RNA id: XM_043255413.1


Basic Information

Item Value
RNA id XM_043255413.1
length 5784
RNA type mRNA
GC content 0.46
exon number 2
gene id zbtb18
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6254597 ~ 6263995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGATGTGTTTTGAATGGGGAGCTCTCGTTAAGTCTTTTTTGCGTGTCTGCTGTCGGCCGCCAGAGTGTGCGAAATGGGAAGTAAAGGATTTCGGGGCTGGTGTAGTGTAACCAGGCTGGGGGACGAGTGACACTTTTTTTGGTTTCCAGGCGAGCGTTTGAttattctgtttgtttgcaGGTCCTCAGTTGGGTTACTTCGTTCTCAATGGCAAATTGTTGCTGTGTTGTGACAGTGCGGGGTGGCGTTGGTAGGGAGTTCATTGTAGTGTTACCGCTTTAAAACCGGAAACTCTTACACGTTTAGATATACATATGTGCGTGCTGTTAAAACCGGTTTTTGCTTTGAGCGGCGAGATGTTCGGTCCATTTAAACCAAATTCCTAATCTTCTGAAGCGAGGGGAAAACGCAGAAATAAATCTGCAACTTTATATAATCAGACGTTCTTCCGAACGTCCCTTCGTCAGGCTTTTTGCTcaactctttcctttttttcttgtttgtaagGACTAATTTAGAACTTGCAGATTTGAGCTGCCTGAATTGGCTAGACAGCTGTAATCGCACTCCTCCTAGTCTTAATCTCTTTATCTGGGCAGCAGCTGCCATATGGTCTCAGTCAGCTGGATCAGATGTTCATAAGCCTCCTTCTCCGTCCCTCTCTGTCCTCCCAGTCTCCTAATTTGATCGCTGCTACCTTGTGAGCTGTCCTGCaatctttatttttagccaTCTTAAGGATTAGGATTGATGTGGACTACGGGGCACTTAAAGTGATTGTATTGTAAATCTGCTGTGGACCGCCTCTTTGGGGAGGATGTTCCATTTCTCCAAAGATTTGGGGAGGGGAAAAGGGGGAGGAGAGGGCTGGCGAGAGGTTTGTTATCCCCCTGTCCCCCTATAAGCCCCTCATTAATGAAGGTCTGAACGCTGTttggggtggggtggggggcTTTGGCTTGCCATCCCAATCAGATTTAAATGAAGATTCAAATGAGTTCATTTAAGTCCGCTGCTTGAACATGACGCCGGTGCATTTTTTTAGACGGGAACGGTCCCCGTGGGTAACAGGTTATGAAGACAGCATGGAGTTTCCAGACCACAGCAGACATTTGCTACAGTGTCTGAGCGAGCAGAGGCATCAGGGATTCCTTTGTGACTCCACTGTGCTGGTCGGTGATGCCCAGTTCCGAGCCCATCGTGCAGTGCTGGCTTCATGCAGCATGTACTTCCACCTCTTTTACAAGGACCAGCTAGACAAAAGGGACATTGTTCATCTGAACAGCGACATTGTCACGGCCCCGGCCTTTGCTCTCCTGCTTGAGTTCATGTACGAAGGAAAGCTCCAGTTCAAATCGCTTCCAGTGGAGGATGTGCTGGCTGCCGCCAGCTACCTCCACATGTACGACATTGTCAAGGTGTGCAAGAAGAAGCTCAAGCAGAAGGCCACGGCCGAGGCCGACAGCACCAAGCGCGAGGAGGACGCTTCCAGCTGCTCGGACAAGGTGGAGAGCTTCTCGGAAGGTGGGAGCACGGGCCGGCCGGCCACCGCCGACCTGCTACAGAGCGATGACGAGGACATGGAGAACAAGCGGGATAGCCCTCAGGAGCCGGGGAGCATGTGGATGCGTCTGCCCTCCGATCGGACCGCGTCTCCCACCACCAGCCCCAGGGAGGCGGAGACGCATGGCCCCGATGCTGGCAAATCTCCCGCCGGCAGCCCCAGCAGCTCCACCGGCTCCCTGTCCCGTCGCTCAGCCGTGTCTCGAAGAGTCTCCGCCGACACCGATTGCGTGCTTGACCTCTCCGTCAAGTCCGGTCTGGGCGGAGGTCCTGGGGAGACCATGGCCAGCAACCCGTACTTCTGCAGCTCTGTGACCCCAGACAGCCTCCAGAGCGCCCTGGTCCAGGTCAAGGTGGAAAAGGACACGGGCTCGGACGATGACGAGCTGGTGAGTGGCGACTACGAGATGGAGCACAGCGGCGTCAAGGAGCCGCCCAGCACCAACGGGACTCACATCAGCCTCGTTGCACAACGGCGCTTGGGCCTGGAGGCTCACCTCTCGGCCCTACGCGAGGCCTCGCTGGCCAGCGAGCTGGAGCGGGACGACAAAGGAGGCGACGACGACGCAGACGTCTTAGGAGGGGACAGCGAGCGAGCGCAGGAGGCCGCTGGGGTCGAGACCTCCCTGTTGCCTTACGTCTCCAGCATGCTGGGGGCTCCACATACTCAGATCTTCATGTGCCCCTTATGCAACAAGGTCTTCCCCAGCCCACACATCCTGCAAATCCACCTCAGCACGCATTTCCGTGAGCAGGAAGGCGTACGGGCCAAGCCGGCCGGCGACGTCAATGTCCCCACCTGCTCCATCTGCGGCAAAACCTTCTCCTGCATGTACACGTTAAAGCGCCACGAGCGGACGCACTCGGGCGAGAAGCCCTACACATGCACTACTTGCGGCAAGAGCTTCCAGTACTCGCACAACCTGAGCCGACACGCCGTCGTGCACACGCGCGAGAAGCCGCACGCCTGTAAGTGGTGCGAGCGGCGCTTCACGCAGTCAGGGGACTTGTACCGACACATCCGCAAGTTCCACTGCGAACTGGTCAACTCGCTTTCGGTCAAGAGCGAGGCTCTCAATCTACCCACGGTCAGAGACTGGGCACTGGAAGATAGTTCTCAAGAACTGTGGAAATGAAAGCTGAACTAATAGCAGACTGTTTGAACTGCTTGTTAAATTAATGAGAGAGATCTGAGTGGCATTTTTTGTTGGGGCAGAGAGGTGAAGGTAAGAGTGGGGCGGAGTGACGGCCGAAGGGTCCGAATCAGTCATTTTTCTTGTATGTACATTGCAAATCTTGTTGAATTGCACTTTACTAGCACATGAAAATGTTACTACTGATttccttttaatatattttctggtCTCTTTAgggtctcttttctttttcttttttttcctgctctcCTTGGGTTTTTATAAAACATGGGTGCTGGTCTCAGTAACCAActctgacagaaaaaaacaaatcattggGATTTTCAACTGtatataatttacagtatttgtatACGCTCCTAAATTTCAAGGAACACCTGCCATGAAAAGCATATGAAGATTTCAGGTAATACACAGAGGAGTTTAAAACTAAGGACACACTAAACGGGTACTATGATCATATTTTTACCTGTACACACTCACCTCTTGTtcgagtatgtgtgtgtgtattaaaatataaatatagtgcaCTACTATAATTTGCAGATAACATACCTGATGTGTGACTGTGGCCGTGCGTGCATGTGTATTCATGcgcatacgcacacatacacacgtagTGTGTGAGCAGGTCAGTCCTTTAAATCCCACGAGGAAGCTCTAAGCTTGCGTTACTTAAGCTCTTGTACATTTTTGACTCGTTATAGGAAACTTGACTGATGGAAGACAAACAAGGCACTCATGCAATGTacagcctctttttttttttcatatcagttgccgcattttttttttctatcatttcCTAATATGATTTGAAGTTATTTTCGCATTTTAGTTGCGGTCTCTGCATCACTCGTTTGCTACTGAGGTTGGTTTTTACATCAGCTGCATTTCTAGCGATTTCTGTAGTGTTTTATTAAGATTTTTCGTTTTTAAAACGGAATCTGTTGTTGCATGATGTCTGACCTGTATATTGAAAAAGATGTGACTTGCTGTATTGCTGTACACTGTAATTGACTGATTCATTACAGTCAGGGCACCTGtctgttgagaaaaaaaaagtacctttaATATTACCGCTGTAGAAATtgcatgaattttatttaacttactCTTTTTCGTTGTTGTTTTGCATCAGagagtgtattttttaattaactaatttgATTCCTTGGTAGATTTGAGTTTTTTCCTCTTACTAGAGAACGAACCGAGGGGTTCTggtgaggtgttttttttatttttagtttttttttttctgggctGTGAAGATTGTGGAAATGCACTGACGTTAGGCTGCAGTATCTACACGCGCGACGCGATTGGGTTCGGGCTCGCTGTAGGATTCGGGGGGTTAACGAGGGGCCAGGTGTCAGCAGAGGCTGGATCGCTACATTTATTGTTCAGAAGGCTAGCGCGGCTCCTGCTAGCATCTCCTCGCGCTGCTCTTCCCAGTGCTGGGTCCTCAACTGCTGTTTGTCTCAGTGTCCTGTTTACTGGCCGTTGTCATTTGAATCATGTCGGCTCTGTtcgtaatttatttatttatcttttcaaTTGGCACTTGCTTCAGATTCGATTGCCATGAAGACACATTTGCGTGGCTGATGGTACAGCTCTTCTTTATGGGTGTCCTCAGCAGCGCTCATCTATTTGGAGAAGCTGAAGGATCTTTAAACAGCATAAAGCTCAACACACTCTGATCTgagtggtttgtgtgtgtgtgtgtgtgtgtttgtgttcaatacataagtcgttttttttttcgttttgttttggtCACTAGAACGTGTTTGGCAAGGTTGGTTGCACCTTTGAAGCTTAATGAAATTAGAATGATGTGCAAAAGAGGCCTTTGATATGTATATGCTTAATTATTAACTTTAATCCAATTGACTttgttacactgaaaaaaaaaaaaaaaaaaagatctataaATTTGTGATTGTTCACTTTTTGCAGCATTTgtgatttctaaaaatgtttcttttgaaagtgttttatttcttcttttaatttgcaagggtttgttttattaacaacGTGAGaattctgttcattttgtttgtttgtttgtttgtttcacacaaaaaaataacaatttcattGTCAAAtccagagaaataaaaaaaaacaaaaaacaaagaaaatgaaaaacatatggCTTAGCGCTGTAGACGTAGACCGGTCACTCACATAGTGCTGAAATGCTTGAACTACTTTAGTTAGTGAGGGCCGGGGGCTCCGCACATGTTTGGAGCAGGACAGGAGTGTGCGGCACGCGGGCCTACGCAGGCCTCAGGAGCTGTCCTACCATATATTTGGCTGGTGCAACGGCTAGTGAAAAGGTTGAGCTTTGCCAACAGCGCACGCTCCTCACGGCGTTTTGCACGGTGGTACTTTTACCTTTTGCACTCTAAAATGTGacggaaaaaaaatatcaactgCGGGGTTGATTTGTTTTctatgctttctttttctttatgtttttttgttggctTCTATTGTACTTGACCGCCTTAAACTACTGTTATCAGCTTATTACTCAGAGGGTGAAAACTGGAAACTGTCGCTGGAATACTGGATGTCTGtctctgactttttttttttttttttttttcgttgttgttCAATGGAAATGAAGCTGTGAAATGGCCTATGAAGCATATCCATAAATTAGATACCCCTTTAGTTTACTTGAAACCCAGGAACCCCAGTGTGAAGAACAACTCTGTCAAATTCAAACTCTGTGGCTAATGAGTAtgggaaagaaaataataaatatctgtTGAATTCAAGGACAATCGCTGTCTGgatggaagaagaaaaaaaaaaaagaagaagattcAACTTCACATGTAATTGCTTCCCTTCTGAGATTTTTTGCTATGTTGACATTGTTCTTTTTATGGATTTAGACATTTAGCTTTGACAATCATAGTATGTTTCATTTTCTCAAGGGAAGTAAATTATGAGGCTGTTTAGTTTTGTACTTTTGGTGTGCTGTTggtgaaatttttaaaattgtgtgcAAACTGCAATAAATTATAAGAACCTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K23196 ZBTB18_42; zinc finger and BTB domain-containing protein 18/42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135395 lncRNA downstream 46634 6206094 ~ 6207963 (-) True G91406
TU135382 lncRNA downstream 70600 6183634 ~ 6183997 (-) True G91395
TU135331 lncRNA downstream 153414 6099268 ~ 6101183 (-) True G91364
TU135351 lncRNA downstream 181408 6061688 ~ 6073189 (-) False gng2
TU135350 lncRNA downstream 181691 6061688 ~ 6072906 (-) False gng2
TU135418 lncRNA upstream 29598 6290881 ~ 6292203 (-) True G91420
TU135466 lncRNA upstream 185215 6446498 ~ 6448426 (-) True G91454
TU135473 lncRNA upstream 235652 6496935 ~ 6497935 (-) False lrpprc
TU135474 lncRNA upstream 236658 6497941 ~ 6499556 (-) False lrpprc
TU135475 lncRNA upstream 275318 6536601 ~ 6538368 (-) True G91459
XM_043255873.1 mRNA downstream 27325 6220175 ~ 6227272 (-) True LOC122356805
XM_043255489.1 mRNA downstream 34841 6212541 ~ 6219756 (-) True desi2
XM_043255685.1 mRNA downstream 108567 6134613 ~ 6146030 (-) False sufu
XM_043256078.1 mRNA upstream 97039 6358322 ~ 6396426 (-) False sdccag8
XM_043256079.1 mRNA upstream 97229 6358512 ~ 6396426 (-) False sdccag8
XM_043256077.1 mRNA upstream 97229 6358512 ~ 6396426 (-) True sdccag8
XM_043256080.1 mRNA upstream 98847 6360130 ~ 6396426 (-) False sdccag8
XM_043255440.1 mRNA upstream 168099 6429382 ~ 6433028 (-) True dync2li1
TU135397 other downstream 28864 6225261 ~ 6225733 (-) False LOC122356805
XR_006252269.1 other downstream 1565429 4672966 ~ 4689168 (-) False LOC122356061
TU135441 other upstream 96918 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 869862 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 873789 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 1782282 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 2853810 9115093 ~ 9115551 (-) True G92267

Expression Profile