RNA id: XM_043255410.1


Basic Information

Item Value
RNA id XM_043255410.1
length 1283
RNA type mRNA
GC content 0.45
exon number 6
gene id sncga
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8215939 ~ 8222627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCTCCAGTATGGATGCGCTGAAGAAAGGATTCTCCATGGCTAAGGAGGGAGTGGTGGCTGCTGCCGAGAAGACCAAGGCCGgggtggaggaggcagctgcCAAAACCAAAGAGGGGGTCATGTATGTAGGCACAAAGACAAAGGAAGGTGTTGTGACGAGTGTAAACACAGTGGCCCAGAAAACGACTGAGCAGGCCAATCTCGTGAGCGACAGCGCTGTGGCTGGAGCAAATCAGATGTCAGAAAAGACGGTGGAGGGGCTGGAGAGTGTGGTTGCATCCACTGGCCTGGTCAAACCGGATGACCTGGAGAACACTGAGGGGGAGATATCGAAGCAGGAGGGAGCTGTGGAGCAGCCTACAGACGCCGGACAGTAGCTTTTTGTCGCGCTGAACATCCCTGTGACGCTCTGCTTCTCGCTTAAGAAGAGAGACTTCATTTTCTGCTAAGGGCCGTGGCTGAATATTATCATACTAAACCTCTGATGGACGCTAAATAATATccaacttcacacacacacacacacacacacacacacaaaaaaacaaaggcacCCAAATCTCTCTCTTGCTTTGTCCTCACAAACAACCTCTACTCACCTCACTTTACCACTTTTCCTCACATAAACCTATCCtattcacaagaaaaaaaagctcatgTAACCACACAGTATTATTTAGCTATGCAATATTCACATATACTGTGCAGTGCGTTATCAGATTTATGCAAACATTACATGCATGTGCTTGTGATCCGGACCTTTTTATAAAGGCAATGTCTAAAACCAGTTTTCCTCCTCCCAAAGGCTGTGAGGTCTAGATGATTTCTCACACAGTCAGTGAGAGAGCGGTTTTAAAACATTCTAGCCCAAACACACAGTCAGTGTAGTATCTGAGACAGTTTTCGAAACAGAATCACAGATAGGTAAATCCTAAGGAAAGAGGGCATCTGAAGTCTGTAAAGCATGAAGGTGGCTGGGTAAATCGGTTTCGGTATTACCCTAAATTGTGGTTATAGAGTGATAGGGTTTTTAGTAAGGCTCTTATATGTGGTTTTCTATAGCAGCCATTATAAACAACCCACAAAACCTGCGAATGACGTCAGAGCAGTTGCTAGGACACATGAGTTGTTTGTGGAAGCTATGTATGCTGCCTCACGACTACACTTTAACTGATCCTATTCACGCACTTGACTCCCGCATTGTTCCCCGCAAagtctaaaaacagctttttatttttaaatataccatctgtaataaattcagttttgtgaaaaacaaa

Function

GO: NA

KEGG:

id description
K24202 SNCG; gamma-synuclein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135927 lncRNA upstream 21621 8192326 ~ 8194318 (+) True G91809
XR_006252393.1 lncRNA upstream 104661 8108341 ~ 8111278 (+) True LOC122356873
TU135763 lncRNA upstream 390598 7823282 ~ 7825341 (+) True G91681
TU135745 lncRNA upstream 405835 7809871 ~ 7810104 (+) True G91673
TU135739 lncRNA upstream 428632 7783640 ~ 7787307 (+) False sh2d4ba
TU135952 lncRNA downstream 46684 8269311 ~ 8269581 (+) True G91825
TU135953 lncRNA downstream 48535 8271162 ~ 8271394 (+) True G91826
TU135955 lncRNA downstream 58944 8281571 ~ 8282001 (+) True G91828
TU135956 lncRNA downstream 59528 8282155 ~ 8282587 (+) True G91829
TU135958 lncRNA downstream 78990 8301617 ~ 8370121 (+) True G91831
XM_043255407.1 mRNA upstream 24847 8171771 ~ 8191092 (+) True bmpr1aa
XM_043255408.1 mRNA upstream 24847 8171771 ~ 8191092 (+) False bmpr1aa
XM_043255409.1 mRNA upstream 24847 8171803 ~ 8191092 (+) False bmpr1aa
XM_043255882.1 mRNA upstream 44688 8136584 ~ 8171251 (+) True ldb3a
XM_043254708.1 mRNA upstream 84056 8111653 ~ 8131883 (+) True opn4a
XM_043254621.1 mRNA downstream 1143 8223770 ~ 8225251 (+) True zgc:193505
XM_043254623.1 mRNA downstream 15787 8238414 ~ 8256098 (+) True nfkb2
XM_043255654.1 mRNA downstream 68544 8291171 ~ 8300745 (+) True dna2
XM_043255659.1 mRNA downstream 96871 8319498 ~ 8324207 (+) True hnrnph3
XM_043255660.1 mRNA downstream 96871 8319498 ~ 8324207 (+) False hnrnph3
XR_006252298.1 other upstream 334456 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 376998 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1084443 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 3218043 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134242 other upstream 3971898 4241132 ~ 4244041 (+) True G90660
TU135961 other downstream 83859 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 443641 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 516446 8739073 ~ 8740089 (+) False sf3b5
TU136388 other downstream 938934 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 2013289 10235916 ~ 10249725 (+) False LOC122356813

Expression Profile