043255204.1
length 1866
RNA type mRNA
GC content 0.54
exon number 5
gene id fbxo28
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2039482 ~ 2046270 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCACGGCGTGTCGTCACGTCCGGTGGTATCGAGCTCGGAGAAGATGGCGGCTGTAGTAGTGAGCGCTGATGGAGGCGTCGCGCCGCTGGATCCGGACTCCGTGTCGCCGCGGATCCCGTCTCCGGCGCCGGAGCAGCCGCTCCAGAACAACGCGCTGCTGGGACTCCCGATCGTGGCCATCGAGAACATCCTCAACTTCCTGTCCTACGACGAGATCAGCCTGCTGCGACTGGTGTGTAAACGCATGGATATGATTTGCCAGCGCATGCTCAATCAAGGCTTCCTGAAGGTGGAGCGCTATCACAGCCTGTGCCAGAAACAGGTCAAAGCCCAGCTGCCCAGGCGGGAGTCGGAGCGGAGGAACCACTCGTTAGCGCGGCACGCAGACATACTGGCAGCGGTGGAGACGCGTCTGTCGCTGCTCAACATGACCTTCATGAAATACGTGGACTCGAACCTCTGCTGCTTCATTCCTGGAAAGGTGATCGATGAGATTTATCGTGTTTTGCGTTATGTGAACTCCACACGCGCGCCGCAGAGAGCTCACGAGGTGCTGCAGGAGCTGCGAGACATTTCCTCCATGGCCATGGAGTACTTCGACGAGAAGATCGTCCCCATCCTGAAGAAAAGGCTTCCCGGCGCGGATCTCTCCGGACGGCTGATCGGATCTGCTCCAGTGGCCGGCCCCTCTACCTCTCTGACCACCATGTCCCTGCTGGCCAAGAACACTCCGTCGCGCTCGGAGATGACCAAGGTGCAGCAGCAGGTGAAGGTGAACGGCGCGTCGATGACGGCGCTGCGGCGCGAGATGCAGGAGGTGCGGGTCAAGCAGCtggagcagcagaagcagcTGCAGGACCAGGAGCAGAAGCTGCTGGAGCAGTCGCAGGTGATCGGGGAGCAGAACGCCCGGCTGGCCGAGCTGGAGCACAAGCTCAGGGAACTGATGGACAGCGCGGTGGCCTCCACCTCCTCCGGCTCTTCCGGCTCCTCCGCAGCCGCCGAGGGCGAGAGCAGCCTGTGTCTCAAACGGCCCCGCAAGTGCTCGGACCTCCCGCGTCACTCCAAACGCCTGCGTAGCAAGAAATAGAGGGACCTTTCTCCGTACCTTTCCGGTTTTCTTTTGCTTCCTTAAAGCTATATCATTTTTCCACTTATGTCAAACGATGCCGCGAGCATCACGCGGAGGGAAGTCATAACGAGAGAGGAATCGTATTGTTTTATCATGTGTCGCGCGTCCCTCATATCAGACACGTATTAATATACACTAATATGCTTGAGCCCCGTCGCTTGACTTCTGTTTCTAAAGGTTTGGCATCTGTCTTGAGCAACATTTTGTCTTTCACGTTCCTTCATGCCAATGAGCTCGAGGAAACCATGCAAAGAAGCTTTAGTCAATCAACGGCAAGAATGAGGAAGACGTGGACTCAGACCTGGCGCTTCTGAAGGCGCCGCCGCTTCTTCGCGCTCCGCAGTAGTTTCCACCATAAATAGGTTCGACTCTGTACGAAGTTTTCAAGTTAAAACTTAGACCCCCTTCTGGAAGTGGAGAACACGAGGTGTTCGTCACCCGACTACTaagttatattgttatataaatggtaaatatcAGCTTTGTTCTATGTTCTAAGAGTGAAATATTTCATCTGAGATGTGCCTCGACAGTATGAGCAAGTCAGTGGTCTTGCAGACGTCTGCAGCTGTAGCATACATGATTATATTGTTTGTCTAAAGATCGTCCATCACTGAGGATAGTGTCTTGTAGGTGTCAATGCCATGTCGTACCTGCCACTGTTTGTAGGTGTATAATTTACTGCAAATAGATCTGTGTCAGTGCAATAAAAATTGTGGAAAGCCTTGTTA

Function

GO: NA

KEGG:

id description
K10306 FBXO28; F-box protein 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133308 lncRNA upstream 3645 2035337 ~ 2035837 (+) True G90041
TU133297 lncRNA upstream 4915 2017183 ~ 2034567 (+) True G90034
XR_006252341.1 lncRNA upstream 26497 2010196 ~ 2012985 (+) True LOC122356496
TU133281 lncRNA upstream 29509 2008967 ~ 2009973 (+) True G90031
TU133276 lncRNA upstream 48222 1989872 ~ 1991260 (+) False lgi1a
TU133375 lncRNA downstream 5765 2052035 ~ 2052305 (+) True G90088
TU133376 lncRNA downstream 7327 2053597 ~ 2053846 (+) True G90089
TU133390 lncRNA downstream 29282 2075552 ~ 2075828 (+) True G90094
XR_006252343.1 lncRNA downstream 192672 2238942 ~ 2240047 (+) True LOC122356498
TU133438 lncRNA downstream 218476 2264746 ~ 2284358 (+) False LOC122356772
XM_043255184.1 mRNA upstream 42172 1991252 ~ 1997310 (+) True lgi1a
XM_043255218.1 mRNA upstream 175124 1860931 ~ 1864358 (+) True irf1a
XM_043255224.1 mRNA upstream 197600 1840336 ~ 1841882 (+) False mpc1
XM_043255213.1 mRNA upstream 221390 1815818 ~ 1818092 (+) True foxg1d
XM_043255816.1 mRNA upstream 269256 1768733 ~ 1770226 (+) True LOC122356760
XM_043255209.1 mRNA downstream 8719 2054989 ~ 2059566 (+) True degs1
XM_043255112.1 mRNA downstream 29903 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255113.1 mRNA downstream 30580 2076850 ~ 2094028 (+) False wu:fc17b08
XM_043255114.1 mRNA downstream 41268 2087538 ~ 2094028 (+) False wu:fc17b08
XM_043255140.1 mRNA downstream 107154 2153424 ~ 2166028 (+) False tp53bp2a
TU133255 other upstream 166891 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 197374 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 436791 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 569347 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 899287 1139159 ~ 1140195 (+) True G89770
XR_006252324.1 other downstream 107152 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 129883 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 423675 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 936289 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 936473 2982743 ~ 2984609 (+) False LOC122356072

Expression Profile