RNA id: XM_043255301.1


Basic Information

Item Value
RNA id XM_043255301.1
length 4500
RNA type mRNA
GC content 0.47
exon number 12
gene id rin2a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24857219 ~ 24887322 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGTTTGTTTTTGCCGGGAGAGGTCGCATGCTTTAACGCGGCTATGAGTCTTTCTTGCGAACTACAAGGAAGCGACCTCTTCTCGGTCTTGTAGGAACATCTAAAACTGTTAACATCAAGCGAGCCTTCGGAGGAAGATCGTCCAGGTCTTATAAATGCGTAACTGCGCTTTTTCCAGCGGGTGTTTTGGTTCCGTCCCGTCGAGAGACCCAGCCTGACACAGAAGAGCTGCATACACCCTACCATGTCTACAGAGATGATGATGCAGTCCTGCCTCATGGACCGGAGCAGCAGCTTTTTTAAGCTGATTGACACATTCTCCACGGAGATCTCAGAGCTAAAGCAGGAGATGGTTCTGCCAGCCAGAGAGCCGGAGACCGAGATCTTACAGGGTCTGGAAGGAGAGGTCAGCGGCCTTTTCCTTCAGTCTTCTGCCTGCGCTGGTACACCTGGGGTGAGGGATTCTGGATATGACTCTCTACGCAGACGCATGAGCATCCTGGACAGACTGATGCAGACACACTCTGTATGGTTGTTACTGTCTCTCAGTGATGAGGAAGCCAGACGCATTCTGCAGCCACAGCCGGCAGGGAGTTTTGTGGTGAGGAGGTGTTATAAACTGCAGAAAAAGGTGATTTCCCTACGTATGGACAGTGACACACTGATTGTTCGGGACTTCCCAGTTAAAGAGAGCCAATATActttttcTCTGGAGGGCTCAGGGATCAGCTTTGCAGACCTCTTTCGACTGGTGGCGTTCTGCTGTATCAGCAGGGACGTTCTGCCCTTCACACTGAAGCTGCCCGAGGCCATCGCGGCTGCAAAGACCCCTAAAGATCTGGAAGAGGTGGCCCAGTTAGGAagaaGTTTCTGGGACTCTGAACTGTGCAATAAGAGGAAGTCTTCTGTGTCTGGGGAGACTGAGTATGAAATTTCACAACACAGACTAAAACAGTGGTTATCCCCAAGAGTTCCGGCCATCCCATTTACACGGACCCCTTCTGAACTTGAATGCAGTCAATCCAACGGAGCGCTGTGCTTCATCAATCCCCTCTTCCTGCAGACACACCAAACTAAACCTTCACCTAAAAAGCAGGAATCATCCCCAGACAAGAACAAGAACAGGGAAGACAGCATCTTTTGCAGCggaaaaagcacacaaaacaaATCACACGCAAGTGTGAGTAGATCCAAAAGCGAGAGATCGCCGCCACCTCGGCCCCCACCTCCCCGCTTTGCCTCTGGGAGATCAGCAGTTCTTCGTAAACAGAAGACCATGCCTGAGACGGTCTGTTGGATCAAAACCCCTCAGGAAAAGAGCAGCCTGCTGGGGAGGCTGGGATCATCCTTCAGTTCCCTATCACCCTCATCCTCCCCACCCAAAAAGTTCAGTAAACCCATCCTGGTGCCCACATCCCGCAGTAAGAATTCCTCCGGTCTGCTCGATGCAGACGGCCTCCGCTGCCACATGGCCCTGGACGACCAGACCATTGAGGAAGCCGTGTCTTGGAGCTTGGCCAAGCTGTCCTCACGCAACTCCACTGCCCTGGAGAACGGCAGCCCTGCAGATGAGCGCTGCTCCACCGGACGAGAGCGTCTGAGTGATATCAGCATCTCCACCTCATCCTCAGACTCTCTCGACTTTACCCACAGCTTCTCGATGCCCATGGAGGCCAGTCCTTCTAGAACCGAGCGGCCCACTGGGGACAGCAGCctagaagaggaagaagaggaagaagacgATGGCATTAACTTGGAGAGCGACCAGGAGGTGCCACCACCCTTCAAGTCAAAGAAGCAGAATGGCGCTGGTACGTTCGTGCTGCCTCGTGCCCTGAGAGGACAATTACGCAAGATGAGCAGCGTTCTCAATTCTTTAATGACGCCCGAAAAGAGAGCCATTCGGAAGATTGTCGAGCAATCCAGGGATAAAGGGACTTACTTTGGCTGCCTGGTGCAGGACTATGTGAGCTTCTTGCAGGAGAACCGTGGCTGCCACACATCAGGCCTCGACCTGTTGCAGACTCTCAGGCAGTTTATGACTCAGATGAAGTCCTACCTGCTGCAGAGCTCAGAGCTTGACCCGCCAATTGAGTCCCTTATCCCAGAGGATCAAATAGatCAGGTGATGGAGAAAGCCATGCACAAGTGTGTGCTGAAGCCTCTGAAGCCTGTGATAGAGGCCGCTCTGCGGGACTTCCAGGTGAGCAGTGGGACTTGGCAGCAGCTGAAGGAGAATCTGGTTTTGGCCAAAGCCAAGCAGCCCCAGGAGATGGGTGTGGATGGAGCTCTGCCTCCTGACCCCGTGGCCATAGAAAAGATTCGCCACAAGTTCCACAACATGTGCAAGATGTACTCACCAGAGAAGAAAGTGTCTCTGCTCCTCAGTGTGTGCAAGCTCATTTACACCATAATGGAGAGCAACTCAGGAAGGATGTATGGCGCAGATGACTTCCTGCCCATGCTTACGTATGTGATGGCCCAGTGTGACATGCCACAACTGGACGCTGAAATAGAGTACATGATGGAGTTACTGGACCCATCACTGCTTCATGGAGAAGGAGGCTATTACCTGACCAGTGCATATGGGGCGATGTCCCTCATCAAGAACTTCCAGGAGGACCAGGCAGCTCGTGTGCTGAGCTCTGAGACCCGTAACACACTGCACCAGTGGCACCGTAGACGCACGACACAGCGAACTGCTCCAACTGTGGATGATTTCCAGAATTACTTGCGGGTGGCGCTGCAAGATGCAAGCAGCGGCTGCACAGCAAAAACCCTTCAGGTGCAACCGTACGCCACAACAGAGGAAGTGTGTCAGATATGCGCGATCAAGTTTAAAATTTCGGACCCGGAGAACTACGCCCTTTTCCTTCTGATGGATGAAACCACACAGCAGCTGGCCCCGGACACTCACCCGCAGAGGATCAAGGCCGAACTGCACAGCCGCCCGCAGCCACAACTCTTCTACTTCGTGTACCGCCAGATACAAAACCTCACTGTCCCTTCAGACCAGCCCAATGACAACACCTCACCCAACTGACAGAGCAAACCTGGTTTCCATCAGGTCCTCTCGAAACTCCTTCTCAGCCACATTTATTCAACTTCTTCCCTAGGAGCACTGCTTATGTCTGcaatgctttgaaaaaaaagttggaGGGAAGCGGAATATGTGCTTAGAGGGAAATAGGGAAGGAAGGATGTGTCTGACAGATGCAGCGTTTTTTTATGCACCGTCTTCACTATTTTCACAACATTTTGGGAAGTGGCACGCGACCATCACGAGAGAGCAGCCGTACTCAAACTGCGAATGTTACAGTGTGCCTGTTTATTTCTTCATGAATATTCAAACACATTCAGGTCAGCAGAGAGGAAAAGGAGCATTTTAGTGTTAATGGTGTTTATCTAAGCTTTGCACATTCCACATCGAACACACTCTAGAATTGTGCCTCCCAGAATTCTACACACCCATCCTTCAGCATTCATTCAGTTACATGGACATCTCAGTCCCTAAGGACACTGTGGATAACTGTTTGCTGATGTaaacctttttgttgttgttgttgttatttgcAGTTGCTGGTAAACTGCATTCTTTTTATATAAGATTTATTGTTATGATATTGCATGAATTTCTGTGATGATAAGAACCAGGCATTGTTGCCAGTGATGTTTTatcatattgtttttgtatgaaTTAAGATCATTAAGTTTTGTTAAAGTCATCGGTAGTAATGGAGGTAGTGGAAATGGTGAGGTTTGTTCTAAAATACTGTACTACTGACAAGCTAAACATTTAGGGCTTGTGGTAATCTGGATCTCTGTTGTACTCATTTTGGATTTGACTTGCAGACAAAGGGTTTTGGCAGGTAGGACAAGTGGAAAGATCAGTggaaagtaagaaaaaaataagaaataaaggaCGTGGATGTTTTAAGCAGGTTTAGAGTCATTGGTAGAAAATGTCAAcgaacagaaatgttttttttttgtcactgtaAAGTGCTATCAGGGAAAACCGAGATGGATAAGTCACATAGAGAAAAATAGTTCTTTAACATTCATAACTATACTCATAACCTCTTAACTGCAATAACTTACCAAGTATTTCATGCTCTACTAATGTACtttatgtttgcatgttttgatGTAAACTCGgggcattgttttgttttttttgttttgtttttaagagacCAGGGTGCTGAAATGCTCTAATCCCGTGTAACAATAATATAGAAACACTAGTCACATCTGAAACACAAACTACATGTTTCAAGtcgtgaaatgtattttaacaagatattttaagtctgttaaatgtatacatatttatatgcaatCTGTGCAGGAATTTTTCACAGATTTGAAAAGTCTTGATTCAAAAATGTTGTGtattcatttggaaaaaaaagctcATCCTCATTCTTTAGTAAGTTCTAtgtatttgactttttaaatgtactctTTTGCACAATAAATTGATGTTGAACATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142582 lncRNA downstream 140257 24714219 ~ 24716962 (-) True G96436
TU142578 lncRNA downstream 143761 24710744 ~ 24713458 (-) True G96435
TU142552 lncRNA downstream 181273 24631425 ~ 24675946 (-) False G96415
XM_043255516.1 mRNA downstream 985 24851403 ~ 24856234 (-) False slc17a5
XM_043255515.1 mRNA downstream 985 24851403 ~ 24856234 (-) True slc17a5
XM_043255511.1 mRNA downstream 5919 24846449 ~ 24851300 (-) True eef1a1a
XM_043255512.1 mRNA downstream 5981 24846449 ~ 24851238 (-) False eef1a1a
XM_043255513.1 mRNA downstream 6002 24846449 ~ 24851217 (-) False eef1a1a
XM_043254674.1 mRNA upstream 793 24888115 ~ 24890861 (-) True si:dkey-187a12.4
XM_043256104.1 mRNA upstream 4631 24891953 ~ 24951267 (-) True slc24a3
XM_043255976.1 mRNA upstream 77532 24964854 ~ 24966345 (-) True soul2
TU142467 other downstream 453575 24399123 ~ 24403644 (-) False fgf8a
TU142459 other downstream 512589 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 586770 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1861620 22994663 ~ 22995599 (-) True G96053
TU141977 other downstream 2034705 22821981 ~ 22822514 (-) False G96036

Expression Profile