RNA id: XM_043255226.1


Basic Information

Item Value
RNA id XM_043255226.1
length 4509
RNA type mRNA
GC content 0.48
exon number 15
gene id pdzd7a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1357268 ~ 1377953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTGGGGCCTGGGAGGACCAGATGACTGACTTCTGCCAAGCAAAGCTCCACTGGCAGAGAGGAGGGACTCCTGCCTAATGCCCCGTCTAAGCCACAGACTTTCAACCCCGAGCCACTATTACACATCGTCTTTTCTGTGGGAGTCTTTCTCGAACAATGCGCATAAGGATACGCCACTTTTTGGATGATAGAATTTGTTTATCAGCTGTTCCGtgaaatgattataattatgtCAGAGTCCTTTGGATCAGTTCACTCTGTGAACACCAGTCACAACGTGGCTTGTAATATAGAGTAAACGATGCTGGATTCATAGCAGTGTCTTCCTGCACCGCTGCAGTGGAGTTTTCTTTTGTGGATCTAATCCCGTGGACTGTAATCCTTGTGGCTGGCATTGACCCACTGGACCTCTAGTTTTCCTCCTCCACCCTCTTTCCCTTTAGAAGCTCAGGCCCTGGATGAGGGTTAGAGGGGTGGTCGGCACTTTGCTATGGCTCATTCGTCTGACACGGCACGCAAAGACATGACGAATGGGGCTCATCCCAGTGCCCAGCCAGGGCCCTCGGGCACTTCTACTCTCCCACGCTATCTGCACAAGAAGCAGCAGCGCCAGAGAGGAGTGAGATCTTCCTCTCCTATGGGCAGGGTCATCCTCATCAATGCACCTGTTGATGGTGGGGATGACAGTGAAGACATCCACACAATTACTGTGGACAAAAGTGAGGATGGCAGGCTGGGCTTCAGCGTGCGGGGAGGCTCTGAACACGGCCTGGGAATCTTTGTCAGCAAAGTGGAGGATGAGAGCTCCGCAGAGTTGGCAGGCCTGTGTGTCGGGGATAAGCTAGTCGAGGTGAATGGCATAAGTCTGGAGAGCATCACCATGAGCAGCGCAGTAAAAGTCCTGACAGGAAATAATCGTCTGCGCATGGTGGTAAGACGTGTTGGGAAGGTGCCTGGTATCCGCTATTCGAAAGAAAAGACTACATGGGTTGACCTGATCCACCGAAGGATGGTAGTGGAAGAAAGTGGTCGCACCCCTTCAGAGGCCAGTTCAGATGGAGCCCTGCGCAGAATAGTTCACCTCTACACAACCTCAGATGACTACTGCCTGGGCTTCAACATCCGCGGTGGCAAAGAGTTTGGCCTGGGCATCTACGTCTCAAAGCTGGACCCCGGTGGCCTGGCAGAGCAAAATGGAATTAAAATGGGGGATCAGATTCTGGCAGCCAATGGAGTGAGTTTTGAGGACATCACACACAGCAATGCAGTAGAAGTGCTAAAGAGTCACACTCACGTGATGCTGACCATTAAGGAAGCTGGCCGATATCCTGCTTACAAGGAGATGGTGGCAGAGTACAGCTGgcttaataaatTGGCTAATGGAGGCCAGCCCTCCTCCTCCCAGGGTTCAGACTCCTACTCCTccacttcctctctctcctccgggACGCCGGTCAGCTCTCTCAGCGGCCTCTCGCAGGTCATGTTCCCCCCTGTATTCGGCTCAGAGATGGTGGATGTGTGCATCTCTACCGAGGACCGCTCACGTCGCCCCAGCTCTGAACGGATAGAGACCGCCATCCAAACGGACCCACCGGAGCCGGACGCCACATCAAGATCTAGTAGGGTCTTAACCACAGAAACCAGCCGAACGGTTGGTGAAACTGTCCTGTTAAAAGACACGGTGATCCGCAGCGGGACTGCCAAATCTCGGACAAGGACGTTCTCTGCTGGGGATAAAGAGACTTTGGACTCTGCTAAAACGGCGGTCCTGATGGCCCTGAGCAAGCCTCGCAAACCCATCCGCCGATCCCAGAGTCACATCACTGTGTCAGAGGACAAGCTGAAGAAAAGGAAGCATCAAAAGGACAAGGTAGAGACAGAAAGGAGCACCCTGCAGCGCTCCAAAACCTTTGTCAGCTTGCTCTTTAAAAGCGGACGCAGGAGGGAAAGGTCGTCCTCTAGAGACAGGAAGGACAAAGGGACAGGGGACGGACACAGAGGAAGATCCAAATCCCCGAAACATTTAGATAACGAACCTGGTAAAGAGCGGGGTCGACCCATAATTAACCTGTTGAGTTCTCCCAGAGAGACTCGTGCAGGCGTGAGGGAGCACAGCCCCATCCCCAGCCCCGAGACCATGGCCCTGTTGGAGGATATGGCCCGCAAACTGCTCAACGAGGATGAGGTAGCGGCTGTCATGAGACACTGTAAAAGGTTTCTAGTTGATCGTGTGGTTGAGGATCTGGTGCGCCCCCTGCTGGCCATCTTGGACAAGCCTGAGAAGCTCCTGCTGCTGAGGGAGGTTAGAATGATCATCCCTCCCACGGACCTGGGCCGGTTTGACAGCATGGTTTTGCCCTTTGAGCTTGAGGCCTATGACATACTAAAAAACCGCTCTGTAAGGTCTCCTGTCCTACGTTCTCCACGTCATGGTGGAACACCTCGTCGTCATCTAATAACTCCAATCCCAGATTACCGTGGCGGATTCCACCTTCAGCCGGTGCAGGATCTGGAGAGAGAACGGCAGCTCATTGAAGATCTGGAACGGCTGCGTTTGGCAGGTTTACCGACCGGACGACTTCCTCCTCCTCGAGCTTTCACTCCTCTCCTGGATGTACCAGTGGACACTTACATCACAGACTCGCTCCGTAATCGCTCACTGAGCCCCGCTCGGCCCAGCTGGACTCACTCGGAGTCTCCTCACGGCACGGGACGCGTCGGACGCTCACCCCAGAGAAGAGACAGCGTTTTCCCCAGGACATCACACCATGACTCTTTATCCAGCAGGGGTGATTCTGCCCCTGAGCGAGGGAGATCTCCTTATAGGAATGGACATCGAATGAAAACAGACAAATCCCAGAATGGTAAAGAGGTAAAGCATACTGTAATGAGTGCACAACGCCGGAGCAGGACACCACTGACACAGGTGTTTGCGCCCAGCTCGGATCAGGACTGGAAAGAACCAGTGAATGGACATTCAGACAGCCAAGAAACCCCACCAGAGCAGGAGTATGAACTAACCACAGTTACTATTTCTAAGACCAAACAGTCCCTTGGAATAAGCATCTCAGGTGGGATTGAGTCAAAGGTGCAGCCAATGGTGAAAATAGAGAAGATCTTTCCAGGAGGAGCAGCATCTACTAGTAACGTTCTAAAGgCTGGATTCGAGCTGATGTCGGTTGACGGAGAGTCCCTCCAAGGTGTTACACATCAGCATGCGGTGGATGCCATTCGAAGGGCTTTCAGCAACAAGGCCAAAGACCCCATGGAGTTTATCGTCAAAGTTCCCAAGAACCCGAGGGACTGACTGAAAACAGCCTAAAACTCAATGAGTTTGCAGTAAAGGCCTCAGTATACTTACGGCAAAGTTCTCTTTCATTCTTCAGgaagtaaaagtaaaaggaAGTTTGAAATACGCAATGCCTGAAAATCATGAGAGCAGCGATTAGATGAATATGTAATCATGAGCAACACACTCTTTTctcaataacaaaataaatacaaaaagacagAATTAAGCAGTTAAAAACAGCAGTTAAAGGGACGGTGCACCCTACTGTATTATATAATTGCCACGGACCAATGAGAGTTTGAAGATGCTTACAGCCGAAGAAAACTTTTCTGTCAAGTTGCTTTGAATTCCAGAAACAAACTCTAACTTTTGGCCTGATTTTGTTTAGAAAGATATTACACCAGTTCTTGAATTTTGCTTGAAGTATATCAGGGTCTTAGTTCTGCAGTGTATAAATGAAGGACACATGCTTGGTTTGAAGGAGAAATCAAGGCATCATGTCCGGTAGAGCAAGAATCCAAAAATGGGCTTCCAGAGAGTGCTATTGGCCATTTACAGATGCTGACCTTATCCCTTCCTGTTGAAAGTTATTTGCTTTTGAAtctgttctttttctattttcaattCATTCCATAAAGTCTAATTAAACAGTCATAACTCATCATTTCCACCATTAAACGATCTGAAACCCTGTATAAACATGAGATATTAAGGGTTTCTATTTTTGGTTGCAGTTTAAGCCTGGAGCTAGATAAGAGTGGACTGACATGACATGCTTATAATCATAAGTCATAACACTATACCCATCCATCTGGGTTACAGTCATGCCTGAGAGAGATTACACACAGCCACAGTATGGATTGAGATTGAGATTaggtctttttttctttcttttaaattgcTGGTTTGGTTTAGTGAATGTCTGGGGGATTATTACAAATGAGTATCTCTGTCTCAGTTCACATGCTATGCTCTAAGAGAATTTCTATTTTTGGCAACTTATGCTTATActtagcatttcttttttatatttgtgccTTAAAGCTGCACATATGGACTGTGCAATTGAGATCTAAACGTTGTGATGATTGTAAGATCAGTGTTATATACTGAACGTTTTTCTCTGTACGCATCTGAAAAGCATCTGGtctgcatttttgcaatttgttttattacaagtCATTGtgtgattataaataaaaaggttaaatat

Function

GO:

id name namespace
GO:0060119 inner ear receptor cell development biological_process
GO:0042462 eye photoreceptor cell development biological_process

KEGG:

id description
K21882 PDZD7; PDZ domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132943 lncRNA upstream 11407 1342167 ~ 1345861 (+) False selenou1a
TU132946 lncRNA upstream 22134 1331838 ~ 1335134 (+) True G89821
XR_006252339.1 lncRNA upstream 58036 1298585 ~ 1299232 (+) True LOC122356494
TU132820 lncRNA upstream 192880 1080132 ~ 1164388 (+) True G89754
TU132976 lncRNA downstream 68239 1446192 ~ 1447605 (+) True G89842
TU132983 lncRNA downstream 71093 1449046 ~ 1449943 (+) True G89843
TU132986 lncRNA downstream 72412 1450365 ~ 1450830 (+) True G89844
TU133000 lncRNA downstream 160349 1538302 ~ 1539354 (+) True G89855
TU132940 lncRNA downstream 168974 1546927 ~ 1561464 (+) True G89817
XM_043255207.1 mRNA upstream 11405 1342096 ~ 1345863 (+) False selenou1a
XM_043255206.1 mRNA upstream 11405 1342125 ~ 1345863 (+) True selenou1a
XM_043255214.1 mRNA upstream 29483 1299234 ~ 1327785 (+) True zgc:154058
XM_043255227.1 mRNA upstream 60335 1292045 ~ 1296933 (+) True LOC122356485
XM_043255168.1 mRNA upstream 66254 1288427 ~ 1291014 (+) True LOC122356446
XM_043255228.1 mRNA downstream 210573 1588526 ~ 1613330 (+) True LOC122356486
XM_043255222.1 mRNA downstream 305297 1683250 ~ 1685179 (+) True prorsd1
XM_043255816.1 mRNA downstream 390780 1768733 ~ 1770226 (+) True LOC122356760
XM_043255213.1 mRNA downstream 437865 1815818 ~ 1818092 (+) True foxg1d
XM_043255224.1 mRNA downstream 462383 1840336 ~ 1841882 (+) False mpc1
TU132855 other upstream 217073 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 346089 1008285 ~ 1011179 (+) False comtd1
TU132671 other upstream 934087 380964 ~ 423181 (+) False G89631
XR_006252315.1 other upstream 980697 323737 ~ 376571 (+) False dlg5a
XR_006252307.1 other upstream 1129612 190797 ~ 227656 (+) False fignl1
TU132991 other downstream 91452 1469405 ~ 1470135 (+) True G89846
TU133118 other downstream 203405 1581358 ~ 1602691 (+) False LOC122356486
TU133244 other downstream 462382 1840335 ~ 1842108 (+) False mpc1
TU133255 other downstream 494231 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 775469 2153422 ~ 2166028 (+) True tp53bp2a

Expression Profile