RNA id: XM_043255317.1


Basic Information

Item Value
RNA id XM_043255317.1
length 2842
RNA type mRNA
GC content 0.50
exon number 11
gene id esr2b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14377594 ~ 14393187 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAAAGTACAATAAGACATAGCGCTCTAGGACACTACCAGGTGTTCGCATGTCTCTCACTTTTTCTCTCTTGCGTCTGTTGCTAACTTcagtgctctttttttttctctttgcgAGCGCAGTTGCCTAAATCCGGTCGATAGGCTGCGCAGCGCGTTCACGGCTGATCAAACAGGTCTCTGCTCTCCGGCTCACATCACCTGCTGCCTGCCTGCTATCGGCACGTTTTCAAAGAAATTTTGTAAAGCAAGCACTTCCTCTGACACTGTTGGGCCTACAATGCAGTAGTCTGTCAAGCCAGGACCTCGCTTGAATTCTCCAGAATGAGCTCCTCCCCTGGTCCGGCCCCTGCTTCAGCCACCCCTGCCCTGGACTCCGGGAAGGCCAGTCGAGGGGACTCGCCTAACACCTTACCCCATCTGTACACGTCCCAGCTCGGCATGGACAGCCAAACCATCTGCATTCCATCTCCGTATGTGGAAGCCTGTCAGGATTATTCACCACCGCATGGGGGAGAGATCAGCCACGGAGCCTTAACGCTCTACAGCCCCGTGTCCTCCACAGTGCTGGGGTACACTCATCCCCCCGTGTCCGAAAGCCTGGTCCCTTTAAGTTCGACAATCTTCTGGCCTCCCCACACCGCACTGGTCTACAGcgaaacacacgcacacaccacCTGGGAGGACGCCAAAACACACACCATTAACCAGGGCAGTCCTGTCCTTACTCATGCAAAGCTGGTAGGGCAGCAACCGGATGGTGATGAAGGCTTGAATCCTTCACCAGGCATTTTGAGTAAAGGAGACACACACTTCTGTGCAGTGTGTCATGACTACGCCTCTGGGTATCACTATGGTGTCTGGTCTTGTGAGGGGTGCAAGGCTTTTTTCAAACGCAGCATTCAAGGGCATAATGACTATATTTGTCCAGCTACCAATCAGTGCACCATTGACAAAAGCCGACGCAAGAGCTGCCAGGCCTGTCGACTCCGCAAGTGCTATGAAGTGGGCATGATGAAGTGTGgTGTGAGGCGGGAACGCTGTAGTTACCGAGGTGCCCGTCATCGACGTAACTCCCAGAGCCGAGACATCTCAGGCGGGGCTTTAGGGGTCAGAGTTCGTTCCCGGCCTCATTTAGAATTTCCCCTCAGTCCCACTCATCCACTCTTCCCTTCAGGGGACAGAGCTGAGGGATGTGGCCGGAGCCTCTCTCCAGAGCAGTTGGTCAATTGTATTTTGGAGGCGGAGCCTCCTCAGATTTACCTGAGAGAGCCAATAAAGAAGCCATACACGGAGGCCAGCATGATGATGTCACTAACCAACCTCGCTGACAAGGAACTGGTGCTCATGATCAGCTGGGCGAAGAAGATACCAGGTTTTGTGGAGCTGACTTTGTCTGATCAGGTGCATCTGTTGGAATGCTGCTGGCTGGATATATTGATGTTGGGACTGATGTGGAGATCCGTGGATCATCCCGGGAAGCTCATCTTCTCACCTGACCTCAAACTCAACAGGGAAGAAGGCAACTGTGTTGAAGGCTTCATGGAGATCCTTGACATGCTGCTGGCCACCACCTCCAGATTCAGAGAGCTGAAGCTTCAGAGAGAGGAATACGTCTGTCTCAAAGCCATGATCCTTCTCAACTCCAATAACTGTTCAAGCTTGTCACAGACTCCTGAAGATGTAGAGAGCCGTGGGAAGGTTCTGAGGCTGCTGGACTCTGTGACTGACGCTCTAGTTTGGACCATCTCAAGAACAAGCTTGTCTTCGCAGCAGCAATCCATCCGTCTCGCTCATCTGCTAATGCTGCTCTCACATATTCGACACCTCAGCAACAAAGGCATTGAGCATCTGTCAACCATGAAGAGAAAAAACGTGGTGCTGCTGTATGATCTTCTGCTAGAGATGCTGGATGCCAACACATCCCAGAGCAGCCGGATGCTGGCGGCTCACACGGAAGCCTCTCTCCGGTCGGACACACAGACCACAGACCACCCATCCAGACAGTCTGCACTGAAAGAGAGCAACCTGGAGACCTGGGACAGTACACAAGCTGAAGAGACAGTTGATAAGACATTACATTGTAGCATGCATCGAGTGGGGATGGACACAGACTGACAGTATCCCTTCTGTGGTGTAAAAATCTCCCTGGATGCAGCAATGGATATGAATCCAATATCTGAGCCACTTATCGTCCAATGTTGGGTCGAGGGGGTTCAAACCAGAGCTGGAAAAAAACTTGACCAACGACAACCTGAACCAAACAGGGCTTTCAACTGGCTCTCAGTCTTGCTCTAACACAATGCAGTTTGAACTGTTGCTTTCCTATTATGCCGTAATGTCAACCTGAAGAGGAATACATCTTATTCAAACCAATCGCATTTTCAGCATTCACAAATGGAATCCTTTTAATGGCTGGTTCCATTAAATATAAAGCGTGTAATTTCTGTGCTAAACACAGTAGCAAGAAACTGTTTAAACACTCCCCCATCTGTCATTATTCAGCAACCAGCTAGCACCACCCCTAAATCATGCCATTGGTTGATCAAGAGCTATGTTGTGTTCTTTTGAGCCATTCAAACAGATTGGCGAAATTACACactgcacatttaaatatttggtttGCCATCCAAGATGACAGAGAACCTCTGACTTGAACCTGACTGTTTCTCTGAAGACCGGCCAATATAAATGAAACGCacacttttaatagtttatgcATTTTGTACTCTGCGTCTGTGCATTTGTAAGACATTGGAGTGCTGTTGTTTGCGGCTCTGTGTTGCTTCTCGTGGTTCATAAAGTACTTGTCACTGGCAGTAAATAtaacgcttttaaaaata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030520 intracellular estrogen receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138760 lncRNA upstream 55510 14318780 ~ 14322084 (+) True G93766
TU138749 lncRNA upstream 69212 14306996 ~ 14308382 (+) True G93755
TU138738 lncRNA upstream 92817 14282769 ~ 14284777 (+) True G93745
TU138733 lncRNA upstream 100719 14276615 ~ 14276875 (+) True G93743
TU138722 lncRNA upstream 128072 14248765 ~ 14249522 (+) True G93736
TU138820 lncRNA downstream 138835 14532022 ~ 14532317 (+) True G93818
TU138847 lncRNA downstream 170204 14563391 ~ 14567101 (+) True G93834
TU138848 lncRNA downstream 175138 14568325 ~ 14568913 (+) True G93835
TU138849 lncRNA downstream 175968 14569155 ~ 14569697 (+) True G93836
TU138852 lncRNA downstream 182193 14575380 ~ 14576330 (+) True G93839
XM_043255619.1 mRNA upstream 8037 14354118 ~ 14369557 (+) True frmd6
XM_043255621.1 mRNA upstream 8037 14354679 ~ 14369557 (+) False frmd6
XM_043255620.1 mRNA upstream 8037 14358752 ~ 14369557 (+) False frmd6
XM_043255622.1 mRNA upstream 10350 14354115 ~ 14367244 (+) False frmd6
XM_043256249.1 mRNA upstream 32733 14339891 ~ 14344861 (+) True tmx1
XM_043256342.1 mRNA downstream 91879 14485066 ~ 14487500 (+) True gphb5
XM_043256032.1 mRNA downstream 226978 14620165 ~ 14630849 (+) True phf3
XM_043256277.1 mRNA downstream 446595 14839782 ~ 14842432 (+) True zgc:171579
XM_043255731.1 mRNA downstream 480728 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA downstream 480735 14873922 ~ 15011010 (+) False adgrb3
XR_006252357.1 other upstream 10459 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 467991 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1160837 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1788741 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1802382 12571631 ~ 12575212 (+) True G93296
XR_006252421.1 other downstream 713271 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 861887 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 902662 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1471652 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1471652 15864839 ~ 15869803 (+) False hps1

Expression Profile