RNA id: XM_043255213.1


Basic Information

Item Value
RNA id XM_043255213.1
length 2275
RNA type mRNA
GC content 0.48
exon number 1
gene id foxg1d
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1815818 ~ 1818092 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCCCTTAATTAGTCAATTTCTCCTCGTCTCCTCGCGTAGGATGTCCTGACAGCGCCTGGCCTTTATTtctcaaaccaaaaaaagtttgatACAGCGACATGGATGGGAAAGAAGCAACGGCGCTCCAAAAGCTGAGCTCCTTCAGTATCAAGAGTCTGCTGCTTCCGTCCAGACACGACAGACACGACAGACACGACACGGCGCGACCGGAGGAGCCCGAGCCGCCGCCGCCGGAAGCCCGAGGACCCGCGGAGCCCGCGGAGAAAGTCAAAGACgccgaagaagaagaagaagaagaagaggaagaggagccGAGCAAAGCGGCGAAGCTCGACAAGCCGCCGTTCAGCTACAACGCGCTCATCATGATGGCCATACGACAGAGCCCCGAGAAGAGACTGACGCTGAACGGGATCTACGAGTTCATCATGAAGAACTTCCCGTTCTACCGGGAGCACAAGCAGGGCTGGCAGAACTCCATCCGACACAACCTCAGCCTCAACAAATGTTTCGTGAAAGTGCCGAGACATTACGACGACCCCGGGAAAGGAAACTACTGGATGCTGGACCCTTCGAGCGACGACGTGTTTATCGGCGGGACGACCGGGAAGCTCCGGAGACGCTCGGCCACGTCCCGGGGCAAGCTGGCCATCAAACGAGGACTGCGCTTTTCCCCGCTGGGTTTGGGAATAAACGAGACGCCCAATAATCCTCTGTACTGGCAGATATCGCCGTTGCTGTCGTTACACCCGCCGCACTACAGCGGCGCGCCGCACGGCTTTCTGAGTCAGGGACACGGGTACGGTTCTTTCTCCGAGCCGCGTCCGGTTCTGGGGCTCACGAACTCTTACGGGATGGGCTCGCTGTCGGTCCCGTCCGGTTACCTGCCCCCGCCGGCCCTGCAGAGCGACTCCCTGAGGAGCACGCTGTCGTTCCCGCCCGCCGTTTCCGGTGGCTTACCTGGAGTTTTGTCACACCACGACAGAGTCTCTCCAGACTCGTTTTAAACCGACGGGGAATGATTTCTAATACTTCCGTTCAGTTTCGAGCAGGTCGTGTGCTGACGAGCGGAACCGGAGCTCGTGACACGCCGTTAACGTGCTCGGAAAGCGCGGGAGTCACGTAACGCGATTAAACTCCACACTATTTATATGATGTCCGAAGTTAATTTATGTCATATTTCTGAACTGTGTTTGATGTCGTGTATCTGTCCGGTCATCATTTAACCGGTAAGTGACCGAAGCGGAGATCTTCAGGgggttatttattttctttcctcaGGTCCCGCTCCTCGAAGCGCGCGCCGCGTCTTTCCCTTCTGTTTGAACTCAATAAAGACTCCTGAGAGACCGGACCAGGACGCGTTTAGGTTTAGCTGCActcaaatgattttaaaaagacgAACGAATTAACGTCGAGTTTAAAAACACGCGTCGGACCCGTAAACGAACACATTAGAATTAAACTCTATCCTGGACTCCACGAGCTGAGAGCGCGCGCCTgactcacataaacacactttcacacCAACATCCGGTGAAGAGGTGCATCGGTGAAAGACCAGGGGGTCGCTTTATCACTTTACAGCTGTGcacttgaaaaaaaagagagtttcTTTGAGAAGAACTGGGAAAAAGCGCTCTTGTGTTTACAGCGTCGGGACTGCtaataataaagtgttttgtcaaaatgtagaaaaaaaggGATTTCTTTTATAGTCTCTTTTTATGTAAACTTACAATGCgaacaaatttaattaaaaatgtcttcaagtAGTTTTGAAGAGATGATTGTGAATAAGAGCGAGGTGTGAGATCTGCCTCTAAGCCTCCTCACATCAACACGAGTAATAATACTAGAACtagaacaaaactaaaactagaTCATCTGGGGAAGAACATTCATCTGTTTATAAGAGAGAGACGGGAAGAAGTGAACGTGCTcgaaaaatataaacatatttaaacaaaaaaaaaaaacccaggtCGGAAGGGTTTgggtgtaaaaacatttcaagccGCCTAGACCTTTTTATTGAGTTAAAGTATgggataatataataaaaacgaaCTGTTAGGCTATATATTGTtctgtttattgttattgtttgattgatatttattcatttattgtttgttttctatagGCTAGATATATCTGTTTTAGAAGAGCAGCTTGAAGAAGGGACTGAggaataaaagcagaaaatagaGCTTTATAAACATCAACATTTCattgaaataattatatttataaattaaatcattattgaa

Function

GO: NA

KEGG:

id description
K09385 FOXG; forkhead box protein G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133178 lncRNA upstream 87667 1701578 ~ 1728151 (+) True G89957
TU133211 lncRNA upstream 99934 1711945 ~ 1715884 (+) True G89981
TU133202 lncRNA upstream 122697 1692435 ~ 1693121 (+) True G89974
TU133200 lncRNA upstream 123407 1690146 ~ 1692411 (+) True G89973
TU133201 lncRNA upstream 123773 1690146 ~ 1692045 (+) False G89973
TU133236 lncRNA downstream 19887 1837979 ~ 1839659 (+) True G89997
TU133238 lncRNA downstream 20114 1838206 ~ 1839659 (+) False G89997
TU133243 lncRNA downstream 22243 1840335 ~ 1842108 (+) True mpc1
XR_006252327.1 lncRNA downstream 43379 1861471 ~ 1862276 (+) True LOC122356489
TU133250 lncRNA downstream 48055 1866147 ~ 1869613 (+) True G90006
XM_043255816.1 mRNA upstream 45592 1768733 ~ 1770226 (+) True LOC122356760
XM_043255222.1 mRNA upstream 130639 1683250 ~ 1685179 (+) True prorsd1
XM_043255228.1 mRNA upstream 202488 1588526 ~ 1613330 (+) True LOC122356486
XM_043255226.1 mRNA upstream 437865 1357268 ~ 1377953 (+) True pdzd7a
XM_043255207.1 mRNA upstream 469955 1342096 ~ 1345863 (+) False selenou1a
XM_043255224.1 mRNA downstream 22244 1840336 ~ 1841882 (+) False mpc1
XM_043255218.1 mRNA downstream 42839 1860931 ~ 1864358 (+) True irf1a
XM_043255184.1 mRNA downstream 173160 1991252 ~ 1997310 (+) True lgi1a
XM_043255204.1 mRNA downstream 221390 2039482 ~ 2046270 (+) True fbxo28
XM_043255209.1 mRNA downstream 236897 2054989 ~ 2059566 (+) True degs1
TU133118 other upstream 213127 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 345683 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 675623 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 804639 1008285 ~ 1011179 (+) False comtd1
TU132671 other upstream 1392637 380964 ~ 423181 (+) False G89631
TU133244 other downstream 22243 1840335 ~ 1842108 (+) False mpc1
TU133255 other downstream 54092 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 335330 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 358061 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 651853 2469945 ~ 2470381 (+) True G90230

Expression Profile