RNA id: XM_043255327.1


Basic Information

Item Value
RNA id XM_043255327.1
length 2844
RNA type mRNA
GC content 0.52
exon number 10
gene id polh
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2482202 ~ 2488135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCTGGAGGGCGGTGAACAGACTCGGCGCGCGACGCTCGGGCAGCAGAAGAAGAGCGCGCGCTGAGCGTCTCTCCCGAGTGGAAGTGTCCATGGATTTTGGGAAGGAGAGAGTGGTCGCGCTGGTGGACATGGATTGCTTCTATGTGCAGGTGGAGCAGAGGATCAACCCCGAGCTCAAAAACAAACCCTGCGTGGTGGCGCAGTACAAGACGTGGAAAGGCGGAGGCATCATAGCCGTGAGTTACGAGGCCAGAGCTCATGGGGTCAGCAGGAACATGTGGGCAGATGATGCCAGGAAGCTCTGTCCTGACCTGCAGGTGGCCCGAGTCAGAGAGGCTCATGGGAAGGCTGATCTCACGCTTTACAGGGAGGCCAGCGTGGAGGTGATCGAGGTGATGTCGCGCTTCGCCGTCATAGAGAGGGCCAGCATCGACGAGGCGTACATGGACCTCACGGGCAGCGTCCAGGAGCGACTGAAGCACATGAGCGTCCAGGACATCACGCCGCAGCAGCTGAGGAGCACCTACGTTCAGGGCTTTCCACAAACCAGCGATGGACCGAGTGAGGATGCAGCCACAGATAAAGAGGAGCGGCGGCTCCGGGGCCTGCAGCAGTGGCTGGAGCGTCTGTCCTCGAGCCCGGAGCTGTGTCTGACCGTCGGCGCTCTGATCGTGGAGGAGATGAGGGCGGCTGTGGAGGAACGCACCGGGTTCCGCTGCTCCGCCGGCGTCGCGCACAACAAGGTGCTAGCCAAACTAGCATGTGGCTTAAACAAGCCTAATCGCCAAACAGTTTTGCCGCTGGGATCCGTTCCAGAACTCTTCAGCACTCTTCCCATCAGTAAAATTCGTAATCTGGGCGGGAAGCTGGGGACGTCCATCACCGAGACCCTACGGGTGGAAAACATCGGAGATCTCACTCAGTTCAGCAAGATCCAGCTGGAGCAGCACTTCGGGGAGAAGACCGGGTCGTGGCTGTATGACTTGTGCCGAGGGGTCGAGTTTGAGCCCGTGAAGCCTCGACAGCTCCCCAAATCCATCGGCTGCAGCAAGAACTTTCAAGGAAAAACCTGCCTGGCTACAAAACAACAGGTGCAGCACTGGCTTCATCAGCTGGCCCTCGAGTTACAGGAACGACTgaacaaagacagagagatgAACGGGCGGGTGGCCAGACAGCTGACGGTGGGCGTCAGGCAGGCCGGGGATCAGAGTTTTTCTCGCTGCTGTGCTCTCGTTCGATACGACGCCGTGAAGATGACCTCGGACAGCCTGGCCATCATCAAGAGCCTGAACGCCGCAGGAAGTCACCAGGAGGCGTGGTCTCCAGCTTTGACCTGTCTTCAACTGTCAGCCAGTAAGTTCAGCGACGTTCCCTCAACCTCGTCCGGAGGAATAGCCAGCTTTCTGTCCAGTGACGCTCCTTCGACGCAATCGCGTCTAGCCTCGACACAAACCCCCAAAACACAGCCGAGCCCCAAGCGCCCGGGGGCCATCCAGTCTCTGTTTGAGAAGGCGGCTGAGAAGAAGAAAGCGCCTGGGTCATCCGGTCTCCCTCAGAGAGCTCCTGGCATCTCCTCCTTCTTCCACAGAAAAGGTGAGGAGAAGTCGCTCCAGCTGACGGAGTCGCTCCAGCAGACGGAGTCGCTCCAGCAGACGGAGTCGCTCCAGCTGACGGAGTCGCTCGGAGCGGACGAGGGCGATCTTCAGCCGTGTCAGCGCTGTGGACTGAAGGTGCTGGTCTGGGAAATGCCTGAGCACATGGACTATCACTTCGCTCTGGACCTGCAGGAGTCGTTCTCCTCGGCGTCCAGCGGGAAGAGCCAGGCCCCGCCCCTGACCCCGAGTGGCCCGCAGGCCAAGAGAGCGCGAGTGCAGGCAAACCGCCGCACGCTGGACTCCTTCTTCAGAAAGACGTGAGCGCAGCCCCGGCCAGCTCTTCACAGCATTTGTGCCTTTTCGAAAACTTTtacggttttatttttatataataaatacgtTGCTCGAGGGAATGCCGTTCAAaagcagttttcttttcttgtatAGAGGCCTTGATCTACTGAACGCATGAAAGTAACACAAAAACAGTCACGTGGGCTAggtttttttgaaattgagaagCGGTCCGTTGATGCATAGTTTATTAGGATATGACTATATTTGGAAACCGAGCGtgcaaaaaaattgaaatattgagaaaatcgttttgaaagttgtccaaatgaagatCTTCAACACTAATTCAAAATTAGGTTTGAATGTATTGGTAAAAATTTACAATAAAGTTgtcgtttgttaacattagtcatgttagttcataaaaatactatCATTCGTTGTTAGGTCATGTTAGTTCAGTGCATTAACTAGTTACCAAACAACTTGTGATTGACCACAATTAACAAAAGCTGTAGAAGTCCAGTTCATTCTTAGCTCACGTTAACTCATGTCAAGtgatgttaactaatgaaccttattgtaaagttttatcAAATGTACGtgtggtaggaaatgtacaaaataactTTGTGGAACGTATTCTTTACTCGGTCATCTGAAATGTCGTTGTCTGCCTGCTCCACATCGGATATCGTAGAAATTAGCAAGAGTACAGTGCCCTGTAATCGTGATATTCTGTCAGAATTTGTTACATCCCATTAAAACAGTAGTTcggcaatgaaaaaaaaaaagaaactgttatATGCTGTTGTGGTTAGAACAGCTAGGAACAAGCATTGAACACACTTTTCTACCTGTTACAGTAATTGTTTAATGCTGGAAAAAGAATGCAATTCTAATATTGCGATAAAATCAGAGGGGCGTAATAAAACttgttttgcaaa

Function

GO: NA

KEGG:

id description
K03509 POLH; DNA polymerase eta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133578 lncRNA upstream 427 2481369 ~ 2481775 (+) True G90232
TU133576 lncRNA upstream 558 2481369 ~ 2481644 (+) False G90232
TU133558 lncRNA upstream 44693 2437106 ~ 2437509 (+) True G90220
TU133549 lncRNA upstream 159238 2322609 ~ 2322964 (+) True G90214
XR_006252325.1 lncRNA upstream 171067 2309881 ~ 2311135 (+) True LOC122356488
TU133666 lncRNA downstream 136803 2624938 ~ 2625283 (+) True G90290
TU133668 lncRNA downstream 141057 2629192 ~ 2629607 (+) True G90292
TU133713 lncRNA downstream 369190 2857325 ~ 2954253 (+) False G90319
TU133714 lncRNA downstream 369190 2857325 ~ 3204019 (+) True G90319
XR_006252297.1 lncRNA downstream 377672 2865807 ~ 2881686 (+) True LOC122356240
XM_043256327.1 mRNA upstream 3353 2477593 ~ 2478849 (+) True tmem14a
XM_043255191.1 mRNA upstream 31789 2446050 ~ 2450413 (+) False LOC122356456
XM_043255192.1 mRNA upstream 31789 2446062 ~ 2450413 (+) False LOC122356456
XM_043255190.1 mRNA upstream 31789 2446102 ~ 2450413 (+) True LOC122356456
XM_043255195.1 mRNA upstream 49519 2428760 ~ 2432683 (+) True LOC122356459
XM_043254713.1 mRNA downstream 12547 2500682 ~ 2502321 (+) True LOC122356205
XM_043255905.1 mRNA downstream 351715 2839850 ~ 2846260 (+) True ppm1g
XM_043254766.1 mRNA downstream 364428 2852563 ~ 2860667 (+) True LOC122356236
XM_043256388.1 mRNA downstream 428757 2916892 ~ 2951762 (+) True LOC122357122
XM_043255830.1 mRNA downstream 469523 2957658 ~ 2971147 (+) True LOC122356776
TU133574 other upstream 11821 2469945 ~ 2470381 (+) True G90230
TU133396 other upstream 301463 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 316174 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 609611 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 640094 1840335 ~ 1842108 (+) False mpc1
TU133786 other downstream 494424 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 494608 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 563847 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 565439 3053574 ~ 3055118 (+) False LOC122356070
TU133814 other downstream 686600 3174735 ~ 3285406 (+) True G90350

Expression Profile