RNA id: XM_043255262.1


Basic Information

Item Value
RNA id XM_043255262.1
length 2288
RNA type mRNA
GC content 0.45
exon number 3
gene id prop1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4441892 ~ 4446288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATCATCAGCTCAGTGAACAGCATATGAACACAACTCACTTTCTATTCTTGAATAAATCACGTTTTATCTGTGGAAAAGAACAGGCAGATCCTGGCAGTCTGGGTCTGGTTGACTGTAGACTCCCTCAGGAACACTAAGTCACCCACCTTGGCAAAAACGATGCTCATACTCGCCATGTCTCTGACTTTTATCTCGTCTGTCAGAGCTCTTCAGTCCAGTCCAGCAGAACCAATCTGATTCTTCATGCTTgacaaacaaataatgtttaattaaaaagaaactctCATTGCAATTCATTACTGTTTCACATTGCAGCCGACTGGTGGTGAATGTGTGCATCACTTAACACCTTttgtgaaaaagtgaaaagctgtgtgtttgcaaaaaaattctgacggcacccattcagtgcAGAGGATCCATTTATGAACAAGAGATGTAATACAATTCTAATCTTTATAATCTATCTATATACTGTTTTAACCACCTTTGATCTGTCCTAAAAATATGAGGTGTTCAGAAGATCccaaacatttcttaatatcgAAGCGTGTAAGCGATACCAGAAGAGTGTAAGCGACATTTTGGGTCAAACGGAATAAATCAAACTAAAGCTCTCTTTACTGGCAAAAGTCAGCCATGATTTTTGTTATAAACAACTATAAATGGTACACAAAGTCATATCAAAGTACAGTAAACCTGAAATGTCACTTTCTGGTTCTCACCCTGGATATGAAACACTTGGTTATATTGCTTTGTGCTCAAGTGGATCCAGAGGCCATCTATTTATGTTTACTCTCCCTCTGGTGGTGGGAAGAGTCCACTACAAAGTTCTTCTCAGAATTCCAAGTCCAATATTCCAAAAATTCCAATATCATCAGCGAGACCCAGATTTATCGGGAACATTTTTGCTCACAAATACTTATTATGTCAGCAGACTAAATTCGCTGCAGTTTTGCTTTACCATCGACGCTGACAGTGACAGGTACGGGGCGAGAGGTGTGACTGCTCTGTGATGTCACACCGGACAGCGGTGAAAAAGCAGAGCTCGTTTTGGACGGGGGTCAAACCAGAGGGACTCTGAAATGGACACGGACAAACCTCAGCAGCAGTTCTCTGAAAATTACTCCGAGGTCACCGTTAGCTCGAGTGCAGATGTTCAGAATCGCCCGAGAAAAGACTGCGGGACACCTGAGAGCGTCCGGGGCGGAGGAGGGCGAGCGAGAGCGTACCCTTCGCCGTCCCGCAGGAGACACCGAACTACCTTCAGCAACGAGCAGCTGGAACAGCTGGAGTTAGCTTTCAGACAGAACCACTACCCTGATATCTACTACAGAGAGGAGCTCGCCAGAGCCACCAAACTCAACGAGGCTCGCATACAGGTGTGGTTTCAGAACCGGAGGGCCAAGCAGCGCAAGCAGGACCGCGTCTCTCAGAAAGCGCTGCCGGTGGCCGTGATGCCGGGACGAGGGCCTCTCTTCGGCAGCGTGTGCGTGTCTCCCTCCGCCGTGAGCCGGCAGTACCAGTGCGCCCATTCACTGCCGCACATCCCCCGCTTCCCCTCGGTGCTGCCCCCCGGAGGATACCCACCCCAGCCGTCCTCTGCTCCGTCATCGCTCTCCTCCAGACAGCCTGAAGACTGGTACCTGCGCGGCCTCGGACCAGCCACCGCTTCCGTGCTCTCCCTGGCCTCCGCGTCCACGCCGGAAACAACTAGTCCCTGGAACTAGAGCGCGCGCCGTTCCGCGAGCGCTTCACAAAGCAGAGCGAGTCAAGTTTTTCAGCGACAAAGAACGATCGACATTTTCTGTCTTTATTAAAGTTGCAACCGTCGCTTTATTACACAGACGTTTCTCTCAATTATTGCTGCGTCTACCtagacaaaaataatatgaatttatgTCGATTTTCTTTGTTAACACTGAACTGTTACAATTGAACTAGATTCGGTTTATATTGAACACACTGCAGACTTTATGTGAGGACTGTTATGAAAATGTCACACTAAGATGAAACGTACAATAGACCAATTGATTACAACAGATTTCCTTTCAGTCATGTACAGCTTTggtagaaataaattacacatggTTTATGTCAAGAGCTTCTTGCCATTTTGTGTACGTAAAATTAACAGATATGGGTCAaggacaatataaaaaaaaacaatatgtgttATGTTGACAGAAATGTGCTCTCAGTTGTTATGTTGTTTACatacagttttgaaaaaaaaaaaacattataacataACCAAGATACATTAGTATTGTTTCTGAATTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134375 lncRNA downstream 28121 4390355 ~ 4413771 (-) True G90750
XR_006252372.1 lncRNA downstream 94368 4338842 ~ 4347524 (-) True LOC122356721
XR_006252373.1 lncRNA downstream 99172 4338842 ~ 4342720 (-) False LOC122356721
XR_006252374.1 lncRNA downstream 99205 4338842 ~ 4342687 (-) False LOC122356721
TU134189 lncRNA downstream 388506 4053138 ~ 4053386 (-) False hcar1-3
TU134435 lncRNA upstream 98733 4545021 ~ 4570758 (-) True G90802
TU134419 lncRNA upstream 102823 4549111 ~ 4622804 (-) True G90786
TU134415 lncRNA upstream 114488 4560776 ~ 4584961 (-) False G90785
TU134416 lncRNA upstream 114488 4560776 ~ 4584961 (-) True G90785
TU134496 lncRNA upstream 244597 4690885 ~ 4698612 (-) True col13a1
XM_043255258.1 mRNA downstream 4400 4404523 ~ 4437492 (-) True ttc7a
XM_043254528.1 mRNA downstream 88141 4351284 ~ 4353751 (-) True epcam
XM_043256156.1 mRNA downstream 116417 4245731 ~ 4325475 (-) False thada
XM_043256155.1 mRNA downstream 116417 4245731 ~ 4325475 (-) False thada
XM_043256154.1 mRNA downstream 116417 4245731 ~ 4325475 (-) True thada
XM_043255442.1 mRNA upstream 15734 4462022 ~ 4471950 (-) True socs5b
XM_043255642.1 mRNA upstream 160936 4607224 ~ 4611108 (-) True galm
XM_043255633.1 mRNA upstream 180100 4626388 ~ 4672250 (-) False hells
XM_043255632.1 mRNA upstream 180103 4626391 ~ 4633648 (-) True hells
XM_043254512.1 mRNA upstream 226678 4672966 ~ 4689168 (-) False LOC122356061
TU133931 other downstream 1420030 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 1814735 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 1856561 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 2196814 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2749957 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 226678 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 226678 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 226678 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 226678 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 226678 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile