RNA id: XM_043255337.1


Basic Information

Item Value
RNA id XM_043255337.1
length 2752
RNA type mRNA
GC content 0.38
exon number 9
gene id tspan14
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 7783638 ~ 7790864 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTCTCACACTCACACGCCAAGTCttgaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtggaTGGGTGGTGTGTTGGAGTTTTTCAAACTGTAAGTACTAGGCGGAGGCATTGTGTGACATAAACAAAGAGAAGAAAATGCACTATTACAGATATGAAAACGCAGAGGTCAGCTGTTGCTACAAATACCTCATGTTCAGttacaacattattttttgGCTGGCTGGAACAGCATTCATTGCAATTGGCTTCTGGGCCTGGAGTGAAAAGGGTGTTTTATCGGATCTGACACAAGTTACACGTCTACATGGTTTTGACCCAGTTTGGGGGGTGCTTGTTGTGGGCACAGTCACTTTCATTTTGGGATTTGCTGGGTGTGTTGGAGCTCTCAGGGAAAACATCTGCCTCCTTAAGTTTTTCTCTGGAGTCATCGGCTTCATCTTCTTCCTGGAGTTGACGGCTGCTGTGTTGGCGTTTGTGTTCCAGGGCCAAGTTAGGGAATGGATCAATGATTTCTTTTTGGCCAATGTAAAGGCTTACAGGGAAGACATTGACCTGCAGAATCTGATTGACTCTCTCCAGAAACTGAATCATTGCTGTGGAGCTAAAGACCCCAACGACTGGAatctaaatgtgtattttaactGCTCAACTGATAACCCCAGCAGAGAGAGATGTGGAGTGCCCTTTTCCTGCTGCATCAGCGACCCTGCTGATACAGTGGTGAACACGCAGTGCGGATATGATATTAGAATGTCTGCCACACCGTCTCACTGGAGCAACACCATTTATGTCAAAGGATGCATGATGGCTTTAGAGGAGTGGCTTCCACGCAATCTGTACATTGTGGCTGGAGTCTTCATAGTCATATCGTTGCTACAGATGGTGGGAATCTTCTTGGCAAGGACACTGATTGGAGACATTGAAAAAGTAAAGTTTAATTATTACTGAGCTCTGATGTAACTGAAAGGGAGCTAAGGGCAATGGAAAAAGACGTGGatctacatttaattttctacGTCTCTTTTTGTGGAGAAGAGGACTCTACACCATTCACTGGACCACCTTTTCAGCAATTCTATAGACTACATATTGAATACGCGGCTGCCTAAGCTCAGTTGGATACTGTCACATGTGTGCCTTGTCTCTTCTTCAAGTTTACCTCCAGTCCACTCcctatttttattcaaatatttgttttttttaataggacaACCATTAaccaaacatttgtatttttgcgACCACTATTAACCAAGCGGAGTATACTTAAGTGGCAACACGATGGGACCATAACCTGTAAACTAACCTGAAGTGTAATTTGTTATAAGTGGTCAACCAAGCTTTGATTACTGAAATGTAATGTATCTTACATGGTCCTGTTACATACACTCCAAAATCTTATGCGTACTTATTTGTTGTTATTGGGAACTGAATTAAGAATTGGTACAAAAGCACAAACTGGAACAAATTTAGGATGTTTTTTTAGaagcatgtttatttttccttgaagatgaaaaaaaacgtGTCCTCTCACAGTAAAAAGTCTTATGAAAGAGAACAGTTTCACGCAGTTTTAACTGCAGTAAACGCATATCTTTTAATGTTTGTTGAGTTTTGTTGAATTTATTACTTAAGTCTTTCCGCGGACAGAAGGTCTGCATTTAATGTCAACCGCAAAGAGTGCAGAAGAAAATGATCAGGATCTGACCGGAAGTACTCGCATGTAAACGGAACACATCGGGAATACAGCTGCTTAGAAATCAAATGCCAGTGAGCCGATCCATTAGATCCTAAATGATAGAGGTAAGATACATCAGTATGTATCCTTTATATTACAGTAAGCAACTCATATGTGCTGTTATTTGTTCATTctgtttgatcatttttaacagaATGTCTCACATTTGTAAATGGTCACTTTCTGTTGGACCTCTGCTTAACTTTTAAGATTCACTGGAAATTCACGTAGTCACCATATGGCTTATACTGATGTCAACATTGCCTTGAGATGCCAACGTTTACCTCCTTTTTTTCTACTCTTACTTCTTGACTTTTTTAcgaaaatgcagatttttgtgCCTTTTCTCTGGCATTATAAggtttcataaaatgtattgtataccGTGTTAAAGCTGAATAGAATCATATCCATGATTAACCTTTTTTTACGGGTGCTTAAAGAATATTTACTTGTGTTTTCAATTAACAATTTAACTGCCAGCACGGCACAAACTACTTAAAATACATaccattaataatattaatgtcttCACACTTGAAttagccaaaaaaaacccaatatgCATTCTGACATAAATGCAAACACCTGCCCGTCTTCACTCTTTCTACAGCCCAAAGACTTATCATTTTGAAGTTCTATCTTAGTATACTTATATGACATGACCTCTGAAATCTCAtcaatgcaaaaagaaaattatttaacaagaaaaagaaagcatttagtTGATCTTTTTAATTCAGAGTGCACTATTTTATCCCTTTTTGGAGTGTCTGTCTGTGCCACTGTGTAGTGTTAAAGCTTAATAGAGTATTTACTAAAATGCAGTACAGTTTCCCTGACTTTGCTGCAAGAGCCTCCTTTTTTCATGAagggatgttttttttgtgttggaTCTAGATGTTATTTGTTGTTGGATAATTGTtgtctttgtaaatattttctgaattcttttcagcatttttatattcaataaaaaaaaaagtttgacatTATCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252306.1 lncRNA downstream 738063 7017223 ~ 7045575 (-) True LOC122356287
TU135614 lncRNA downstream 903744 6879222 ~ 6879894 (-) True G91574
TU135536 lncRNA downstream 996031 6787267 ~ 6787607 (-) True G91513
XR_006252424.1 lncRNA downstream 1079715 6693662 ~ 6703923 (-) True LOC122357105
TU135512 lncRNA downstream 1096343 6687077 ~ 6687295 (-) True G91490
TU135810 lncRNA upstream 18996 7809860 ~ 7810104 (-) False si:dkey-191g9.7
TU135853 lncRNA upstream 187956 7978820 ~ 7980706 (-) True G91758
TU135856 lncRNA upstream 193082 7983946 ~ 7984316 (-) True G91760
TU135882 lncRNA upstream 206816 7997680 ~ 8041218 (-) True G91769
TU135912 lncRNA upstream 340379 8131243 ~ 8131848 (-) True G91796
XM_043256417.1 mRNA downstream 408476 7372444 ~ 7375162 (-) True si:ch1073-126c3.2
XM_043256418.1 mRNA downstream 408512 7372444 ~ 7375126 (-) False si:ch1073-126c3.2
XM_043256320.1 mRNA downstream 421628 7301181 ~ 7362010 (-) False gfra1a
XM_043256318.1 mRNA downstream 421629 7301181 ~ 7362009 (-) True gfra1a
XM_043256319.1 mRNA downstream 421635 7301181 ~ 7362003 (-) False gfra1a
XM_043254663.1 mRNA upstream 2972 7793836 ~ 7795601 (-) True mxtx1
XM_043256016.1 mRNA upstream 7646 7798510 ~ 7802178 (-) True elovl6l
XM_043256017.1 mRNA upstream 15712 7806576 ~ 7809315 (-) True sprn
XM_043256391.1 mRNA upstream 18985 7809849 ~ 7816379 (-) False si:dkey-191g9.7
XM_043256390.1 mRNA upstream 18985 7809849 ~ 7816379 (-) True si:dkey-191g9.7
unassigned_transcript_1927 other downstream 648496 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 652423 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 1392923 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 1557905 6225261 ~ 6225733 (-) False LOC122356805
XR_006252265.1 other downstream 3094470 4672966 ~ 4689168 (-) False LOC122356061
TU135889 other upstream 252701 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 1324229 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 2394897 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 3134080 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 3410082 11200946 ~ 11218985 (-) False rassf4a

Expression Profile