RNA id: XM_043255494.1


Basic Information

Item Value
RNA id XM_043255494.1
length 2375
RNA type mRNA
GC content 0.40
exon number 9
gene id dennd10
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6867698 ~ 6871804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAGTTGAACTTGGAGAAACCCGGAAGAAGCGTGTCGATCACTTGACCAGTAGTGATTCCTACTGTTTTGACAATTTTCGGTTTTACGCGTTTGTCgtttttctctgtatttttttttttccgttgcAGCACAAACTCGGAGGAATTGCTGCAACTCAACAGCTCCATTCCATGCACTGATAAGTTAAAATCCGCGTGATAATTGAAAGCGCTTCGTCTTACATGAGAAAACTCGACTGGGACTGGACAACatcaacatcttttttttttttgcaagaacaACCGTAGCTTCTAACGCTATAATTGTTTTCTGTCCCGGCATATTCGACAATGGCCTGTGTCTGTTGGTGCTGACAGTTGCATGCTCTTTCCAAACTAAATGGTTAGAGGTATTGAAGTGCTAAAAACAGATTAACGTGGTTAAGGAATGGAAAATGGCTACATCTGAGATTATGCTAAGTCTTGGACTAATTGTGCTGATCTGCGAGAGGTTCTGTTGAGAAAGTGTTGCCTGCCGTTGAACAACCAGGTGCTGCACACCTTTGTGTTTGGACAGCACTGCCGAACCTGGTACTACATCACCACTGTGGAGGTTCAGGAGCCATCCGCGcttaaaaagGTGACGCATTTCTCAGTAGTTATCACAGCTAAGGACTTCAACCCTGAAAAGTACGCTGCGTTCAGTAGAGTTCTGTGCAGGACGTATACCAAACATGGAAGTCCAGTGAAGATGATGGAGTGCTACATTGCTGTTCTGACCAAAGGGATTTGCCAGAGCGATGAGAACGGCTCCTTCCTTATCAAAGATTATGATATCAGGAAGGCCTACCTGGCCGGATCCTTAAAAGatgttgtGTCACAATTTGGTATGGAGACCATCATCCTGTACACAGCACTAATGTTGAAAAAAAGAGTGGTGGTCTATCACCCCCGGATTGAGGCTCTGCTGGAGTTCACAAGAGGTATTCCCGGATTGGTGTGGCATAGAAAAGACTGGTCCATCCTCCACCCTTTCGTTCACCTGGATGATAATGAGCTGGAGAACCTCAAGCTGTGTACAGGGTACGTTGCAGGGTTTGTCGATCCCGAAGTCAGAGACAGATCGGATTTGTTTGATGTGTATGTTAATCTTCCAGACAGTGAAATCACCGTGTCACAAAACGCTAAAGAGGCGATGGCTATGGGAAAACTTCATAAAGAGATTGGCAACTTCATTGTCCAGGCAGCAGAGGACACTGATCGCACAGATCCACAGGTTATTAAGGATATTTCGGTAAAAACTAAGGAGATCCTCAGTAACCTGATGTCTCTTGCTGATGAAGCAGATAACTCTAAACTGACTTTGGAGTCTCTGAAGCAGAGGCACTACCCTCCAGCCACTGAAAACTTCCTCTTCCACTTAGCTGCAGCCGAGCAACTCCTGAAGATCTGACCAATCGGTGTATGCAACTGGCACCGATCGGAAAGGAAGAACAGCAACAATCTGTGTATAATTTCAGGGGTAGTGAACAGGGCAAAAGTTAtataagaacaaaaatatatttcatagaaagatatataaaatgtaGCTATATAAAACATGATGGCTACACCTCATGAGTGTAAGTATGTTGAATGTAACATTTGTATGTGATAACAGGTTTGAGATAAATAACCTTTTGGTAACATATGGATTTATAATTTTGTCTCTGAAAACATTCCTGAGGTACTAATAATGTTCATAACCTTAATCTGGCATGCTCATAATTGCACATCAGTGTGAAAGGGTTGACTAAAGgacatttattttgaagggtcccattacatttcaaatgtaaaaaaaaaaaaaaaaaaaaaaagtcacttaaaaCCAGTTTTACTTAACTATTGCGTGCCAAAACCTCATCTTAAAGTTGTGATGTTAATTAGTCTCTTCATGTCAGAAATCTTTTTATCTAATATGCTCAAGTGACAAAAGACATTCCCCATGTTAGATGGAAATGTGTTCCCACATTTTGCATTTCTGCAGTGATTGCATTCGTTTAATCTGCTTAATAATGTGACTAACCCTTGTTATCAAGGGGAAACCTTTGTGCCTAAACAGATCATAGaagatatactgtatgtgtgcaaTATATCCTGAAAAAAAGAGGATGCTTAAACGTTCTTTAACACCATCTTCATCCTTTACATAGACTCATTCCTCAGAtactttgttaaatatatatatatatttatgtgaccaataaataaacaaatatgttattGTGAGTGGCAACAGGACACAAGCACAGCGTTATTAGCATAACCTGGTAAAATCCACTTCAGTGCAgtgtttaaaacgtttttttagcCTGACATGCAGCtattaaatgaatatgaattcaCAGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135536 lncRNA downstream 80091 6787267 ~ 6787607 (-) True G91513
XR_006252424.1 lncRNA downstream 163775 6693662 ~ 6703923 (-) True LOC122357105
TU135512 lncRNA downstream 180403 6687077 ~ 6687295 (-) True G91490
TU135475 lncRNA downstream 329330 6536601 ~ 6538368 (-) True G91459
TU135474 lncRNA downstream 368142 6497941 ~ 6499556 (-) False lrpprc
TU135614 lncRNA upstream 7420 6879222 ~ 6879894 (-) True G91574
XR_006252306.1 lncRNA upstream 145421 7017223 ~ 7045575 (-) True LOC122356287
TU135810 lncRNA upstream 938058 7809860 ~ 7810104 (-) False si:dkey-191g9.7
TU135853 lncRNA upstream 1107018 7978820 ~ 7980706 (-) True G91758
TU135856 lncRNA upstream 1112144 7983946 ~ 7984316 (-) True G91760
XM_043255496.1 mRNA downstream 3901 6861288 ~ 6863797 (-) True prdx3
XM_043255739.1 mRNA downstream 27137 6788832 ~ 6840561 (-) False srbd1
XM_043255741.1 mRNA downstream 27137 6789153 ~ 6840561 (-) False srbd1
XM_043255740.1 mRNA downstream 27235 6788832 ~ 6840463 (-) True srbd1
XM_043254638.1 mRNA downstream 144832 6720061 ~ 6722866 (-) True six2a
XM_043255800.1 mRNA upstream 122350 6994152 ~ 7010113 (-) True LOC122356744
XM_043256324.1 mRNA upstream 184447 7056249 ~ 7071527 (-) True fam204a
XM_043255725.1 mRNA upstream 226568 7098370 ~ 7105204 (-) True LOC122356717
XM_043254667.1 mRNA upstream 427781 7299583 ~ 7300598 (-) True apcs
XM_043256320.1 mRNA upstream 429379 7301181 ~ 7362010 (-) False gfra1a
TU135441 other downstream 476983 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 641965 6225261 ~ 6225733 (-) False LOC122356805
XR_006252268.1 other downstream 2178530 4672966 ~ 4689168 (-) False LOC122356061
unassigned_transcript_1925 other upstream 259343 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 263270 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 1171763 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 2243291 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 3313959 10185761 ~ 10190510 (-) False LOC122356841

Expression Profile