RNA id: XM_043255468.1


Basic Information

Item Value
RNA id XM_043255468.1
length 1764
RNA type mRNA
GC content 0.37
exon number 7
gene id sar1ab
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10955438 ~ 10958617 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAGCAACCAGACGCCAACACGTTAACCTACAATCGATCTGAGACCACCCTATGCAGCTACGCAGTTCCGGTTAAACGTCAAATTTGGGCTGTTTTTTCAGCAGTGGAACACAGACCGGACTGACTGGTCTACAACAGAAGCGGACCCTTCCAGgGAACAGGCTACAAAATGTCTTTCATATTTGACTGGCTCTACAGAGGATTCAGCAGTGTGTTACAATTATTAGgACTCTATAAAAAGTCTGGGAAGTTAGTTTTTCTCGGATTGGACAATGCCGGGAAAACAACATTATTGCACATGCTTAAAGATGATCGACTTGGGCAACATGTTCCAACACTTCACCCTACGTCTGAAGAACTGACCATTGCTGGCATGACTTTCACAACATTTGACCTGGGTGGACATGCTCAAGCAAGAAGGGTTTGGAGGAATTATCTTCCAGCAATAAATGGGATAGTGTATCTTGTTGACTGTGCTGACCATGAACGTCTACAAGAAGCCAAAGTTGAGTTGGATGCCCTCTTAACTGATGAAACCATCTCCAATGTGCCAATCCTTATTTTGGGGAATAAAATCGACCGTCCAGAAGCAATTAGTGAGGATGCGCTGAGAGGAATGTTTGGTCTTTATGGACACACAACAGGAAAGGGGACTGTATCACTGAAAGATCTCAACCTGAGGCCAATGGAAGTCTTTATGTGCAGTGTGTTGAAGAGGCAAGGGTATGGTGAAGGTTTTCGATGGCTATCTCAATATATTGATTAACACATTTATGTGCTGATCAATTAAAAACCTGtgtattcttatttattaattgattatttatcTTGTAATGAAACTAGTAACCAGGGGTgttatatacactgtatatctGAAGCTATAAAATCCAGTGTGGTGATAGAGAATATCTGAGATATGCATTCATTAAAGCTACAGTAGCAATTACTTACATAAATCACGTTTACCTTAGCAGTAATTTATGCTATTTCCTTTTCTAAAAGCAGGGATAGAAATACAGTTTGCTTTAACAACTGAGTCGGGATATTTTAAGAAGTGGCATTAAGTTACagaatgctttctttttttcagttcagtgtCAGTTTTATACATGTGAAAGGCAAACATACCACTGAACGTTTAAATCTGGGATTTTAATCAGGTGAACATCAATTCTGGTGTGAAATCATCAGAAGATGgagaatcagtgtttttgttttcgtgTTACATTACCTCAGTGccttaatgttgttgttttttccacccgttcaaaggaaaaaaaaaaactctgaagtGATTCAGTGTGCTTTGCCAATGTATACATGCTTGCTTATTAAAATTGcctgatatttaaaatgaaatatttctatctaatatatataaaaagtacaaatatttgatttgtatgTAGTATTTTGATACTTTTACGATTGTGCTCATGTAGCACTCTGTGCCAGTGATGTCTACATCAGCCTGTTTCAACACTAAACTACCTGACTGTGTAATGAGTACTTGTTGACTGCCATCTGGAACTTACTCGCAGTTATGGCATGAGAGTACATaggctttttttaattcatagaAAATATACCTGTGCAATAGAAAAAGTGTCATATTAAtaggtttttactgtacataGGCTTACGTGAAAGTATTGGGATTTCCAGTGCTGCTTATCTTTTAAAATGGCTGATTATGTACCTGCCACGTGTAGCACTTTTATGCGCTGAagtaagcaaaataaaacaaatatgtatatattta

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137407 lncRNA downstream 7707 10945204 ~ 10947731 (-) True G92829
XR_006252378.1 lncRNA downstream 155574 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 155574 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 159469 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 167934 10784852 ~ 10787504 (-) True LOC122356898
TU137414 lncRNA upstream 17916 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 27685 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 29797 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 30665 10989282 ~ 10991734 (-) False G92841
TU137420 lncRNA upstream 32774 10991391 ~ 10993798 (-) True G92841
XM_043255464.1 mRNA downstream 295 10951451 ~ 10955143 (-) True tysnd1
XM_043254603.1 mRNA downstream 40682 10913050 ~ 10914756 (-) True trmt2b
XM_043255949.1 mRNA downstream 43609 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA downstream 43611 10906055 ~ 10911827 (-) False scdb
XM_043255947.1 mRNA downstream 49524 10898368 ~ 10905914 (-) True wnt8b
XM_043255467.1 mRNA upstream 824 10959441 ~ 10964398 (-) True ppa1b
XM_043255007.1 mRNA upstream 194974 11153591 ~ 11185986 (-) True zcchc24
XM_043254566.1 mRNA upstream 227821 11186438 ~ 11192124 (-) False wu:fj13e08
XM_043254565.1 mRNA upstream 227821 11186438 ~ 11192124 (-) True wu:fj13e08
XM_043255887.1 mRNA upstream 233688 11192305 ~ 11195431 (-) True LOC122356818
TU137394 other downstream 20107 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 764928 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1839887 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2907537 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3820296 7135072 ~ 7135142 (-) True trnag-gcc_69
XR_006252282.1 other upstream 242329 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 567563 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 812811 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1470580 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 1598460 12557077 ~ 12597302 (-) True LOC122356414

Expression Profile