RNA id: XM_043255218.1


Basic Information

Item Value
RNA id XM_043255218.1
length 1137
RNA type mRNA
GC content 0.52
exon number 8
gene id irf1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1860931 ~ 1864358 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACCTGTTGGTGCAGGTACGAGGAGCCTCGGCTGtaatctgagtgtgtgtgtgtgtgtgtgtgtgtgtgatggtacAGAGACTCTTCTGAAGCACACGAGGTCTGTCCGGCAGACTCAGAGATGCATCAGGGACGTCTGCGTCTGAGGCCGTGGCTGGAGGAGCAGATCGACTCCGGAGGATACCCTGGGGTCGTGTGGCTGGACCAGGCTGCCAGAGTTTTCCAGATTCCCTGGAAGCACGCAGCCCGGCACGGCTGGAACATCGACAAGGACGCCACTCTGTTTCGAAACTGGGCCATCCACACAGGGCGATACAAACCCGGCGTAGACAAACCTGATCCCAAGACATGGAAAGCCAACTTCCGCTGTGCGCTCAACTCCCTGACAGACGTCAAAGAGCTTCAGGACAAGAGCATCAAGAAAGGCCACAACGCTTTCAGAGTTTATATTCTCCTTCCACACAGCAAAACTGTCAAGAGACGCAAAGCTTTAAGGTGCTTGGATAGTGACAGCAGAGCAGCTACACCTCCACAGACTCAAAGGAACATCCCTCTGGAGAGATTTACAGAGGCCTTCTGGAAGCTGACGGATGAGCGAGGCAGCGGCGCGGCTGAAGCCAAGAGCGTCGAGGAGGACAGAGCGCTCCTCAGCTACTCGCAGGGCCTGCAGCTGAACAAGACGGACGAGCACGAGCAGACAGAAGCTGTGCTGAAGATCGTGGACCACCTGAAGAACCTggagcactggagcccctcgtACGAGAGCGACAGGGGCTGGAGGACAAACTCCACGTGGATGGGATGCCTGTGCGAGACGATGGAGTACTCCTTCCACACGGACTGTAACGTTCACAATACCTCAGCAGCTCTACACGACTAACCCCACTGAGAGCACGGGCATGTTTctacatctgtttttttttttttgcagtgaaactGAAGGAAAAGCATCGTAATTAACAAGCATGTTAATGGACAGTGAAACTCTGCCTGAGTGATTTTGAGCTGTagtaaattatgcaaaaaggGCAGCTTCTTGGTCACTAATACCAGTGCCATAAGTTACCCAAAGAAGATATTAGCTATTATTATATGTTTGCCGGATCTTTCAATAAATCTTGAGTTTATGCTTTGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133243 lncRNA upstream 18823 1840335 ~ 1842108 (+) True mpc1
TU133236 lncRNA upstream 21272 1837979 ~ 1839659 (+) True G89997
TU133238 lncRNA upstream 21272 1838206 ~ 1839659 (+) False G89997
TU133178 lncRNA upstream 132780 1701578 ~ 1728151 (+) True G89957
TU133211 lncRNA upstream 145047 1711945 ~ 1715884 (+) True G89981
TU133250 lncRNA downstream 1789 1866147 ~ 1869613 (+) True G90006
TU133254 lncRNA downstream 7332 1871690 ~ 1871892 (+) True G90009
TU133256 lncRNA downstream 8857 1873215 ~ 1873444 (+) True G90011
TU133258 lncRNA downstream 10343 1874701 ~ 1877196 (+) True G90013
TU133264 lncRNA downstream 37258 1901616 ~ 1901893 (+) True G90015
XM_043255224.1 mRNA upstream 19049 1840336 ~ 1841882 (+) False mpc1
XM_043255213.1 mRNA upstream 42839 1815818 ~ 1818092 (+) True foxg1d
XM_043255816.1 mRNA upstream 90705 1768733 ~ 1770226 (+) True LOC122356760
XM_043255222.1 mRNA upstream 175752 1683250 ~ 1685179 (+) True prorsd1
XM_043255228.1 mRNA upstream 247601 1588526 ~ 1613330 (+) True LOC122356486
XM_043255184.1 mRNA downstream 126894 1991252 ~ 1997310 (+) True lgi1a
XM_043255204.1 mRNA downstream 175124 2039482 ~ 2046270 (+) True fbxo28
XM_043255209.1 mRNA downstream 190631 2054989 ~ 2059566 (+) True degs1
XM_043255112.1 mRNA downstream 211815 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255113.1 mRNA downstream 212492 2076850 ~ 2094028 (+) False wu:fc17b08
TU133244 other upstream 18823 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 258240 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 390796 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 720736 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 849752 1008285 ~ 1011179 (+) False comtd1
TU133255 other downstream 7826 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 289064 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 311795 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 605587 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 1118201 2982559 ~ 2984609 (+) False LOC122356072

Expression Profile