RNA id: XM_043255289.1


Basic Information

Item Value
RNA id XM_043255289.1
length 2514
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC122356518
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14200850 ~ 14209385 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGATACCGGACACCGGGAGACGACAGCGCAGCGAGAGACGgtgaactacaaaaaaaaaaaaaaaaaaacatgaggcCGTCACTATGTCAAAGAAATGGAGtaacatttaaacttaaaaagaaatCTTGAAGATCTTTGTGGGTGGAGCTCTTTGGCAGGTATCTTTTCTTCCACCTGGGATCCGCTGACAGGGCGACCAGctctagAAAATGAAATCTCACGAGGGAGAACTGGAGAGAGAGATCTCTAAGGTTCAGGGCATGGTGTGTGAGCTGCGGGCAGGGTTTTCTCGTGCGCTGCTGGAGCTGAATCAGATTCAGCAGGGAGACACTGAGCTGCAGAGCCAGCTGGAGGACACAAGGCATGGCTGCAACAAGCGCGCCCTTCACCTTGAGAGTCTGGTGCTTTCCCTCAAGgaggagctggaggaggtaCGCTGTCAGTTTCGTCAACTCTGTGAGACACAAGACAGGAAACCACCGGAGAATCCAGGAATAGAGAAtAATGGAGTGGATGACAGTAGCGGACAGAGTAATGGTGCAGCAGAGGCTCCTCCCCTTTCACCTGTGGGCGGAGATTTCCTCATACACTGTTACCTGCAGGGATTACAGGTGTGGCAATGGGCCAGACAGAATACAGGTGCGGATTCTCTTTCCTGCCACGTGACACACAGCTGCCTGCGGCGGGGCAGGAGGCGGGGTGTGGTGGAGATGCTGCTCCGGTCTGAACGCGATCACGTGTCTAGTTTGAACCAGCTCTATGAGAAATACAAGTCTGCTGAGCAAAATGTGGCGTTTGTAAAGCACATCGATCAGATGCTACAGCGCCACCTGCTGTTCCGCAACACCCTAGAAGAACGACTGACCACGGATGAGAGAAGCTGTGCTGCCGGGGATGCTTTTCTTAACCTCACTGGACAGAACGATAAGTCTTTCTCTGATGCATATCTTGGATACGTTGCCGGTCTGGGAACTGTCCTGAGAAGAGAGATCAGGGCAACTTCACCCCACAGCAATCCACAAAATGCAGAGgaggagaaagagagctTCAGATTGCTCTCGCTACTGTTCGCTCCTGTTTCCCGCATCCACACATACCTGAACATCATACAGGCCTTGTTACGCAGCTCTGGCGCTGGGCATGCAGACTGGTGTTCACTACAGGAGAGCGAGCGGGCGCTGTGGGGCCTCTGCACAAGCTGTCACATGACACTGGCGAAGGCGGGGCCATGCGAAGAGGGGGTGGGGCCTGAACAAGGTTTGAGAAGCAGGTGCTGCGCCGAGAGCCCCGACTGTGGCCCTTCCGCTTTTACCAAGTACTGTGCCAGCACTAATGCGGATACAGCCAGCGTCGCAGCAGGCGCAGGCATAGACAGCACTGTACACCAGAGGAAATGCTGTCGTGTTGGCATTTCACGGACGCTGCCTCGGCCCAGTGGCATTTTAAGAAATGGCCGAGAGCATATGTGTGATGTGCCCCCTGGTGGCTGGACAGCAGAGTACATGTGGAATGGCAGCGCAGGGCAGAGCCACACGGGTCCCATCTGCGTCCCCTTCCCTCGTCATCCTAGAGAAGCCGGGCTCTTTCTGAACCGCGTGCCACCTGTAGGTGTCGGGGGAAACCTCAGCACTGCTGCCAAGAGTCAGAGCTCCTCGGCTGGTCTGGCCGTGCGCGTGTGTGGCTCCCCGGGGCTCAACGGACGGGTGTACGCCTCTGAGCTCTACCCTCCGCCGCATCGTCTCGATGACGGGGACACAGACTGCGACGTGGCCGACGCATCCGTTTTTGACTTCTCTTCGGTAACGACCTGCAGCCCGGATGAAACTCTGAATCGGCTCCGGGGAGCGGAAGCGCgagatgatgaggatgatgatgaagaggacAGCGAGGTTCCAGTTCTCCTCAAACCCTCGTACACTCACAACGCTTCAGCCGCGCAGGCAGGGGGAGCATTGTGCATGCAGTGGCAGATTCCCAGGCGGGCTCCTATTCCTGCCGAGGTTCGCATTGGAGCGCAAGGAAAGACACGTGCCCCGAAACCACACAGAATCCCCGCCAGTGCCTTCCGGCCGATTTGGGACCCGgcttactcacagGGCGATGCGACTCCTGCAAAAGAGAACTCTGTGTCTTTCAGTGCAACCAATCAGATCATTAATCAGCAGCAAGAGACCGACCAATCACGATCTGCATACAGAGGGACTGGAGTCCAGCGGGCTGAAGCGGTGTGGCATGACAGTGAAGACAGCGAAGGGCCCTGCAGTACAGTCTGACACTGATGCAACTAACCATACACAGGGAACGCTTCTACTTCATCCAATGAAAtagttggaaacttttttttaaaaaatctgaaattacaAATGACGACTACTACTCACTGTGAACTGACATGAAGCCATGACCAGCGCTAAATTCAACATCTTAAGCATGATGTGATTTGTCAGAGAGAAATTTTGATGTAATAGAATGCACATAAACTGAGGAATAAAAACTTTCAGTAGAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138684 lncRNA upstream 11857 14185391 ~ 14188993 (+) True gmfb
TU138492 lncRNA upstream 39530 14031382 ~ 14161320 (+) False G93592
TU138706 lncRNA downstream 15598 14224983 ~ 14227711 (+) True G93723
TU138719 lncRNA downstream 34023 14243408 ~ 14245542 (+) True G93733
TU138722 lncRNA downstream 39380 14248765 ~ 14249522 (+) True G93736
TU138733 lncRNA downstream 67230 14276615 ~ 14276875 (+) True G93743
TU138738 lncRNA downstream 73384 14282769 ~ 14284777 (+) True G93745
XM_043255297.1 mRNA upstream 4598 14191182 ~ 14196252 (+) True cnih1
XM_043255298.1 mRNA upstream 12470 14185315 ~ 14188380 (+) False gmfb
XM_043255945.1 mRNA upstream 184980 14012249 ~ 14015870 (+) True LOC122356869
XM_043255518.1 mRNA upstream 263981 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043256285.1 mRNA downstream 22989 14232374 ~ 14236033 (+) True dmac2l
XM_043256281.1 mRNA downstream 58992 14268377 ~ 14276439 (+) True atl1
XM_043256249.1 mRNA downstream 130506 14339891 ~ 14344861 (+) True tmx1
XM_043255622.1 mRNA downstream 144730 14354115 ~ 14367244 (+) False frmd6
XM_043255619.1 mRNA downstream 144733 14354118 ~ 14369557 (+) True frmd6
TU138522 other upstream 291247 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 984093 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1611997 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1625638 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2596626 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 144731 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 897073 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1045689 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1086464 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1655454 15864839 ~ 15870625 (+) False hps1

Expression Profile