RNA id: XM_043255464.1


Basic Information

Item Value
RNA id XM_043255464.1
length 2575
RNA type mRNA
GC content 0.42
exon number 4
gene id tysnd1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10951451 ~ 10955143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTACGCCAATGAAACCATACCAGGAAGTACTGCAGATGAATGTCGCGTGCAACAATATCAAGTCGGCGATAAgttaatatagtatttttaaattatctaGCTTGTCAGACGTATTCGTTGCAACTCTAACTATTAGTATTTGACAAGCTTTGTTTGCTAGCATGGTGTACTTTATAGTTTGACCTCCAGCGCCACGTTTGacattgtatattaaaattatcACAAGATGCAATaagtattactattattaccgTTACCTTAGAAAAACTGACAATTTTACTGAACCAACTTTATATTGTGatacataactatatatatatccaacatttgaaaatgaagaatGTGGAAGAAACATGTTGTGTTGTCACCGTGTCCGAGAAACGACTCGACCTCACACCTGGATCTCAAAATAAAGAAACGAGCTGTAGCGGAGTGTTTCTGAATTACCAGGCTGGGATTGTAGTCTGCAGTGGGATTTTGTTCTCACGCTTTATCAATGACAGACAGTCCACGAAGAAAGACGCGAAAGTACTGCATGCTGAAAGTTTCTCAGAAGAGATAAAAGTGCATGTAGATTACGTTCACCATTGCGCTAACCAATCGTGCGTAACGGACAGACGCGATACGAGCCGTCAAGAGGCTCGGCTGTTAATGATGATCAATTGTGTGGAGTTTCAGGATGCTTTTCGCAAGATCTTCAAAGGGGCTGATAACTGGGGCTTTTACAGTGGCACATTTGATACAGAAGTTCTAGAAGACTCCGTGTGTTTAAATTGGTTCGCGCTTTTAAAAGTGCCCACTTCATCCTTGTGCACCTGTAAGCAAACCGTTCCGTGGGTGAAGAGTGGCAGTCTTAAAAAGGGATGTCGTGTTATCGCGTGTGGGTCTCCATTCGGCGGTCTCTGTCCAGATCTCTTCATGAACACGGTTAGTAAAGGAATAGTTAGTAATCTGGCAGGAGATGAGAATGCCCTGATCCTGACCGATGCCCGCTGTTTGCCTGGCACCGAAGGAGGCGGTGTGTTTGTTGGCAGAGGAGGCAGATCTTACCTCGTGGGTTTGATCGTTTCACCGCTGTGCTGGAAATCGGACGAATGGATAGGGCTGACCCTCGTGTGCTCGGTTCACCTGATTCTGAAAAACATGCCACAGGCTGGTGCCATCCACAAGTCGCTGATAGAAAAGTCACCTCAGCTGATCACTGGCTCTCTTCAAGCTCCATTAACTGCAAACCGAAAGCCAGGCTCCGAGTTTTACCCTGGAGTGGTTCTGATCGAGAGTGGCCAGCTATGGGGTTCTGGTGTGCTGCTAAACCAGAATCTGGTTCTGACCTGCAGGCATGTGGTGAATGAAAAGTCTGTGCTTACAGTAAGAGTCAACTTTGGGGAAAGATTTCATGCAGTATGCGGTAAGGTGCTGTATTCATCAGCACAATCATCTCCCTATGATATCGCTGTGGTGGAGCTTCAGGAGCCCCTCGCAGACTcagtaaaaacacagtttacCACCTCCTTTCACCCGGGTGAGGATGTGCTTGTCGTGGGTTATGGAGCTTTAGGGAGCAGCTGTGGCCCTTCACTGACCTCAGGGATCTTATCCAGAGTTATTACTCATCATTCACAGCCTGTTATGCTGCAGACTACTTGTGCGGTGCAATCAGGAGCAAGTGGTGGTGCTGTGGTTCGCTCTGCCACTGGGGAATTGCTAGGTATCGTGTCCAGTAACACGAGAGACTTTGCAGCAAAAGTGACGTATCCCCACCTGAACTTCAGCATCCCGGTGACTGTTCTGGAGCCCCTGCTGAGACGTTTTGCTCAAACGAGAGACGCTGCTGTGTTTAAGCTCTTAGACAGTGCAGAGGACGATATCAGGAAGATATGGAGACTACAAAGCCTTCAGAGCAAGCTTTAATCAGTCGCCAAATTTTCAGCCTTTTAATTTGACTATTTAAGATTACACAAAATCCTGCTTAAATTTCTACAGTccttaaactgtttttatttttttttttcaacattatgaatggtcaaaacaaaacattgttctTTTCAACACTATGTATCATGTCATGAATCTACATTGCAACAATTTaggataaaatacatttttaagcataaCTAAATACAAccaatggaataaaaaaaaactgttttcagtcCTGGTTTCTAATTCGAACTTTAGATCGTTTGCTGCACTGTATCACTAATATATGAATGTGTTCCAACACTAAAACAATGCAGTGTTACAGCAGAGCTTCATCATACgcttttctgttaaaaaaaaaaagaaaccgaCGTTGAAAACCTAAAATGGATAGAAACCAAGACTGAAAACTGTATCCTAACTATTTCAGATTGATGCCAAGCAAGCTACACtggataatataatataatgctaaaatatgaaataacatGCCAATAATATATCAATGCAGTATTATAGTAGAgtataataacacatttttcctTCTTCATGTTAAATGTGGTGTAATTCTCTTAATGACAATATATTTGAAAGATGTGTTTACATCATGCCttctaataaaaagttaaaacatgTCTTCGTTTTTGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K23012 TYSND1; peroxisomal leader peptide-processing protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137407 lncRNA downstream 3720 10945204 ~ 10947731 (-) True G92829
XR_006252378.1 lncRNA downstream 151587 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 151587 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 155482 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 163947 10784852 ~ 10787504 (-) True LOC122356898
TU137414 lncRNA upstream 21390 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 31159 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 33271 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 34139 10989282 ~ 10991734 (-) False G92841
TU137420 lncRNA upstream 36248 10991391 ~ 10993798 (-) True G92841
XM_043254603.1 mRNA downstream 36695 10913050 ~ 10914756 (-) True trmt2b
XM_043255949.1 mRNA downstream 39622 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA downstream 39624 10906055 ~ 10911827 (-) False scdb
XM_043255947.1 mRNA downstream 45537 10898368 ~ 10905914 (-) True wnt8b
XM_043255558.1 mRNA downstream 57499 10886804 ~ 10893952 (-) True hif1an
XM_043255468.1 mRNA upstream 295 10955438 ~ 10958617 (-) True sar1ab
XM_043255467.1 mRNA upstream 4298 10959441 ~ 10964398 (-) True ppa1b
XM_043255007.1 mRNA upstream 198448 11153591 ~ 11185986 (-) True zcchc24
XM_043254566.1 mRNA upstream 231295 11186438 ~ 11192124 (-) False wu:fj13e08
XM_043254565.1 mRNA upstream 231295 11186438 ~ 11192124 (-) True wu:fj13e08
TU137394 other downstream 16120 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 760941 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1835900 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2903550 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3816309 7135072 ~ 7135142 (-) True trnag-gcc_69
XR_006252282.1 other upstream 245803 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 571037 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 816285 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1474054 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 1601934 12557077 ~ 12597302 (-) True LOC122356414

Expression Profile