RNA id: XM_043255347.1


Basic Information

Item Value
RNA id XM_043255347.1
length 2045
RNA type mRNA
GC content 0.40
exon number 3
gene id ubtd1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11520086 ~ 11525260 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttaccATGCACTCCCTTGTGGCCCCTTGTGGGTACCTGGAcctcattttgaaaatgcctttCTTACATCTCAAAAATCgtcaaaaagcactttttgaaaatgagcagttatggtaaatttaattttatttcttttgtaagGGCAGATCTTACACTTTGGAACTCACAGGTCCCTGCAGGAACCCATGTTTTTGATTTCTTAAGCAAAccaacataaaagaaaatatcctTGAATGACTTGATGGCACAACGCGAAAAAGATTAACatgttgtataatatataaacttctTGTCTGTTCTTCCTTTACTGAGAAATCCATTAAGATTGGGACATTTTAGATTAGATGTATTTGTCTCAGTTCTTGGATGCACCTGCTCGAGACAATCCTGggatttacagtttatttttgacTATCCTTCCTGGTCTAAAATAGAGTTGACTGGATTAGGTTTGTTGTAAAAAGTCACTCATGCATCTAAGCCCAAGCCAGGGATTGTAAAAGCAAAGTCTATTTTTTGGTGCTGGAAGATATCTTGGCGATTTGCTTTGGTTTATATTTGTTCAGTTGTTATTTTTAGATTCAGAAATCGGGTGATGGGCGTGTACTATTTTGCAAGAAACTACTAGCGGAGCGTCATGGGTTTTGCTGTGACTCGTAGCGCCACGCATGTGGAGTTGATTGTCTCAACCCTTGCATGAAGTCCTAGGAGTGACTGTCCAGTAACTTTTCACTGGTTAGAGGAATAAGTGACTGCTCAGACCATGGGAGTTGCAAACTCAAGAGACTATCAACCAACGATAACAGTTGTGCTGAAAAGACGCAATGAGCCCCTGAAGAAAGATAAGCCCAAGTGGAAAAGTGAATATCCTATGACAGAAGGCCAGCTGCGCAGTAAAAGAGACGAATTCTGGGACACAGCCCCAGCTTTTGATGGCCGTAAAGAGATCTGGGATGCACTGAAAGCCGCAGCTGTAGCGACTGAATGTAACGACCATGAACTGGCGCAGGCTATTGTAGATGGAGCCAGCATCACACTGCCTCAtgGGTCTCTTATGGAGTGCTATGATGAACTGGGGAACCGCTATCAGCTCCCTGCATACTGCTTGGCTCCTCCAGTCAACCTGGTATCCGAGTGCAACGATCGTAATGTGTCTGAAAACTCTGAGCTACaggagaagaaggagaaggagtTCCAGTTGAAGGTACGTCTCTCCACCGGAAAAGACCTCCGCCTCAGCGTCACAATGGCCGACTCCATACGTCAActaaaaaaacagcttcaaaTTCAGGAAGACATTGACACCACCCACCAGCGATGGTTTTTCTCTGGGAAGCTTCTCACGGATAAAACACGTTTACAAGACACCAAGATCCAGAAGGACTTTGTAATACAGGTCATTGTTAGTCAGCCCATTGTCCCCaactaaacacacaaaacattgaACTGGGACTCAGTGAACTCAAATCTACCGTTCCTACTGTATAAAATCACTCAtcaggttttaattttaacacatGTCCTTTAAATTTTTCTAACTGAATTGTCCATGTTCTTAATTCATGAGGAGCTGAAAAGAAACATTAATATAGCTATACATGAATTGGAGAGTATATTCAAAAGATTTATCAAAATCAGCTAAGTTTCTGTTTACTGTACTCTTAACACtccataattaaattaaaccttGCCTTCTTGGTTTTAATATCCCTACATATGTTGTGTGGATATATTCAATTCCATATTCTATGTGGTATCATTTGCCTTCATCCTTGATTCGTCTGGTGTCCAATATTGAGCAGAACTCAGAGCGTTTGGATTATTAAAAGGTTGTCAGGACATTAATCATTGACTGTTATGAGACTTACATATCTGTGTTATCTGTAAATGCAACAACAGCCCGTGTTCATATTCTGAAGTTCAAgtatattcatttgtttgtagatacgcttttataatttattgcaGGACTAAGAGGTcaattatttctaataaaaatgtattttaaatgttgaaactAGATCTAAACtgtataattgtaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137563 lncRNA downstream 106833 11412183 ~ 11413253 (-) True G92935
TU137562 lncRNA downstream 108647 11410630 ~ 11411439 (-) True G92934
TU137428 lncRNA downstream 257449 11257080 ~ 11262637 (-) False G92842
TU137429 lncRNA downstream 257449 11257080 ~ 11262637 (-) True G92842
TU137439 lncRNA downstream 370834 11146178 ~ 11149252 (-) True G92848
TU137736 lncRNA upstream 100878 11624798 ~ 11625140 (-) True G93062
TU137737 lncRNA upstream 105520 11629440 ~ 11629749 (-) True G93063
TU137742 lncRNA upstream 121469 11645389 ~ 11648035 (-) False six1a
TU137783 lncRNA upstream 214097 11738017 ~ 11738231 (-) True G93099
TU137799 lncRNA upstream 278095 11802015 ~ 11802286 (-) True G93111
XM_043255617.1 mRNA downstream 751 11509238 ~ 11519335 (-) True rrp12
XM_043254723.1 mRNA downstream 33852 11482519 ~ 11486234 (-) True prdm8
XM_043255536.1 mRNA downstream 94908 11416347 ~ 11425178 (-) False mapk8a
XM_043255534.1 mRNA downstream 94909 11414223 ~ 11425177 (-) True mapk8a
XM_043255340.1 mRNA upstream 1483 11525403 ~ 11532457 (-) False zdhhc16a
XM_043255341.1 mRNA upstream 1483 11525403 ~ 11531306 (-) False zdhhc16a
XM_043255339.1 mRNA upstream 1483 11525403 ~ 11531306 (-) True zdhhc16a
XM_043255344.1 mRNA upstream 9530 11533450 ~ 11540103 (-) True pgam1a
XM_043254961.1 mRNA upstream 33439 11557359 ~ 11577350 (-) False rtn1a
XR_006252282.1 other downstream 301101 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 584755 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 1329576 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 2404535 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 3472185 8043565 ~ 8047901 (-) True G91775
XR_006252349.1 other upstream 2260 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 247508 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 905277 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 1033157 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 2040502 13564422 ~ 13567925 (-) False srd5a2b

Expression Profile