RNA id: XM_043255439.1


Basic Information

Item Value
RNA id XM_043255439.1
length 6065
RNA type mRNA
GC content 0.53
exon number 19
gene id cep170aa
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6396742 ~ 6429387 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACGCTGTCCTACTTGCCTGATTCCAGGCTGCCGTATGTCGCCGCTATTTGTTAGGAATAACGATATTGCTGCTGAGCAACTGAGGCAAATAGGAGACGTGGGGATACACACTGGGCTGGGCTACGAAAACCGTTTAGCTGCTGCATTGAAGCCAAAGATAAAACTGACAGCGAAAAGAAGAGCAAGGGATGACGTAGGGACTGAGGCTGGAGGAGAGTGCAGAGATGAGCCTCACGTCCTGGTTCCTCGTGAGTAGCGGGGGCACGCGGCACCGCCTGCCCCGGGAGATGATATTTGTGGGCCGTGATGACTGCGAGCTTATGCTACAGTCTCGCAGTGTAGACAAGCAGCACGCTGTCATCAACTATGAGTCCAGCAGCGACGAGCACAAGGTGAAGGATCTGGGAAGCCTGAACGGGacatTTGTGAATGATGTCAGAATCCAGGAACAGATGTACATCACTTTAAAGATCGATGACAAACTGCGTTTTGGATATGATACCAACTTGTTCACTGTGGTGCGAGGAGAGCTACATGTACCAGAGGAGGCTCTGAAGCATGAAAAGTTCACCAGCCAACTTCAGCTGGGCAAGAAGCCCACCTGTGCAGAGCCTTCAAAAACCCCCAAGTCTTCCCCAGACAAAGCCAAAGTGAGCAAACCATCGCAGCCCATTGCTGAACCAGCAGCCAAACCTGCAGAGCCAAACAAAGGAGATGACAAGATGGCAGGTGATATAGCTGCCATGCACAGGGGAACCCCGCTGTATGGACAGCCGTCCTGGTGGGGCGACGGGGATGCAGATGATGAGAACTCCTTTAAACAAGAGAATAAAACATCTGGAAAGAAGCAGGAGAACAGTGGGGCCGAGAGCAAAGAGACCAAGAGAGGTGATAAATCAAAGGAAAATGGTTTGGGGCCTCTAGGCGCTGAGCCCAGCTACTTTGAGATTCCCAGCAAGGAGGGACAAATGGCACAGAACAGCATCCATGAGATCCCAACAAAGGACACTGAGGGCACTGGGGCTGCAAAATCAGCCATGGCCAATGCCGCTTCACAGGCCAACACCTCATTCACCATTGAGTTTGATGATACTTCCCCAGGCAAGGTCACCATTAAAGATCATGTATCTCGTCCACGACCAAAAAAATCACCTCACGTTGGCGGTAAAGACCTTAGCACCCTGCAGGCAGCCATCATGGCCTCTGAGAGCAAGGTGGCCGACTGGCTTGCCCAGAATGATCCTCCTCTAGTGAGGCGTGAGTCCACAGAAGATGACAGTAAGAGCATCAAGAGTGATGTGCCTGTTCACCTCAAGAGGCTTAAAGGCAGCAAACACGAGGATGGCACGCAGAGCGATTCCGAGAATGGCTTGGGATTGCGGTTTGGCAGCAAACGCCACGCCGCGCTAGAAGAGCGGCTGAGAGCCGCAGGAGTGGGCCGGGTCAAAACTGAGGGGTCGTCTTCTGTGAGCCGCACAGCCTTTATGATCGAGTTCTACGACGAGGATAACCCTCGCAAGCGGCGCTCCTATTCGTTTTCGCAGACCGCACCGCTGCTCGGAGGCGTGGCAGGGGAAGGATTTTGCCCTGCACCGCCCTCGCGTCCTAAGGTCGTCGCCACGGCAGCGGACAGCAGCAAGGGCATGTCATCATCCCTAGCGGCGGTCGCCCCCACGGCTGCTCGACTCCTGCTTAAGCAGAGATCTGAGGAGCCGAAGGTGGTGCAGAGCCCTGCCGCTACCGGTCAGCCCAGTCCCACTGAGGAGGCTCAGAAACAAGACGATGACCAGAGCGACAAGGGAACTTACACCATTGAACTGGATAAAAGCAACCCTGATGAAGAGGAGGCACGGCGAATGATCGATAAGGTGTTTGGGGTGGAGGACTCTCAACAAAGAGAAGCCGGTGGAAAAGTGAAGGACCCCAAGAAGCTCAGCTCCACTGCGTCTGAGAGACTTGTAGAGGACTCTGTTGGAGTCGGCAGTCCTCGCTGGGTTTCACAGTGGGCCAGTTTAGCTGCTAATCAAACCAGAACAGACCCAGAGGGCTCTGGGGCAGAACCACCGGCTTTTGTCCATCAAGAGCGAGATGGTGATGCATTTGAAGCTGTCATATCTATCAAGAGCACTGGCTCCACTACTTCCAGCCAAGCTGAGCGCAAAAGAAGGACTTTACCACAGCTCCCCACAGAGGAGAAGATCAAGCGCTCTGAGATCGGTGAGAAGCAGGACACAGAACCCCAGGAAAAAGAAAGCCACAATGACCATAAAGGTGATGGCGAGTGCATCGGCACTCCGGATAGCAAGGACGTTGTGTCTAGCCAATCCAAGAGCATCCAGCAGGACGGGAAGCCAGGAAAACAGTCATCAGTGCGGCCCCTGGGAAGTGGAGAGAGGAGAGCATCAGAGGAGAGTCGCAGGAGGCGCTCTGAGGACAAGAGTAAAGGAAGTGACGGGGAGAGGTCTGGGAAGCCACTGGTGAGGCAGGGTAGTTTCACAATCGAGAAGCCCAGCGGTAACGTCCCCATAGACCTGATTCCTCGCATCAACCGGCAGAACGGAGGAAGGGAGCGGAGCGATTCGGTGGGCAGCATGGACACGGCGACCCTTCTCAAGGACACCGAAGCTGTCATGGCTTTCCTTGAGGCTAAACTCCGCGACGAGAAAAAGTTGGACCCGGTAACGCCCCCAGCCTGCCCTTTATCCCCGGAATCTGACATCGACACGGCCAGCACGGTCAGCCAGGCAGCAGCCGAGGGCGACCGAAAAGCAGTTCAGAAGCGTCGATCCCTCAGCAGCCTTTATAGAGAGAAGAGCAATGCTAGCACCACATCGAAAACCACAACCAGCGCAAGGGAGCGACTTGAGAGGAAAACCAAGACCAAGACCACAGAAAGCCGCTCGGATACGCGGCGTTCCGCGCAGACGTCCTCCCGGGGCCGCCAGCCGTCCCAAGATCTCACTGATGACGACCAGACTTCTTCTTTAGCCATCTCGGACATCCTCTCCTCGGACCAGGAGATGTATTCCAGTCGCTCACACACCAAAGGTCACTTCACCTCCACCGATGACCTTTTGCAGTCCAAGCTTGATACCGGCAAATCCACAAGGTCTGCGAAACCCAGCAAGACGCTGCAAGCTAGCACCGCTGCCCTCGCGAAACAGGCCGGTCTTCCTCAGCCCCGTCCCACCAGGGCTTCCCTGTTGCGCAGGGCTCGGCTTGGAGACACGTCGGACACGGACCTGGCGGACGCGGACAGGGTCTCGGTGGCGTCTGAGGTGTCCACCACCAGTTCCACTTCTAAACCGCCGTCGGGGAGGAAGGCGCAATCGCGCATCGACATGCTAGCGCAACCCCGGCGCACGAGACTCGGCTCGTTTTCAGCGCGGAGCGATTCGGAGGCCACGGTCAGTAGGACCACGGTCACACGTGTGTCCGCAGAGACGGCGCTTCGCCTGGGACTGAGAAGCGCAAATCAGCAAGCACCGGACAGCAAGCTGACCGCACGCATGAGGGCTAACAGTGTCTCCAAACTAACAGATCCCAAGCCGAAGACAGCACCTGTCAACAGCACCCCATCAGCCACTAACCGATGGAGACGGCTTCCTCCTGAGTACGCCTCTACCTCTGAGGATGAGTTCGGCTCTAACCGGAACTCTCCCAAGCACATCCGCCTGCGGCCGGGCACCACCCTTCGCACCAGCAGGCTGGGTGGTCCCGCTCCGGTCACCACCAGCCCCGGGGGTCTCCTCATCAAGAACAGGATGAGAGAACAGGAGGAGTACATACGAGACTGGACAGCCCACAGCGAGGAGATCGCCAGGTTATTTCCCTGTGTGCGCAGGATCAGTCAGGACCTTGCCAAGGACCTGGCCATCCTGGCACGAGAGATCCACGACGTGGCGGGCGAGATCGACTCGGTCAGTTCCTCGGGCACGGCTCCCAGCACCACGGCCAGCACCGCGGCGACCACGCCGGGCTCCGCCATCGACACCAGAGAGGAGCTGGTTGAGAGAGTTTTTGACGAAAGTCTAAACTTCAGGAAGATTCCCCCCGTAGTTCACACCAAAGCCTCAGAGATCAATGGCAGACCAGTGGAGCTTCGTCCCCGGGCCCCGGACAGCCTGGACCCTCAGGCGGCCCTGCGCAGACGCACCTGGAACCGGGATGAGGCGGTGCTAGACAGTTTATTGCTGACGTCGGTTTCCCAACTGTCTTCCAAAATCCGACAGTCTGTAGATAAAACCGCTGGCAAAATCAGgataCTGTTCAAGGACAAAGACAGGAACTGGGATGATATTGAGAGCAAACTCTGTCTGGACAATGAAGTGCCACTTCCCAAAACTACAAACAAGGACATTTCATCTATACTAACAGAGCTGAAGAGAGTAGAAAAACAGCTTCAAGTTATAAATGTGATGGTGGACCCCGATGGGACCCTTGACGCTCTGACCAGCCTCGGCCTGACCAGCCCAACCACCCCCAAACCCAAAAGCAGTCCTGGCTCTCAGAACGTATGGCCAAGTAACGGAGCCCCTCAGCCACCaccaccaacaacaacaacaacgatcAGCCCCGGTCCAGAGAAACCCAGTGTAGGACTCAACTTTAGCCGCACGCACCCTACCGGAGAGGAGAATGCCATCGCTAGCAAATAAAGACTTTCTTTTAGTAAACTGGACTAATAAAACTACATACTGTAACTCGTTCCTGAGCGGATCTTCtatgtgtatgtataatgtACTACGTACCCTCACGCAGGATTCTGTACGAGgtctgtttgttgttttaccCTGTAGAGTAACCTTTAGGATCACACTCGTGTATCTGGACCGACCGCTTAGCTCGGCACCTAAACACACGCAGCTGCATGCGACCGGAAGCAAGCCCAACGAACTGCCAGACGGATCCCTCGTGAACGGACAAAACAAAACTCCAGTGCCTGTCTTGCTCTCCTCTGAGCTTACCTTTCTTTTGATAATACGTTCGGCGCAGTTTGCCAAACTGACCGCAGCAGGCTACGCGCAAACTCAGTAACTTTTGAAATTTGTCTATTTAGATAACCGTCATTTTTGGAAAACGTTTTCCATTTTTGTGCATTCAAGCTATTCTAAATTAACTTAACAAGggttattgatttattttggtttcGTTCTTCGGGGAATGTAATGAAGAATTTTACAAGTTGAAATACCCGATTTTAAGTCTTTGCAAAATTTTGTAGCTTTCGATTACAAAACCGTAAAGAGAGGGAACCTGCGGACAAATGCATGGCATGTATTAATGGACTGGCAGACTGCACCCTGAGTTGATTTTATGCTCCCTCGATCGGCACAGCTGAATCAGCCTTATGAttacaagtgtgtgtgtacaaacaTTGTCTTCATGTCGCTCCGATACCTACTAGCCTTCTTCTCATGAAAATGTTCcacctttgtgtgtgtgcgttgttACCCGTTTCTTTCCTTCTGCTTTTAGGAGGACGTTGGCGTAAACCTGAACCACTTTACTAGGCCTTTATTTAGGAGCCCAGTAGGAAGAGTATTAGTGTAACTGTAGATTTAGAGGACAATGCAGACCGGTACCCGACAGAATACATACAGTGGGCTTTTTGCGTATTTTCTACATGTATGATGTCACTAAGTGCCCGATATTTCCAGCGTAGTCTTTCGGTCTTTGAGGATGACGAGACTTGATTCATTGTAATACAGTTTCATTTTGCACATCAAAGGCGTAATGTGAAATGAAGTAGTCAGTTCAGGGCACTAAAACGATTAGGTCACCACTAAATCCCGCTGTATTCACTACAAGATGCCTTTCCAGTGGGATGCCCCTCTGACTAAACAGCCTGCGTGAGAAGGGCACGGCGGATAAAGTGCTTGGTACATTGATTTTCCCTGTGTGGTTTACACATCGTGTATCATATCagtgtttcgtttttttttttttgttttaatgtatgttttatttatttttgtttcaattcATTTGTTATGgcactttttttccttttttacataattttgcaTATTCTCAATAAAGGGGGGAACAGCATATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135268 lncRNA upstream 26214 6370210 ~ 6370528 (+) True G91324
TU135252 lncRNA upstream 38726 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA upstream 105299 6279559 ~ 6291443 (+) False akt3a
TU135249 lncRNA upstream 134827 6254603 ~ 6261915 (+) True akt3a
TU135152 lncRNA upstream 394680 5998442 ~ 6002062 (+) True G91250
TU135295 lncRNA downstream 23357 6452744 ~ 6453076 (+) True G91343
TU135514 lncRNA downstream 264275 6693662 ~ 6699169 (+) True G91492
XR_006252288.1 lncRNA downstream 293893 6723280 ~ 6755554 (+) True LOC122356144
TU135555 lncRNA downstream 385623 6815010 ~ 6861516 (+) True G91529
TU135574 lncRNA downstream 513180 6942567 ~ 6942795 (+) True G91545
XM_043256082.1 mRNA upstream 38725 6279206 ~ 6358017 (+) False akt3a
XM_043256081.1 mRNA upstream 38725 6279207 ~ 6358017 (+) False akt3a
XM_043255716.1 mRNA upstream 154210 6227540 ~ 6242532 (+) True adss2
XM_043255718.1 mRNA upstream 154210 6234209 ~ 6242532 (+) False adss2
XM_043255487.1 mRNA upstream 184843 6210396 ~ 6211899 (+) True si:ch211-132e22.4
XM_043254849.1 mRNA downstream 15227 6444614 ~ 6451508 (+) True abcg8
XM_043255874.1 mRNA downstream 87496 6516883 ~ 6543229 (+) True ppm1ba
XM_043256147.1 mRNA downstream 116120 6545507 ~ 6553326 (+) True slc3a1
XM_043256255.1 mRNA downstream 131845 6561232 ~ 6654233 (+) True camkmt
XM_043256328.1 mRNA downstream 274700 6704087 ~ 6707392 (+) True six3a
TU134595 other upstream 1398846 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2152701 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2152701 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2152701 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2324843 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 702039 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1406803 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1429311 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1877099 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2236881 8666268 ~ 8683052 (+) False pcnx2

Expression Profile