RNA id: XR_006252348.1


Basic Information

Item Value
RNA id XR_006252348.1
length 3102
RNA type transcript
GC content 0.54
exon number 10
gene id LOC122356531
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15774777 ~ 15793540 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTGTTTGCATCTTACAGTATCGCTGCCCTGCAACGCGTCATGACGTCACTGcggtgtcatttttatttacacgaGACTCCAGCTGTTACATTGACTCGGCAAACAGAgtcgatgtgtgtgtgtgtgtgtgtgtgtccgtgggTGTGTGTCATCGCCACGTGATCCAGCTCGCCAATGTCCTTCTACAACCCACTCAGCATCATGGCTGCGGATGCTGCGGATGCTCTCCTCCCGCACCGCATCCCCGGACCATGCCTCCTGCCCCTGCTGCTCCTGATCGCCTCCGCTCTCCCCACACCGAGCCACGGGCTGCTGGGCTTCCGACCGGAGGACACGGGAGGAGATCTGTCCGTGCAGGACGGGCTGCTGAAGGCCACCGAAGGGACGCGGTTCATGTTACGCGTGTACTATGCAGCATCCCCGCAGAGGCTCAACCGGACCGTCAGCGCAGCCGCGCCGTGGATCGCTTTCATAGAAGAACCGGAGCCGGGCAGAGAGGGGCAGGTGCATCCCAAACGCAACTTGTGCGTGGAGGAGAGCGCGAGGAGCTCGGACATAGAGCTGCTCGGTTCTTTCAAGTCAGCCTCCAGCCAGAACTCCATCCTGGTGGAGCTTCTCGCCAAAGACCTGCGGAGAGGAGAGAACATCAAGTATTACTCCATGTGCGCCTTTGACGGGATCAAATGGGAGCACTACCGGACGCGAGACTTCTGGCTGGCGGTGGTGGAGCGACCGCCGCACACGGACGGTTGGTTGCAGGCGGGTCTGTCGGTGCTGCTCCTGGCGCTTTCCGCGCTCTTCAGCGGGCTGGTGATCAGCATGCTCGCGCTGGACCCCGTGGAGCTCAAAGTGCTGCAGAACAGCGGCACGGACAAGGAGCAAAAATACGCGCACAAGATCGAGTCAGTGCGCAAACACGGCAACTACGTTCTGTGCACCCTGGTGCTGTGCAACGTGCTCACCAACACTTTTTTGGTGGTCTGGATGTGCCAGATCCTCGGAGTGACGCCCGTCTCTACTGCGGCGTGCACTTTTCTCATCTTCTTCATCGGAGAGATCCTGCCGCACTCCGTAGCGTCCAGGCACGGGCTGGCCATCGCGTCCAAGACCGTGTGGCTGACCAAGATGCTGATGCTGCTGACTTTTCCGATCACATACCCCATCAGCAAACTCCTAGACAACATGCTGCACCAGGAAATCAGCAACTTCTACACCCGCGAGAAGTTACTGGCTATGCTGAGAGTTACAGACCCTTATCATGACCTGGTGAAAGAAGAGCTGAACATCATCCAGGGAGCTCTGGAACTCAGGAGCAAAACTGTGGAAGACGTGCTGACCCCTCTCAATGACTGCTTCATGCTGGCCTCGGATGCCGTGCTGGACTTCTACACTATGTCAGACGTGATGCAGAGCGGATACACTCGCATTCCCGTGTTTGAGAACGAACGGTCTAATATCGTCGATATACTGTTCGTCAAAGATCTGGCCTTTGTTGATCCAGATGACTGCACACCGTTAAAGACCATCACTCAGTTCTACAAGCACCCGCTGCACTGTGTCTTTAACGACACCAAGCTGGACGCAATGCTGGAGCAATTCAAGAAAGGGAAATCTCATTTGGCTATCGTGCAGAGGGTCAATAACGAGGGAGAAGGAGATCCCTTCTACGAAGTCATGGGCATCGTCACTCTAGAAGACGTCATCGAGGAAATCATCAAGTCTGAGATCGTGGACGAAACGGACCTCTACACTGATAACCGTACGAAGAGAAGAGTGTCTCACCATGAGAGGAAACAGCAAGATTTCTCCATATTTAAACTGTCCGAGAGTGAAATGAAGGTCAAAGTTTCACCACAGCTTCTGCTCGCAACGCACCGCTTTCTAGCAACAGAAGTAGAGCCTTTTAAGTCGACGCACCTCTCGGAGAAGATCCTCCTGCGGTTGATAAAGCACCCGAGCGTGGTGCAGGAACTCAAGTTTGATGAAAAAAGCAAGCGGTCACCAAAACACTACCTCTTCCAACGCAACAAGCCGGTGGATTATTTCGTCCTCATTTTGCAGGGTCGAGTGGAGGTAGAGATCGGTAAGGAGGGACTAAAGTTTGAAAACGGGCCGTTTACATACTACGGCTTGCCTGCCATCATGACCATCCTACCCACAGTCCACAGATCCCCGTCCCGGAGCAGCGGTCTCAATCATTCAGATACTACAATCCACGGAGGCAGTCTGGGTCAACTGAGCATCAGCGGAGGACCGTATTTACCAGACTATTCGGTTCGCCAGCTCACAGACCTACAGATCATTAAGATCACTCGTAACCATTATCAGAACGCCCTGACAGCTACGCGCATGGACAGCTCACCGCAAACACCCGACGCAGAGAGTCAAGCGCCCGGGGAGAGGATGACGATCCCTGAGACGCGCTCCAACAGCATCGCCCTTCCCCTGACAGAACCACGGCCCTGTCTGACCCGATTCCACCAGCACAGCCACCTCTACAGACAGCCAGACAGCACCACCACCCTCAACGAGAGGAACCGCATCGTCCGAAGTAAGTCAGATGGACAGAAGAGCCCCAGTGACTCTGTGTTCCTGCGTATGGATGATACCCCATATATAAGAGACAATCGCATGGAGAGAAAAGAAGGAACCGCGAGCGAGACGTGTGACAGACTGCAGGGAGAGGAAATGCATGAGCTCCAGTCTCTGTTTATACGACCCGCGAAAGGAATGCTGACATCAGGCTAGAACTGTCCGTTTCAGCTCTGCTTGTTATGACTAGAGGTTAACGGGAATGACTGCTCCGAGAATCAAGACGTTTGGATGTatagagaagagaagagaagagaagagaagagaagagaagagaagagaagaaactaACCAATGACTTTCCAGCTCAGTTTGTCATGTGATCGTGGCCCGTTATCATAGTGTGTCCGATCTATTTCAGATGCAACGGCCGTAGCCATGGAGACGGACCTGTCCACATCCCAGCTCATCGGATCTCACTCTCTGGGCGGCTCGGATGAGAACCTGGGGAAAAAACTGCTCCGGAAACTCAgcaacaaaaaaagaaagaagtctCGTGATGGAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139382 lncRNA downstream 13734 15763424 ~ 15763745 (-) True G94200
TU139381 lncRNA downstream 14636 15762551 ~ 15762843 (-) True G94199
TU139369 lncRNA downstream 56663 15686413 ~ 15720816 (-) False zgc:123010
TU139297 lncRNA downstream 136846 15640275 ~ 15640633 (-) True G94145
TU139282 lncRNA downstream 171766 15604687 ~ 15605713 (-) True G94132
TU139407 lncRNA upstream 83989 15877527 ~ 15885222 (-) False G94216
TU139429 lncRNA upstream 113732 15907270 ~ 15907491 (-) True G94232
TU139455 lncRNA upstream 173476 15967014 ~ 15967343 (-) True G94247
TU139518 lncRNA upstream 536604 16330142 ~ 16332347 (-) True G94298
TU139539 lncRNA upstream 583035 16376573 ~ 16376923 (-) True G94308
XM_043254609.1 mRNA downstream 22351 15752636 ~ 15755128 (-) False nkx2.3
XM_043254746.1 mRNA downstream 29019 15743917 ~ 15748460 (-) True nkx3.3
XM_043256153.1 mRNA downstream 67331 15701427 ~ 15710148 (-) True pyroxd2
XM_043254602.1 mRNA downstream 76995 15686270 ~ 15700484 (-) True zgc:123010
XM_043254690.1 mRNA downstream 96085 15654465 ~ 15681394 (-) True loxl4
XM_043255688.1 mRNA upstream 78537 15872075 ~ 15876837 (-) False st3gal7
XM_043255687.1 mRNA upstream 78537 15872075 ~ 15876821 (-) True st3gal7
XM_043254666.1 mRNA upstream 96435 15889973 ~ 15893677 (-) True morn4
XM_043254592.1 mRNA upstream 216149 16009687 ~ 16169204 (-) False pcdh15a
XM_043254587.1 mRNA upstream 216149 16009687 ~ 16169204 (-) False pcdh15a
TU139376 other downstream 22419 15752647 ~ 15755060 (-) True nkx2.3
TU139299 other downstream 134976 15642031 ~ 15642503 (-) True G94147
TU139278 other downstream 193562 15564617 ~ 15583917 (-) True G94128
TU139178 other downstream 524198 15250575 ~ 15253281 (-) False col9a1b
TU139176 other downstream 534682 15240750 ~ 15242797 (-) False col9a1b
TU139406 other upstream 83989 15877527 ~ 15885222 (-) True G94216
XR_006252284.1 other upstream 218264 16011802 ~ 16162753 (-) False pcdh15a
XR_006252287.1 other upstream 220779 16014317 ~ 16162753 (-) False pcdh15a
XR_006252286.1 other upstream 220779 16014317 ~ 16162753 (-) False pcdh15a
XR_006252285.1 other upstream 220779 16014317 ~ 16162753 (-) False pcdh15a

Expression Profile