RNA id: XM_043255415.1


Basic Information

Item Value
RNA id XM_043255415.1
length 5616
RNA type mRNA
GC content 0.46
exon number 2
gene id zbtb18
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6254597 ~ 6263995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatacattttttagtacAGACCAATGTATTCTATTAACTTCAATAGTGCATTAATGTCGTTTGAAAATTGAAGCGCTATTAATAATCGATTAATGATCTCCCAATTAAAAGCCACTAACTTGGTAACATGACGAGGATGATAATTGTGACGACGATAATGATAACGAAGAATAATTATAACAACATAACTAAATTACAATTACccaagtattttttatttttttatcatcctCTTATATCCGTATGTAGTACGCCTAATGTTTGTAAATCGCAAGCCCTCCGCGGACGTAACGCTTCACGCGAGTTTTATTTTGTAGCAGTAATTGTAGAGTTGCATCAGACGCTCGCGCCTCCGTCCGTCGCTCGGAGCAGGTTTCCGCGGCGGTGTCGTTGTCCCCGTGCCCCTGCCTCTCCGCAGCGCTGGAGGAAGTTGCAGTGCACCTGTTCTTCGCCGCTGCTCGGCCCATGACTACAGTACCCACGTAACATTGCGCAATGTCCCTCGATCCGCGCGCTGCGCCAGTCTGCTCGAGGAAcccgctcgctcgctcgctcggcctttttttttctgctttctcaCTGTTGCCTGGTGTCAACCTACGCCGAGAAAGAGACATCCCTCCCTCTTCCCCCCTCAGCGGCAGCTTCCAATTTGCCTTCGCTTTTCTTTTCGCCTCTTCCATTGGCTTGCGCGCTGCCAGTCAAGCGCTTCCTCTTTACAGGAGAGTTGAGTAGCAACAGCTCGGAAACATCTGGCTGCCGCAGCTCTCGTCGCTCCGCTCGCCTGCTCCGTCTTTCCTGCCACCGCAGGTTGTTATGGAAAGCTGTTGAAAGTCGATCGAGTTGTTTTTCTCGCTGAGAGGATTAGACGGAGGAAGCAGGAAGACGCTGGACCTGGTCGCCTGTTATGAAGACAGCATGGAGTTTCCAGACCACAGCAGACATTTGCTACAGTGTCTGAGCGAGCAGAGGCATCAGGGATTCCTTTGTGACTCCACTGTGCTGGTCGGTGATGCCCAGTTCCGAGCCCATCGTGCAGTGCTGGCTTCATGCAGCATGTACTTCCACCTCTTTTACAAGGACCAGCTAGACAAAAGGGACATTGTTCATCTGAACAGCGACATTGTCACGGCCCCGGCCTTTGCTCTCCTGCTTGAGTTCATGTACGAAGGAAAGCTCCAGTTCAAATCGCTTCCAGTGGAGGATGTGCTGGCTGCCGCCAGCTACCTCCACATGTACGACATTGTCAAGGTGTGCAAGAAGAAGCTCAAGCAGAAGGCCACGGCCGAGGCCGACAGCACCAAGCGCGAGGAGGACGCTTCCAGCTGCTCGGACAAGGTGGAGAGCTTCTCGGAAGGTGGGAGCACGGGCCGGCCGGCCACCGCCGACCTGCTACAGAGCGATGACGAGGACATGGAGAACAAGCGGGATAGCCCTCAGGAGCCGGGGAGCATGTGGATGCGTCTGCCCTCCGATCGGACCGCGTCTCCCACCACCAGCCCCAGGGAGGCGGAGACGCATGGCCCCGATGCTGGCAAATCTCCCGCCGGCAGCCCCAGCAGCTCCACCGGCTCCCTGTCCCGTCGCTCAGCCGTGTCTCGAAGAGTCTCCGCCGACACCGATTGCGTGCTTGACCTCTCCGTCAAGTCCGGTCTGGGCGGAGGTCCTGGGGAGACCATGGCCAGCAACCCGTACTTCTGCAGCTCTGTGACCCCAGACAGCCTCCAGAGCGCCCTGGTCCAGGTCAAGGTGGAAAAGGACACGGGCTCGGACGATGACGAGCTGGTGAGTGGCGACTACGAGATGGAGCACAGCGGCGTCAAGGAGCCGCCCAGCACCAACGGGACTCACATCAGCCTCGTTGCACAACGGCGCTTGGGCCTGGAGGCTCACCTCTCGGCCCTACGCGAGGCCTCGCTGGCCAGCGAGCTGGAGCGGGACGACAAAGGAGGCGACGACGACGCAGACGTCTTAGGAGGGGACAGCGAGCGAGCGCAGGAGGCCGCTGGGGTCGAGACCTCCCTGTTGCCTTACGTCTCCAGCATGCTGGGGGCTCCACATACTCAGATCTTCATGTGCCCCTTATGCAACAAGGTCTTCCCCAGCCCACACATCCTGCAAATCCACCTCAGCACGCATTTCCGTGAGCAGGAAGGCGTACGGGCCAAGCCGGCCGGCGACGTCAATGTCCCCACCTGCTCCATCTGCGGCAAAACCTTCTCCTGCATGTACACGTTAAAGCGCCACGAGCGGACGCACTCGGGCGAGAAGCCCTACACATGCACTACTTGCGGCAAGAGCTTCCAGTACTCGCACAACCTGAGCCGACACGCCGTCGTGCACACGCGCGAGAAGCCGCACGCCTGTAAGTGGTGCGAGCGGCGCTTCACGCAGTCAGGGGACTTGTACCGACACATCCGCAAGTTCCACTGCGAACTGGTCAACTCGCTTTCGGTCAAGAGCGAGGCTCTCAATCTACCCACGGTCAGAGACTGGGCACTGGAAGATAGTTCTCAAGAACTGTGGAAATGAAAGCTGAACTAATAGCAGACTGTTTGAACTGCTTGTTAAATTAATGAGAGAGATCTGAGTGGCATTTTTTGTTGGGGCAGAGAGGTGAAGGTAAGAGTGGGGCGGAGTGACGGCCGAAGGGTCCGAATCAGTCATTTTTCTTGTATGTACATTGCAAATCTTGTTGAATTGCACTTTACTAGCACATGAAAATGTTACTACTGATttccttttaatatattttctggtCTCTTTAgggtctcttttctttttcttttttttcctgctctcCTTGGGTTTTTATAAAACATGGGTGCTGGTCTCAGTAACCAActctgacagaaaaaaacaaatcattggGATTTTCAACTGtatataatttacagtatttgtatACGCTCCTAAATTTCAAGGAACACCTGCCATGAAAAGCATATGAAGATTTCAGGTAATACACAGAGGAGTTTAAAACTAAGGACACACTAAACGGGTACTATGATCATATTTTTACCTGTACACACTCACCTCTTGTtcgagtatgtgtgtgtgtattaaaatataaatatagtgcaCTACTATAATTTGCAGATAACATACCTGATGTGTGACTGTGGCCGTGCGTGCATGTGTATTCATGcgcatacgcacacatacacacgtagTGTGTGAGCAGGTCAGTCCTTTAAATCCCACGAGGAAGCTCTAAGCTTGCGTTACTTAAGCTCTTGTACATTTTTGACTCGTTATAGGAAACTTGACTGATGGAAGACAAACAAGGCACTCATGCAATGTacagcctctttttttttttcatatcagttgccgcattttttttttctatcatttcCTAATATGATTTGAAGTTATTTTCGCATTTTAGTTGCGGTCTCTGCATCACTCGTTTGCTACTGAGGTTGGTTTTTACATCAGCTGCATTTCTAGCGATTTCTGTAGTGTTTTATTAAGATTTTTCGTTTTTAAAACGGAATCTGTTGTTGCATGATGTCTGACCTGTATATTGAAAAAGATGTGACTTGCTGTATTGCTGTACACTGTAATTGACTGATTCATTACAGTCAGGGCACCTGtctgttgagaaaaaaaaagtacctttaATATTACCGCTGTAGAAATtgcatgaattttatttaacttactCTTTTTCGTTGTTGTTTTGCATCAGagagtgtattttttaattaactaatttgATTCCTTGGTAGATTTGAGTTTTTTCCTCTTACTAGAGAACGAACCGAGGGGTTCTggtgaggtgttttttttatttttagtttttttttttctgggctGTGAAGATTGTGGAAATGCACTGACGTTAGGCTGCAGTATCTACACGCGCGACGCGATTGGGTTCGGGCTCGCTGTAGGATTCGGGGGGTTAACGAGGGGCCAGGTGTCAGCAGAGGCTGGATCGCTACATTTATTGTTCAGAAGGCTAGCGCGGCTCCTGCTAGCATCTCCTCGCGCTGCTCTTCCCAGTGCTGGGTCCTCAACTGCTGTTTGTCTCAGTGTCCTGTTTACTGGCCGTTGTCATTTGAATCATGTCGGCTCTGTtcgtaatttatttatttatcttttcaaTTGGCACTTGCTTCAGATTCGATTGCCATGAAGACACATTTGCGTGGCTGATGGTACAGCTCTTCTTTATGGGTGTCCTCAGCAGCGCTCATCTATTTGGAGAAGCTGAAGGATCTTTAAACAGCATAAAGCTCAACACACTCTGATCTgagtggtttgtgtgtgtgtgtgtgtgtgtttgtgttcaatacataagtcgttttttttttcgttttgttttggtCACTAGAACGTGTTTGGCAAGGTTGGTTGCACCTTTGAAGCTTAATGAAATTAGAATGATGTGCAAAAGAGGCCTTTGATATGTATATGCTTAATTATTAACTTTAATCCAATTGACTttgttacactgaaaaaaaaaaaaaaaaaaagatctataaATTTGTGATTGTTCACTTTTTGCAGCATTTgtgatttctaaaaatgtttcttttgaaagtgttttatttcttcttttaatttgcaagggtttgttttattaacaacGTGAGaattctgttcattttgtttgtttgtttgtttgtttcacacaaaaaaataacaatttcattGTCAAAtccagagaaataaaaaaaaacaaaaaacaaagaaaatgaaaaacatatggCTTAGCGCTGTAGACGTAGACCGGTCACTCACATAGTGCTGAAATGCTTGAACTACTTTAGTTAGTGAGGGCCGGGGGCTCCGCACATGTTTGGAGCAGGACAGGAGTGTGCGGCACGCGGGCCTACGCAGGCCTCAGGAGCTGTCCTACCATATATTTGGCTGGTGCAACGGCTAGTGAAAAGGTTGAGCTTTGCCAACAGCGCACGCTCCTCACGGCGTTTTGCACGGTGGTACTTTTACCTTTTGCACTCTAAAATGTGacggaaaaaaaatatcaactgCGGGGTTGATTTGTTTTctatgctttctttttctttatgtttttttgttggctTCTATTGTACTTGACCGCCTTAAACTACTGTTATCAGCTTATTACTCAGAGGGTGAAAACTGGAAACTGTCGCTGGAATACTGGATGTCTGtctctgactttttttttttttttttttttcgttgttgttCAATGGAAATGAAGCTGTGAAATGGCCTATGAAGCATATCCATAAATTAGATACCCCTTTAGTTTACTTGAAACCCAGGAACCCCAGTGTGAAGAACAACTCTGTCAAATTCAAACTCTGTGGCTAATGAGTAtgggaaagaaaataataaatatctgtTGAATTCAAGGACAATCGCTGTCTGgatggaagaagaaaaaaaaaaaagaagaagattcAACTTCACATGTAATTGCTTCCCTTCTGAGATTTTTTGCTATGTTGACATTGTTCTTTTTATGGATTTAGACATTTAGCTTTGACAATCATAGTATGTTTCATTTTCTCAAGGGAAGTAAATTATGAGGCTGTTTAGTTTTGTACTTTTGGTGTGCTGTTggtgaaatttttaaaattgtgtgcAAACTGCAATAAATTATAAGAACCTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135395 lncRNA downstream 46634 6206094 ~ 6207963 (-) True G91406
TU135382 lncRNA downstream 70600 6183634 ~ 6183997 (-) True G91395
TU135331 lncRNA downstream 153414 6099268 ~ 6101183 (-) True G91364
TU135351 lncRNA downstream 181408 6061688 ~ 6073189 (-) False gng2
TU135350 lncRNA downstream 181691 6061688 ~ 6072906 (-) False gng2
TU135418 lncRNA upstream 26886 6290881 ~ 6292203 (-) True G91420
TU135466 lncRNA upstream 182503 6446498 ~ 6448426 (-) True G91454
TU135473 lncRNA upstream 232940 6496935 ~ 6497935 (-) False lrpprc
TU135474 lncRNA upstream 233946 6497941 ~ 6499556 (-) False lrpprc
TU135475 lncRNA upstream 272606 6536601 ~ 6538368 (-) True G91459
XM_043255873.1 mRNA downstream 27325 6220175 ~ 6227272 (-) True LOC122356805
XM_043255489.1 mRNA downstream 34841 6212541 ~ 6219756 (-) True desi2
XM_043255682.1 mRNA downstream 108566 6134613 ~ 6146031 (-) True sufu
XM_043256078.1 mRNA upstream 94327 6358322 ~ 6396426 (-) False sdccag8
XM_043256079.1 mRNA upstream 94517 6358512 ~ 6396426 (-) False sdccag8
XM_043256077.1 mRNA upstream 94517 6358512 ~ 6396426 (-) True sdccag8
XM_043256080.1 mRNA upstream 96135 6360130 ~ 6396426 (-) False sdccag8
XM_043255440.1 mRNA upstream 165387 6429382 ~ 6433028 (-) True dync2li1
TU135397 other downstream 28864 6225261 ~ 6225733 (-) False LOC122356805
XR_006252267.1 other downstream 1565429 4672966 ~ 4689168 (-) False LOC122356061
TU135441 other upstream 94206 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 867150 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 871077 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 1779570 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 2851098 9115093 ~ 9115551 (-) True G92267

Expression Profile