RNA id: XM_043255484.1


Basic Information

Item Value
RNA id XM_043255484.1
length 6265
RNA type mRNA
GC content 0.47
exon number 30
gene id dctn1b
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6184574 ~ 6210258 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACATTAGCGCAGTTGCActgctctcacacactcacctaCCAACACAGATCAGTCAGACTTACACACATCTCACTCCAGCTCAGTCTAAAGCTGGGATCCTTCTGACAATTCGCACGTTAGCGGGCTCGTCTGAGCTCAGGCGTCCAGTAGGACCTCCTCTGGTGTCTCTCCCTGTGTCCCCTCTGGGGTTCAGTCTGTGCCTCCGCTGGAGCTGGACCAAAACGCACATCTCTGATACTCATCGTATGGACAAAGGCTTGAGTGATGAGAGTTAGGTGGAGATAGAGAAaggcagacagagagatagagagacggTGGCTTGGGGGGGGTTGAAAAGCCTTTGCTGGTTGCTGAAGCAAGGCAAGGAACCGTTGTCAACGGCGACGCAGCAGCAGCATGTCTCAAATGAAACGATACACTTACAGCAGGGGTTTTTCTCTCTCGTCCCAGACCACCAGCAGCGGCAGCAGCAGGATGAGTTCAGATGGAGGAGGGCGGCCTGTTAAGGTGGGCTCTCTGGTTGAGGTCATCGGGAAAGGTCATCGCGGCACCGTGGCGTATATTGGAAACACCCTCTTTGCTTCTGGGAAATGGGTGGGAGTCATTCTAGATGAACCTAAAGGCAAGAATGATGGGACTGTTCAGGGTAAACGATATTTCACCTGCCAGGAGAACCATGGGATATTTGTACGCCAATCACAGATCCAGTTAGTGGAGGATGGGGCCGACACGACATCTCCTGACACACCTGACGCTGCCACCTCCAAAATGCTGAAGCGGGAGATAATTGAAGGTCCAAAGTCAAACAAAGTGGCACCTACGACTCGTAAGACCACCACCAGAAGGCCCAAGCAAACGCGGGCTGGAGTGGGGGTGAAGGTGGGCTCAGGTTCAGCTTCTGCTGGAGAGATGAGCAGCAGTGAACCCAGCACACCTGCCCAAACACCGCTGGCTGCTCCAGTTATACCTTCACCTGTGGGGACACTGCCCTCACCCGGGGCTCCTCCCATCCCGGGACCCAGCAAGGAAGAGGAGTCGCTGCGAGCCCAGGTGAAGGACCTGGAGGAGAAACTGGAGACgctgaagatgaagaggacCGAAGACAAGGCAAAGCTCAAGGAGCTTGAGAAGCACAAGATTCAGCTAGAACAGCTGCAGGAGTGGAAGAGTAAGATGCAGGAACAACAAAATGACCTGCAGAAACACCTCAAGGAGGCCAAGAAGGAAGCTAAGGAAGCTCTTGAGGCTAAAGAGCGCTACATGGAAGAGATGGCGGATACAGCGGATGCCATTGAGATGGCCACACTGGATAAGGAGATGGCTGAAGAGCGGGCTGAGTCCCTGCAACTGGAGGCTGATGCTCTGAAAGAGAGAGTGGACGAGCTGACCATGGACCTGGAGATACTCAAACATGAGATAGAGGAAAAAGGATCAGATGGAGCAGCGTCGAGTTACCATGTGAAGCAGTTAGAGGAGCAGAATGCTCGACTCAAGGAGGCTTTGGTGAGGATGCGTGACTTGTCTGCATCAGAGAAACAAGAGCACGGAAAGCAACAGAAGCTAATGGAAAAGAAGAATTTTGAGCTGGATGCGCTGAGATGCCAGAAAGAGAAACTACAGGAGGAGATGAAGATGGCTGAGAAAACGATTGATGAGCTCAAAGAGCAAGTGGATGCTGCTCTCGGGGCGGAGGAGATGGTGGAGATGTTGACGGATCGTAATCTGGACCTGGAGGAGAAAGTACGGGAGCTCAGAGAAACTGTCACAGATCTGGAAGCCATCAATGAGATGAATGATGAGCTGCAGGAGAACGCCAGAGAGACGGAGCTGGAGCTGAGAGAGCAGTTGGATCTGAGTGCCGCCAGCATCAGGGAGGCGGAGAAGAGGGTGGAGGCGGCACAAGAAACGGTGGCAGACTACCAGCAGACCATCCAGAAATACAGAGAGCTCACCGCACACCTGCAGGAGGTGAACAGGGAGCTGATGAGCCAACAGGAGGCCAGCACCGAGCAGCAGCAACAGCCTGCAGAGATCTTCGATTTCAAGATCAAATTCGCAGAAACCAAAGCTTACGCCAAGGCCATAGAAATGGAGCTGCGTAAAATGGAGGTAACTCAGGCTAACAGACAGGTGTCACTGCTGATTTCCTTCATGCCTGACTCCTTCCTGAAGCACGGAGGAGACCATGACTGTATCCTGGCTCTACTTCTCATCCCACGACTCATCTGCAAGGCGGAGCTGATCAGTAAGCAGGCTCAGGAGAAGTTTGAGCTGACGGAGACGTGCTCTCAGAAGGCAGGGATGAGAGGAGCCGCCGGAGAGCAGCTGAGCTTTGCTGCTGGACTCATCTATTCTCTCACACTGCTACAGGCAACACTGCACAAATACGAACATGCTCTGAGTCAGTGCAGCGTGGATGTGTACAAGCGTGTGGGCTCTCTGTACTCTGAGATGAGCGTTCATGAGCGATCCCTGGATTTCCTCATTGACCTCCTTTACAAAGACCTGCTGGATGAAACCGTCAACGTGGAACCTCTTACAAAAGCTATTAAATACTATCAGCACCTTTACAGTATTCATCTCGCTGAACAGCCTGAGGACTGTACCATGCAGTTAGCAGACCACATTAAATTTACCCAGAGTGCTCTGGACTGTATGGCAGTAGAGGTGGGCCGTCTGAGGGCCTTTATACAGACAGGGCAGGACGAGGAAGCGTTTTGTGTGCTGCTGAAGGATCTAGACACTTCCTGTAGTGATATACGACAATTCTGCAAGAAGATCCGTCGTCGCATGCCAGGCACAGACGCACCCGGCATCCCAGCAGCCCTCAGCTTTGGAGCACAGgtgtgtgagACCCTGGCCGAGAGCAGAAGGCAGCTGGCCTGGGTGAATGCAGTGCTGCAGGAAGTGGCAGCAGCAGCCGCTCAGCTCATCGCCCCTCTCAGTGAACACGAGGGACTGCCAGCCATCAAACTGGAAGACATGGCCTTTAAAGCAGCTGAACAGATCTATGTGTCACAGGGCATAAACCCTCAGGAGTGTCTGCGGCAGTCGTGCAGTGTGGTCATTGCAACCATGAACAAGATGGCTACTGCTATGCAGGAGGGAGAATATGACTCTGAAAGACCACAGAATGGAATATCTCCTGTGGAAGTCCGAGCAGCAGCCCTGAGGGCAGAAATCACTGATGCTGAAGGACTCGGCCTCAAACTTGAAGACAGAGAGACTGTCATCAAAGAGCTTAAGAAATCCCTTAAGATAAAGGGAGAGGAACTGAGTGAGGCCAACGTGCGTCTCAGTTTATTGGAGAAAAAGCTGGACAGTGCGTCTAAAGATGCAGATGAGCGGGTGGAGAAGATCCAGACAGTCCTAGATGAGACCGTTTCGCTCCTGAAGAAGAAGGAAAAGGACTTTGAGGAGACCATGGATGCTCTCCAGGCTGACATAGACCAACTAGAGGCAGAGAAAGCAGAGCTCAAGCAGAGAATCAACAGCCAATCAAAGATGAGCATGGAGGGCCTGAGAGGAAGTCAAGGCTCTGGTATCGCTTCTATTGTGACCTGTGGCATTAGTGCTGaaGAACAAAAAGGTGTATGTGCCGCTTCAGGAGTGCAAGTGATAGATTCTCCACTGCTCACTCAGCAGATCGAAGCTCAGCGACTCAGTATAAAGCACCTGAAGAACGAGAACAACAGACTAAAGGCAGAAAAGATGCGTGCTCAGCTGGCGTCTCTTCCTCCTCTGAACGTGCCAAAGCTGGGCTGGCGGGAGGGCTGCAGGCCTGAGGTGTTGTCTAGCGCCCTCTACCGCAAAACAGACCAACTACTGGACACTCTGCTCCAGATGAGTGCCAATGTGAAGGTGGTGGACATCACAGGGAAATCTCCAGTGAGTCCCGGGGCACAGATCATAGAGCAAACAGCAAGACTGCAGTCGCTCAGTGACACACTCGATAGGCTTAAGGACGAGGTCGCTGAACACGTAGTGAGTCACAGGCCCGGTGCTCAAGTCTCGTCCGATTTTGCCACTTTTCCCTGCACTTCCTTTGTGAAGGCAAAAGAGGAGAAGAAAGGAGATGCTGTGTTGGTCGGTCGTGTGATGATGCCTTGCGCCCGAGGGCAGGAACAGGTGCATCGTCTGGTGCTTTCAAAGACACAGTTACAGAGAGTTCATGGCCTTCTCCAGACTTAAAATAACctcaaaaaataataacctCGCTTACATTCGGTCTTCAAAACAGAAATCGAAACAACAGATGTCATGGACAATGTGTCTAGGGCCACAAaccaataacaaaaaaacgCTATAAATCATGCCAAGCGTCTGGAAAGCTTTGATTATATCACACCAAATCTGTAAAATGATACGTAAAGGCTGCAGATTTTAAACATGAGACATGCTGAGGACGTTTTGACAATTAGACTTTATTAACGTAGCATGAAATGGATGATTCAGCATGATCCCTGCTGCTTTATATCTGTATCCATTTAATCCCTTTCTTCCTCTAACTGATTTGGATTCCTATTGATCCATGTTTACAAGTATTTAGCTAAAAGGTTTACAGTTCAAACTGTTTAATTAGTACTTCCTAAGTGATTTGACTTGAAGcgatagttgacccaaaaatgaaagttctttCATTTAATCACTCATCCTCATgatgttccaaacccgtaagaccccCATCTGAATGtgaattatgatatttttgaataaatctgaGAGCTTACTGACCTTTCATAAAGATGAATGTAAGAATGAAATATTCCCAGGCGCAGAAAAGTACTAAAGACATCATTAAGATAGTCCAAGTTCAGGCATGTTTCGTAATACTTGGGAATTCTTGGGAATGGACAGTGGAGACTGACACataagagaagaaattgttgaataaagttatttttgtgttctgtgtgcacaaaatgtattcttatAGCTTCATACGATTACATTTGAACCAATTGATGTCACTAGACTATTTTACTgtctttctgggccttgaatgtttCATTTGTGTTGCTGTATATGCATGGGCAAAGAGCTCTaggatttcatccaaaatatcttaatccaaaaatgaatgaaggtcttatgggtaTGGAAGGACGTGAAATTGGGTATTTTTTgacaaaagtaaacattttgtgGGGAAACTAAACCTTAGAAATGTTCAAGTGACGGGGAATAAAACAGGAAAATTGCCAATAAAACGGAGGTAGAGACACCAGTCATTTCGATTTGACATCCTCCCAAATACtctagcaaccgcatagcaactgCATCGCAATATACTAAGAACAACTGAAAATCTTATAGCATTGCTCTAGCAACTACCTGAAGCACCATCAAGTCCTGCATGCACAAGCATCGCTTACATTATCttcataaaacctaaaaatctagtttttaatcaaatgtgcaGTCTCATTTGTGGTTCGTTGAATTTTCGTGGGCAAAATCCAGTCATTTCAACTGGGAATGTGTTCAgtggtttgaaagtgacttctgtGTGAGCTGTGCTTCATGCATACACTTCATGCTACCCTCTTGTAAGCAGACAACTAAACTTATTTTGCTCACAAAATTTTGCTGATGCGAATACACCTCAGTTATCAAGTGTTTCAAACCTTTGATTTGCCATTTTATGCATGCAGTGTTTACAGGAGGCCAAAGGTAAACTAAAACCCAATTTTGGGTCTCTATTTATGTAAACAAGCACAAGTTAATTGATTATGTTTTTTTCGTTAAAACTGATCAGATGCTACTTTATCAGTGATTCCTGGACACAGCCCTCTTCATATACCCGTTACAGTTACTCAAGTATCAGACAGGAAAGATAATAAGTTCTCATTCACTTTTCACTTATACAATAACAGTCAGATTTTAAAACTCTGTGTTGCTTGACTGTGATGCTTGAATGTGCCATGCCAATGTGcttttgtaaagaaaatacaATGCAAATCTTAACGAATGATCAGATTTAGTGCCAATTAAGGGCAGGTTAACATCAATTGAATGCTGCTGTGGGCAAAAATAGAGAAGGCGtcatataacaatatttattaactgTTGAACATTTGTTTCAAGAGATTGTCAGTATTCAAGTGGTCTTAAGTTAGCAAAGGTTTGCTATGTTACTATTGTCTAAGTTATTAACCTGTTATTTAACTGTATAAAGTGCATACTGTTGCTTACAGTATTGTTGAATGTGTAGGCATCTTATATTTAATGTgagtcaattaaataaatgatgtctGAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135152 lncRNA upstream 185097 5998442 ~ 6002062 (+) True G91250
TU135142 lncRNA upstream 200180 5985544 ~ 5986979 (+) False commd8
TU135036 lncRNA upstream 230561 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 234642 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 259026 5927834 ~ 5928133 (+) True G91180
TU135249 lncRNA downstream 44345 6254603 ~ 6261915 (+) True akt3a
TU135252 lncRNA downstream 44345 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA downstream 69301 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 159952 6370210 ~ 6370528 (+) True G91324
TU135295 lncRNA downstream 242486 6452744 ~ 6453076 (+) True G91343
XM_043256228.1 mRNA upstream 4131 6180654 ~ 6183028 (+) True nat8
XM_043255614.1 mRNA upstream 7500 6174314 ~ 6179659 (+) True slc39a8
XM_043255615.1 mRNA upstream 7500 6174314 ~ 6179659 (+) False slc39a8
XM_043255616.1 mRNA upstream 8383 6174314 ~ 6178776 (+) False slc39a8
XM_043255612.1 mRNA upstream 13445 6166509 ~ 6173714 (+) True manba
XM_043255487.1 mRNA downstream 138 6210396 ~ 6211899 (+) True si:ch211-132e22.4
XM_043255716.1 mRNA downstream 17282 6227540 ~ 6242532 (+) True adss2
XM_043255718.1 mRNA downstream 23951 6234209 ~ 6242532 (+) False adss2
XM_043256082.1 mRNA downstream 68948 6279206 ~ 6358017 (+) False akt3a
XM_043256081.1 mRNA downstream 68949 6279207 ~ 6358017 (+) False akt3a
TU134595 other upstream 1189263 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1943118 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1943118 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1943118 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2115260 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 921168 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1625932 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1648440 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2096228 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2456010 8666268 ~ 8683052 (+) False pcnx2

Expression Profile