RNA id: XM_043255230.1


Basic Information

Item Value
RNA id XM_043255230.1
length 4187
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122356487
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2439206 ~ 2457063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCGATGCGCGGTTTGTTGTGAGTCGTTTAAAGAAAGGTTTGTGCACTTTATGTTGAAGTCTATGTTTTAACAAGTGATGTACAATTAGTTACTCATGATTGGTTTTGTAATGCAGTACCTGGCGTTGATGAGTTTGTAAGTGAACAGGGTCGAAGCTCAGTCAGTTTATGAGCAGAAACCGGTCGCGGTCCAGCAGAGACTGGAAGCAGGGCACGCGGACGACCCCCGCTGGTCAGGACTCAGAGCTTTCACACACTTCATCGAAGTGGAATCCGTGTAATGTAACTGATCTAGAAAAATGAAGTAACTAACCATGCAGTGTGTGTGCACAGTTAATACTGTTTTATTGGTTTGTGTTCGGAGCTTGTGCTCTGACTGAGCCCTTGCTAGTGTGCACTTGCTAGTGCGCTGACTGTGAAGCTGGTTGAGACGCACTTTGAGGTTTAGTTTGGATTAAGTAGTAGTGTCCAAACACAGAATACATCCTGGTGAAGCAACAGACATCCTATTGTAAATATGACCTtaattaaagaggagagtgaagacATGAAGATCGAAGAAACATTCAGAGTGAAGCGGGAAGATACCgaggaacaaacagAAATGATGCCATTGAAAGAGGAGAGTGATATTTTAACCGATATGGAAGAGAAAGATCAGTATGAGAAACATCACGATTTTATAACTAGAGATGAGTCTTTTAGTTGCTCACAGAATGGAAATACTTCCTCAAGAAAGATAGGAACAAGACGTTATTTTGCCTGCTTTCAGTGCGGGAAGAATTTCAACCAACCTGAAAACCTTCAAGTACACATAAAacttcacactggagagaagtcTTACGCGTACCCTCAATGTGGAAAACAAGATGGGAAACTTAAAGTCCAGATGAGATTTCACGCTGGAGACAGCCCTTTCACCTGTCAACAGTGTGGAAACATATTCACTCAGAAAGGAAGCCTTAACAGGCACATAAGAATTCACattggagagaagccttacgcttgccctcagtgtggaaagagttttgatCAACACGGGAACCTTAAGGTCCACATGAgagtccacaccggagagagccCTTTCACCTgtcaacagtgtggaaaaagtttcAGCCAAAAAGGAAACCTTAGTTATCACATGAgagtccacaccggagagagccctttcacctgccaacagtgtggaatgAGTTTCACTGTAAAAGGAAGCCTTACCAgacacatgagaattcacaccggagagaagccttacacaTGTCCTCAGTGTGGAGAGAGTTTCGAACAACTTGGAAACCTTAAGGTCCACGTGAGGGTTCACACTGGAGAAAAGCCTTACGCGTGcactcagtgtggaaagagttttgatCAACACTGGAACCTCAAGGTCCACATGAgggttcacaccggagagaagccttacacgTGCACTCACTGCGGAAAGGGTTTCGATCGACATGGAAACTTTAAAGCCCATGtgagagttcacactggagagaagccttacgcGTGCACTCAGTGTGCTAAAAGTTTCACTCAAAAAGGACACCTTGAGGTCCAcacgagaattcacactggagagaagcctttcacctgccaacagtgtgggaAAAGTTTTAGCCGAAAAGGAATCCTTGACAAGCACGTGAAAATTCACACTGGAGAGGAGTCCTTCGTCTGCCCACAGTGCGGGAAACGTTTCACTCAAAAAGCGAACCTTAAAGTCCACATTAGAagccacaccggagagaaacctttcACCTGCAAGCTCTGCGGGAGGAGCTTCTCACGAAAAGAAAGTCTTAAGATTCACATGAcaatccacaccggagagaagccgtttGTTTGCGctcagtgcggaaagagtttcagGTGCAAGGAAATCCTTAATTCCCACATGAGGGTCCACTCGGAAGACACCCATTTTAGATGTCATCAGTGCGGAAGGAGTTTCCGATTCAAAAAAAACCTCAATACTCACATGAGAGTTCACTCCGGAGAGAAGCCCTACTCGTGCCATCACTGTGGAAAGCGTTTCGTCCATAAAGTGAGCCACAAGAATCACATGAAGATTCACAACGAAGACAAGCCCTTCATGTGTGCTCAGTGCGGAACGTGTTTCAAGTACAAAGCCACCCTCAATGCCCACATGAGAGATCACACGGGCGAAACTCCGTTCACCTGCAAActgtgcgggaagagcttctcGCATAAAGGAAATCTTAAGACTCACacgaggatccacaccggagagcaGCCGTTCGCGTGTGagcagtgtggaaagagtttcaggCGGAAAGAAACCCTGGATTCCCACATGAgagtccacaccggagagagccCTTACAGCTGCAAGGTGTGTGGGAACGGCTTCTCGAGAAAGGGCAACCTGAACACTCACATGAAAATTCACACCGGTGAGAAGCCCTTCGTTTGTGACCAGTGTGGGAAAAGTTTCGGACGCAAGGAAACGCTTAATTACCACATGAGGATTCATTTAAGAGAGAACAGTTTAACGTGCCAcgagtgtggaaagagtttcacggACAGTAATCTCCTCAAGAAGCACGTAGTGATTCACATCGGGGATAAGCCTTTCATGTGTTACTTCTGTGGAAAGACTTGCAAAAGCAAATCAAACCTTGAGAATCACATAAAAGTGCACACCGGGGAGAAGCCGTTCACCTGCCAGGAGTGCGGAAAGGGCTTTACAGTGAAAGGGAACCTTCACATTCACATGAgagtccacaccggagagaagccttacaagTGTCCTCAGTGTGAGAAGTGTTTTACGTATCCAAAAGACCTGAAACGTCATATGCAAATGAAATGCGAAAATAAAGCCGTGTTCTGAGTGTAATAAGGTTTACCAAGCGGAACGTTTCCAGAAACCGCCTGCACTTTATTTGGAGTCTTTGTGCAAAAGGCTTTAAATAGtcaatcaatttaaaatatgtacgTGCACACAATACTTTTTCAGAACGTTGGTTCCCAGCCATATTCCTGGAGCACGCGTCTCTTTAGTCAAACTCCTGATTCAGCTCATTACGTTCAGAGACATGCAGCATGGGTTGTGTTGGGAGATCTGGGAATGtggtttggtttatttttgatGCCATTCGATACCTCAGACAAATAGTAGATCAGGCATGGGCCACTCTGGTCCTGGGGCCCGTTCTCTAAAGCGCATCTTTTTGGCTGTCTCAGATGAAAAAGTGCTGATTTCTGTGATTGAGCCGGTAATCAGGTGTCGGTAGGAGAGGTTTGTACAGCGGATCATTGCACATTTACTGACCGAACCAAGAAAGATCCAACATGAATTCATCTTATAAGATTGCCGAAATCGCGCAGTGTGTTTTGGGCATAACAGTTTGATTGTAGTTCATTTTCACTTGATTTTGAAGCTCTTCTTGGAGTTGCCGTCATGGCAACAGGTCCATAAATTAATCCTGTACAAATTCTATAAagtgtgaataaaaataactgggaatcatataaatatattaaaaacagtacatgttttatttatttattataacatgtATGTCGTTTTGTTCGCTCTGCTGTTTCTTTCTAAAAGGTTAGCTCCAACCCTAGTCAAACACACCTAAACAATCTACTTGTCCTTTTGCGTCATTGACACgttattttcctatttaatactgtaaaactgctttgacacaatatgtattgttaaaagtgctgtaGAAATAAAAGTGCCTtgacttgatttgacttcaaGATCACTAGAAAGCTAAAGAGGCGGGTGTCTTTGATTAGGGTTGAATCAACTTCCATCTTCTGTTACATGCCACATTGTGAaagaaaaattatgaataaaatatttttagttaaagaATGCCCAGGTAAACgtgtttttcatttcttgtcTTAGAGTTTATGGATTTATGGATTACGATAAGCTTAGATGAAACATTAATTGGAAGCATGCTAGGTCAATTGCAGACCCCTAGGACCAAGGCTGAAAAAGGACAGGGCTGaaggcccgttcacaccaagaacgataactataaagataacggTATCGTCAGTTGATCACACGCTCGCCTGCTTGTATATTTCACACATATACGCTGTTGACGTGTTATATATCTTTTTCCAATtcctaaaactaataaaaacaagcaaatgtgGTTTAACCCTTACATAGTCCACGACTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133608 lncRNA downstream 11305 2427461 ~ 2427901 (-) True G90261
TU133539 lncRNA downstream 128077 2304214 ~ 2311129 (-) True G90211
TU133536 lncRNA downstream 140982 2287383 ~ 2298224 (-) True G90208
TU133535 lncRNA downstream 152997 2285542 ~ 2286209 (-) True G90207
TU133529 lncRNA downstream 154860 2239768 ~ 2284346 (-) True G90201
TU133632 lncRNA upstream 24307 2481370 ~ 2481642 (-) True G90271
XR_006252293.1 lncRNA upstream 43472 2500535 ~ 2502458 (-) True LOC122356206
TU133683 lncRNA upstream 164173 2621236 ~ 2623909 (-) True G90300
TU133705 lncRNA upstream 167841 2624904 ~ 2625273 (-) True G90312
TU133877 lncRNA upstream 439975 2897038 ~ 2897468 (-) True G90408
XM_043255117.1 mRNA downstream 292610 2093475 ~ 2146596 (-) True slit1a
XM_043255160.1 mRNA downstream 364428 2060300 ~ 2074778 (-) True nvl
XM_043255159.1 mRNA downstream 364432 2060301 ~ 2074774 (-) False nvl
XM_043255109.1 mRNA downstream 402107 2012695 ~ 2037099 (-) True heatr5b
XM_043255138.1 mRNA upstream 1817 2458880 ~ 2466266 (-) False LOC122356433
XM_043255137.1 mRNA upstream 1817 2458880 ~ 2466266 (-) True LOC122356433
XM_043256325.1 mRNA upstream 21520 2478583 ~ 2480329 (-) True gsta.1
XM_043255829.1 mRNA upstream 31364 2488427 ~ 2497421 (-) True LOC122356775
XM_043254726.1 mRNA upstream 150017 2607080 ~ 2608868 (-) True LOC122356217
TU133469 other downstream 194128 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 747271 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 882203 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 2261886 123194 ~ 177320 (-) True G89543
TU132495 other downstream 2371330 67327 ~ 67876 (-) True G89537
TU133689 other upstream 127133 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 169265 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 533355 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2215903 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 2215903 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile