RNA id: XM_043255402.1


Basic Information

Item Value
RNA id XM_043255402.1
length 4881
RNA type mRNA
GC content 0.49
exon number 25
gene id zmp:0000000755
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22254179 ~ 22283646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTGTATATGAGGGACCTTTAGACAGcttaacagaaaatataattacacataATATTCCTTTTAACTTTTATTCGCTCCAGTGAATCACATTGACTCAGAGATTCATTTGCTCCAGTGAATCAATTTCTCTCAGAGATTCGTTCGCTCCGGTGAGTCGGACAGTATCTCAGAGATTCATTCGCTCTGGTGAATCAGTTCCTCTCAGAGATTCGTTCGCTCCGGTGAATCAGTTCCTCTCAGAGATTCGTTCGCTCCGGTGAATCAGTTCCTCTCAGAGATTCGTTCGCTCCGGTGAGTCGGACAGTCTCTCAGAGAGTCGTGGCGCCGCAGCAGCTCTGAACTCTTGGTCGCTGGATGCGAGCGGCGCGGAGCGGAGGCTGAAGCGATGATGGCGGCGGCGCTGGAGAGAGGAGGGCTGCGGGCCGGCGGCGGCGGAGCGGCTCTCACTGCGGCGGGCGGCTCGGTGCTCTGGAGCTCCGCGGGGTCCGGATCCGCGCCCGTCCCCATGAACCTCTTCGCCACCTGGGAGATAGACCGCTCCTCTCCGAGCTGCGTGCCCCggctGTGCAGTCTGACTCTGAAGAGGCTGATCGTGCTGAAGGAGCTGGATAAGGAGTTGAGCTCGGTGCTCATTGCTGTGAAGATTCAGGGCTCCAAACGAgtgttgcgatcaaACGAGTATGCTCTTCCTCCCAGCGGTCTGATGGAGACGGAGCTGGAGCTCACCTTCTCTCTGCAGGTGCTGCAGCATCCCACGGACGGCGGACAGATTCTGGGTCTCCATAGCAACATGAAGGAAGCGCCAACATGCGTAGCTGAGattagcgttttctcactgtcCAGTCAACCCATCGACCATGAGTACAGCAGCGGCCAGACCGGAGCCAAGAACAAAGCCtcggATCGGTCTCCTGATAATTACTCAGAGGATGATGATGACAGTTATTCTTCAGGACAGGAGGGCAGTGATGATGCTGGACACACACAAGATCTGTACGATGAAGACGACGACATACGAAAGCCAAAAAAACCCAGACGGAAAATGATCCGCTCGATCTCAATGACACGACAACCCAACTTCAAGCAGAAGTTTGTGGCCTTGTTGAAGAGATTTAAAGTCACAGACGAGGTTCTGGACTCAGACCCGGTGGATCAGACgcaggaggtggaggaggaccTGGATCTGCTGTATGACAGTCTGGAGGTGTATAATCAGAGCGACAGCGGGCCGGAGATGGAGGACAACGAGAGCGTCCTGAGCACCCCGAAACCCAAACTCAAgccgTTTTTTGAGGGCATGTCTCACTCCAGTTCTCAAACAGAGATCGGCAGCATCCACAGTCATAATCTCCAACGAGACGCAACACCCAACatgGCTGCTGACTTCCTGTCTGTGGAACGCTGCAAGACGACTGGCTCACAGCAGCAGGAGGACAGCAGTATGGAGACCAGCGGAGggGAGGCTGAAGCAGAGCATCATGGGATGGTGACGGCAGACGCGTCGGAGCCCAGCAGCTCCGGTGGGAAGCTCTGTAAGACGGAGTCCCAGAACCTCAGCAGTCCCAGTAAAGCGGAGAGCAGGGTCCAGCGGCGCGCTCGCAGCACCTCCATGAAGGAGCGGCAGAACTCCCGAGTCCAGAGCGAGCGCACCATCAGCGTGGACAGTGAGTGTTCTCCAGAGAACCGCTTCAGCGCTCAGGTGCCCCGGAAATCAGTGTATGATCAGCTGAATCAGATCCTGATATCAGACGAAAGACTCCCTGAGAACATCATCCTCATCAACACAGTGGACTGGCagggccagTATGTGGAGGAGGTTCTTCAGAAACATGCTCAGCCCATTGTGTCTACCTGCTCCGCCGCTGACGTCCAGGCCGCATTCAACACCATCGTCACACGCATTCAGAGATTCTGTAACTGTAACGCTCAGACTCCGCCCACGGTGAAGGTGGCAGTGGCCGGTGATCAGAGCTATCTCAGTACAGTGTTGCGCCTCTTCGTAGAGCAGCTGGCCAATAAGACGCCTGATTGGCTGAGCTACATCCGCTTCCTCATCGTCCCCATCGGTTCCCATCCTCTGGCCAAGTATGTGTCGACGTTCGACAGTAGGTTCTGCAGTATGTTCATGGATCCGTCCTGGAGGGAGCTGTTCTGCCGCTCAGATTCTCCCAGCGCAGACACTGTTGATGTAGCTGGACGGATCATCCAGTATCTGGCTGGAGCCAATGTGTCTCATCAGTTTCCCATCTCTGAAGCCATGCTCACCTACAGACAGAAGAGGAGGAGAAGTCTGTATTTTGATTTTTACATCAGTCCGGATGAAGATTCTTGCCAAAAGTTTGTGCCATTCATCGGGGTGGTGAAGGTGGGCATCGTTGAACACAGTCTGTCCACTTCAGtgGATTCTGATGATGCCATGGGTGGGAATATGGGCGTGGTTTCAACACCCATGCCACAGCTGGCCACGCCCTATGGGAAGGAGATGTACGTGACTCCGCCCCCTTCACCCTCGGCGTGTGCGGTTTTCACAGGAGTGGGgtctcCGTGCACCGGCGGGGAGCTGATGGGGCTGCAGGTGGACTACTGGACGTGTGTGAGCGGAGAGAAGAAGCGTGAGGGTGAGAAGCGTGAGTCCGGTCTGAAGAACACACTGAAGAGTAACTTCCGCTCGCTGCAGGTCAGTCGTCTGCCGGCCGCCGGAGAACCCAGCGCTCCTCACAGCATGGCCATGACCGTCGTCACCAAAGAGAAGAACAAGAAAGTGATTTTTCTAAGTAAGAAGCTGAAGGAGAAGGAAGTGGACGCTAAGAGTCAGGTGATCGACGGAATCAGCCGCCTCATCTGTACAGCTAAACACCAACACACCATGCTGAGAGtgtcCATCGACGGCGTGGAGTGGAACGACGTCAAGTTCTTCCAGCTGGCCGCTCAGTGGCCGACTCACGTCAAGCACTTCCCGGTCGGTGTGTTCGGATACAACAAACCCGTGTGACATCACCTGCTTCCCTGGTCCTCACACGCTAGTCCTGTGCTCAGTATCCTGAAAACGATTCTCTAGTACCTCCTGAGATCATCTGGGTGTGCTGTTAGTCGACTAGTGCTTCAGATAAACCCCTACTAGTCAACCAGAGAGATGTTTAGTGAAGGGTAGTCCTGCCTGTAGTGCACTTGATAGTGTGTGAGAGACGAGTGTTGAAAGCACATCCGGTGTCTCAGAAGAGCTCTGaggaatcatttttagtatatatgcacaaaaacaGAGCACTTTGGGTCTATAATGgaggtgtatttattttttctccccTGAGGAGTTTCCCATGGAAACCTGAGCGCCTCTGCTTGGTTTATATCGGCGCGTGTTTTCGTTTTTTACGCTATATAAAGAGAACAGCTCATATTTTCTAAGAACACGGCTGCCGACGGTCAGATATATTTTTAGGTAGCGATGAACCGAACGGCAAACGCAGAGcactttctgttgtttttgctaCTTTATAATTTCTGTGAAATCCTGTGTAGATTACGGTCAGGTGCATGATGGGAAAGAGGCGTTTTTGCTGTGAatttaatggatttttatttaacctAAATGTAGAGTTTGTGGTGTTTTGTGAATCTGATGTAAACTGAACCTGCCTTTCAAAGCACACACCGCAGGAGAAGAGACTTCCTGTCACATGACACGCTCACGCATCATCACGTCAAGAACTCAACTTTATCTGGAAAAGCCATATTCAGTCCCTCTCAGGCTTTCTGCAGGTCAGGGTTTAGACTAAAGGTCTTTGGACGCCGTGTTTTTTCTATCAAAGTGCTTGAAAAACGAAATCGAAGCTGATCCGAAGCAAACCAGATCCAAACAACAGGAAGTCCAATTTATTTATGAGCAAAAATCTGAATCTCAGACTCCGTGCAAGGACCTCAAGTCAAGAAAATGTGaagactatttattttttttttatataaactgtCAGAAAACAAGACGCTGCATCTTCAGTAAATGAGGGCCATGACTTCCTGCCTGAAGAACGAAGACCCGTAGAAACCCTGAAGGTGAGGAGCATCGGTGCTCGTGCTCGAACCCGAACCCTTCAGAAAGAGTTTTTCTTCCGTCGTGGAGCTGAAGGGacgagtgtgtgttgtgtttaaaGGTGCTTTCGTGTTTTTATTCGTGATCGTTTTAATGGCGTCGCATATTTAGAGCTGAATGTATTGAGATGGAGTCCGTTCTCAGTGTTTCTACCCACAAGATGACCACGTTATAAACACTTCATCCCAGGTTtagttttaaagcacttttagtcCTGAACGAAGCACTTTGATTTAAAGACCCTCATGTTCTTCTTAAGAAGATAGTTTGTGTAATGTTCCAGTGTTCTTCAGAATATCTCCCCTTTATGTTCACAGATGAAACACAGTCAGATGAGATCTATATAAACACAATCTTTCTATTAACGTCTGGTTTGTTCTGATCGGACGCCGTCTGTCTGAGACACAGCTAAAAACTACAGATCTGGaatcattttccaaatcaagttataattatttttgatggTAGGAAAAGTACTAAAAATGAGTATTTAATATCCTGATGATTTTTGTCATGACAGAGactgtttctgtttgtgtgaaGCTCATCTGTTAGTGTTTCATCCCTGCTTGGGTTTCGTGTGTTATTTCTTAAAGGTGTATTGAAGAAGTCACATCCAGTGCTGGGAAATTTACTTTTAACTGTAACGCATTACAATACTGCATTACTTCCTAAAAAAAGGAACTCATTATAGGTTATGTTAGTTATCTTTTACGGAAACTAATGTGTTacgttactttttaaatctgtcttgattgtttgtttttaataaaacaagttcttctttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141834 lncRNA downstream 9702 22174326 ~ 22244477 (-) True G95934
TU141833 lncRNA downstream 23640 22228184 ~ 22230539 (-) True G95933
XR_006252426.1 lncRNA downstream 111407 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 117788 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 133737 22114696 ~ 22120442 (-) True G95902
TU141836 lncRNA upstream 12695 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 19659 22303305 ~ 22303781 (-) True G95941
TU141840 lncRNA upstream 23422 22307068 ~ 22370625 (-) True G95938
TU141853 lncRNA upstream 30010 22313656 ~ 22483219 (-) True G95949
TU141854 lncRNA upstream 30010 22313656 ~ 22315134 (-) False G95949
XM_043255446.1 mRNA downstream 3866 22231449 ~ 22250313 (-) False klc1b
XM_043255444.1 mRNA downstream 3866 22231449 ~ 22250313 (-) False klc1b
XM_043255445.1 mRNA downstream 3866 22231449 ~ 22250313 (-) False klc1b
XM_043255443.1 mRNA downstream 3866 22231449 ~ 22250313 (-) False klc1b
XM_043255450.1 mRNA downstream 3866 22233792 ~ 22250313 (-) False klc1b
XM_043254650.1 mRNA upstream 33594 22317240 ~ 22323509 (-) True slc30a10
XM_043254651.1 mRNA upstream 43059 22326705 ~ 22329292 (-) True ypel5
XM_043254793.1 mRNA upstream 151602 22435248 ~ 22448011 (-) False LOC122356262
XM_043254794.1 mRNA upstream 201643 22485289 ~ 22489323 (-) True LOC122356263
XM_043254796.1 mRNA upstream 519072 22802718 ~ 22819457 (-) True LOC122356266
XR_006252351.1 other downstream 3866 22232814 ~ 22250313 (-) False klc1b
TU141832 other downstream 15609 22236104 ~ 22238570 (-) True G95932
TU141795 other downstream 97320 22151742 ~ 22156859 (-) True tmem254
TU141794 other downstream 97355 22151742 ~ 22156824 (-) False tmem254
TU141816 other downstream 110209 22138329 ~ 22143970 (-) False LOC122357128
TU141837 other upstream 12695 22296341 ~ 22297227 (-) True G95936
TU141850 other upstream 43064 22326710 ~ 22329260 (-) False ypel5
TU141887 other upstream 87921 22371567 ~ 22438998 (-) True LOC122356262
TU141882 other upstream 95446 22379092 ~ 22443286 (-) False LOC122356262
TU141894 other upstream 137290 22420936 ~ 22422869 (-) True G95972

Expression Profile