RNA id: XM_043255214.1


Basic Information

Item Value
RNA id XM_043255214.1
length 2686
RNA type mRNA
GC content 0.43
exon number 7
gene id zgc:154058
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1299234 ~ 1327785 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCCGGTTTGGGGTCATGCAACAAGTATAAATGCACATTGATGAGCAGAGGGAGACAGGCTGGCGAAGGCGAAAGAAGTGGATGTTTTGAGGGGAGCAGGAGAGGACTGTGTGCAGGAGATGTCTCTGTGGATGATATTACCCGTCAGCCTCCCAGCTCTCACCATCACTGGAATATGGGTCGTGTATGCCATGGCCTTGTACAACCAGCATGTCTGTCCTGTGGACAACTGGATGTATAACCAGTCATGTGAGGTGGATCTGCCATTGCAGAGGGGACCGACCATGTGCTGTACTCTGGACAATGTTCCTCTTATAAGTAAATGTGGCACACTTCCTCCAGAGAGCTGCTTCTTCAGTCTCATCTGCAGCACTGGATCCTTTATGGTGATGGTGATAGTGTTGTTACGCTATGCCCATGTGATAGAGAAGCACCAGAACTGTGTGTTAAACACAGCAAGTCTCTCCACCGGCTGGATCTGTGCTGCAGGTCTCATCATGGTCGGCAACTTCCAGGTGGATAACGCTAAGGTTCTTCACTATGTTGGAGCAGGGGTAGCCTTCCCCACCAGtatgctgtttgtgtgtcttcAGTCTGCGCTGACTTACCGTCTGGCCAAGACTCAGGGAGAATATAATATGGGTCATTTGCGTCTCTTTATGACCCTGCTGGCCTTTGTGGCCCTGGTGCTCAGCGGGGTGTTTTTTGTCCAGGAGAGTTTTGTCCTGCAACATGCATCGGCCATTTTCGAGTGGGTGTTCTGTGTCATTATTATGCTGTTCTACGGCACGTTCGCTTTTGAATTCGCCGGGATATCTAGTGACACGATGATGGTGCTGGCCCAAGGGCAATCTCTACAGTCCGTAAGCCGAGACCACAAGATGGAGTCTCTCGCTGGGGGCAGCCAGCACCAGCCTGAGAGCCTGTCCATGCTGTAACCTCAGTGTCCCGTATCTCTCTCAACACTacgaaaaaaaacactgtaaccGAAGAGGGAAAGTTACAGAAACTGGACGTGGCTCTCGTACACCTTTGCCAAAGGAACCAGCTcagattttgcacatttttgagaGACTTCTTCGCTCTGGGGGGACCTTTTGAATCGCACAGCTTCCAAGCTGGAAACAACAAAGATCATTGCCTGGATGTATTGGAGTTTCCATTAGATCTTATTGGGATTTTTAAGTATCTGCGTTACTTGGATAAAGAGACTACAGACTGCTAGTTGGCAAAATTACACGTCCATTGGTGAAACCAGAGGACCGCTACGTCAATGGTGTAGTAAACTAAACCCGAAGCCTTTTGCAACTGTCAGCACTCAAGCATTTTAACGTAGTGCctcaaaacaaatgttattgTGCCAATTCCATACAGTGCAAGGCAGTGGATCCCAAAATGCTGATGTTTTCCGTgcctttagtttttttccaaagtCAGAGATggttaaataacattttattgtcaCTTATATCTGCTGTCTGCTAACCGATCAAGGTGTTTCATTTTGCCTTAATCGCCATATGCtgtctgaaatgtattttccagGAGCTTGTCATTACCGATGTGCCTTAAACCAAAAACCAAATACTGATATTTAATAGAGATCTATGTCCATAGTCTAGGCGTGTATTTTTTTTGATACGTAGCAAATATTATGCTGGTTGTAAACAACTAAGCTGAACGAGATCAGCAAAAACCTCTCGTGAAACAGGAGCATAAGCTTATCACATTAAGTCGCCAGTAGTTGGTGCCATTCCAGATGTCATGTTAGAGTCTATGAGTATTGTACATTGTGACCAAATGTAATTGAGAAGAGAGCTTGTCCTGAGGTCGGTGTGATCATAGGTTTCCCTCTTTCTGTCACTGTGGGAATtgttgtgtgtgttgggggTTTATGGGAGTTGGTTAAAAGGAAGCGTCTTGAAACATGAAGCCGCCCTTTAATGTTAAGGGTGACTAGTTTAGGTGTTCTTAagtttttgtcagctgtttttGCAGACAAAATGATTTGCAGCAGGACTGCAAGGTCAtaattggttttgttttgaaaaacagaTGCAATTTGGTTTACAGTGGTCAAATGTTTTCACACTaccagcatgaaaaaaaaatcacattgttcCTCAGCTAATATCAAAGTTTTGTCAagagttttgtcattttatttgtcaGGATCAGAGCCATATTTATACTACGAGTGCCGTCCTGAAAACATCTTTCGCGCCATTTCAGTTTACTAATTCTCTTCGCTCAGGAATTTCagatgtctttgctgtcacatATCTTCTCTCTGCATTCAAGACTGCATCAATCCACCAGATATAAGTGAAAAATGTGCCATTTCCATTACTTGTTCAGAACATTTCCTTTATAGAGAGCTTTATTTTGCTTCAAATACATCTTGTAATACTGTTAAACCCATAATTtggtttaatttgttgtttaaacCATTTTCtcctaaatatttattatattgcttAAAGTAAtcgttaataaaaaaaacaactatatgCTATCTTTCATTATGTTTCAAATCCAAATGCTGTCATGTTTCCTGTGGAAGTCAAAATAAGAAATTTGAAGAATTGCTGTGCAGCTCTATTCCTCACAAGACCACCATAAGTATCTCACGAGACATTTCAGTTGTTCCATGTGTCATTTCATTGATAATGTTACCCTTTgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252339.1 lncRNA upstream 2 1298585 ~ 1299232 (+) True LOC122356494
TU132820 lncRNA upstream 134846 1080132 ~ 1164388 (+) True G89754
TU132864 lncRNA upstream 150131 1148271 ~ 1149103 (+) True G89775
TU132849 lncRNA upstream 152374 1129089 ~ 1146860 (+) True G89764
TU132779 lncRNA upstream 269939 1026973 ~ 1029295 (+) True G89721
TU132946 lncRNA downstream 4053 1331838 ~ 1335134 (+) True G89821
TU132943 lncRNA downstream 14382 1342167 ~ 1345861 (+) False selenou1a
TU132976 lncRNA downstream 118407 1446192 ~ 1447605 (+) True G89842
TU132983 lncRNA downstream 121261 1449046 ~ 1449943 (+) True G89843
TU132986 lncRNA downstream 122580 1450365 ~ 1450830 (+) True G89844
XM_043255227.1 mRNA upstream 2301 1292045 ~ 1296933 (+) True LOC122356485
XM_043255168.1 mRNA upstream 8220 1288427 ~ 1291014 (+) True LOC122356446
XM_043255150.1 mRNA upstream 15547 1280906 ~ 1283687 (+) True tlr4al
XM_043255225.1 mRNA upstream 21909 1276525 ~ 1277325 (+) True LOC122356482
XM_043255185.1 mRNA upstream 23819 1269936 ~ 1275415 (+) False si:ch211-198a12.6
XM_043255207.1 mRNA downstream 14311 1342096 ~ 1345863 (+) False selenou1a
XM_043255206.1 mRNA downstream 14340 1342125 ~ 1345863 (+) True selenou1a
XM_043255226.1 mRNA downstream 29483 1357268 ~ 1377953 (+) True pdzd7a
XM_043255228.1 mRNA downstream 260741 1588526 ~ 1613330 (+) True LOC122356486
XM_043255222.1 mRNA downstream 355465 1683250 ~ 1685179 (+) True prorsd1
TU132855 other upstream 159039 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 288055 1008285 ~ 1011179 (+) False comtd1
TU132671 other upstream 876053 380964 ~ 423181 (+) False G89631
XR_006252315.1 other upstream 922663 323737 ~ 376571 (+) False dlg5a
XR_006252307.1 other upstream 1071578 190797 ~ 227656 (+) False fignl1
TU132991 other downstream 141620 1469405 ~ 1470135 (+) True G89846
TU133118 other downstream 253573 1581358 ~ 1602691 (+) False LOC122356486
TU133244 other downstream 512550 1840335 ~ 1842108 (+) False mpc1
TU133255 other downstream 544399 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 825637 2153422 ~ 2166028 (+) True tp53bp2a

Expression Profile