RNA id: XM_043255501.1


Basic Information

Item Value
RNA id XM_043255501.1
length 3088
RNA type mRNA
GC content 0.48
exon number 10
gene id ncoa4
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3417534 ~ 3426736 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTGGAAGTCACCGAGTGCGTTGTGCCGCGGTCGCGCCGCAGTCGCGCGCCCCTCAGAGTGGGCCCCGTGTACGTGCGGAATCAGCGGGCGCTCGTGGAGGCGGATAGGGGCGGGGCCGCCTGCGTCTGTGGTGACGTCGCCGTCGGCCGAGGAGAGATAAAGCGTGAGAACAATCACACTTTCatctaaacacacaaaaaaccaCGCTTGGATTGCGTTGACCACCGCTGTGTATCGCGCGATTGACGAGACGAGCATGTCATCCGTGGGGCAGAAGGAGAAGGCTGCCCTCAGGCAGTGCGTTCAGGCCCGGGCCCAGCTGGAGGAGGCTATCGTCGGGGTCATCAAGGCTGAAGTTCAGCTCAGGAGCAACTCCAGGGAGGTGAAGTCTCAGCTGCACAGCTGCATCAGCAGACACCTGGAGATCCTCCGCTCTCGTGAGGTCTGGCTGCTGGAGCAGATTGATCTGGTGGAGCAGCTCAAAGGAGAGACTTTACATCAGCAGCTACAGCAGCTTCATTTGCTCAAAGGCCAGTTTGACATCCTTATTCATCAGCTGGAGTATTCCAGTAGTAACAATCTAGCCACCCAGCTCACCAACTGCCTGGAAAAGCTTTCTTCCCTCAATCTGACTCCTGACGAAAGCCCAGAGATGAGTTTCCAAGCAGATGCACGCAGCTTGCGCCAGGCTATCACATCCTTTGGGACCATTTCTTCTCAGCACATGGAGACCTTGAACTCTTCTGAGAGACCATGGCTTCTCCAGGACTGCCCAGTTTCTTGCAAGAAACAGAAATTAGATCCTGAATGGGCCACACCTCTGGCCGAGTGGCTCATAGGGAATCGTTCAGTAAGCAGCGCTCCTGTAGGACACCACCTCAGCACGAACCTCCAGGACTGGCTGCTTGTTTCCAAGGAATCTCAGGAAGAGAGACAATTACCCGCCTTTGACTTCCAAAAAGCCTGGGGCCAGCTTCAAGACCTGGAGACTTGGCTTCTTAAGGAGAAATTGCCAGTTCGTGAGCGAACCTGCAGCGGAAGCTCAATCTTCTCGATTGAGATGATTGAGGAAAGCGACCTAAATCTGGATGAGGTTGAAGTGGAAAACCAGCAGGACAAATGGGATGACGCTGTTGAGGAAGAAGAACTCAGCAAGTGGCTCTTCAGCCCGAGCCCGGTCAAGCAAGATAAAACCAGCCCGGTGTCAGATGCTGACCGCTTCAAGCAAATCATCAAACCCTTTTACGAGAGCTTCTCCTCCAGCGAATGGCTATCCAAATCAGACTGCAGCTCTTGCTGTGCCACACGCACCACTGCCGTGGAAATCGAGAACCTCGGAAAGCTCAAGTGCCTAAAAACTCCACCCTCATCCGCTGCCAGCACTCCAGAACCCATCGAGATGTGGCTTCACAAGACCATCCCTATCGAGACCACCTGCAAAGCCAACGAGACCTGTGCCAGCTACTCTGAGTGCGTCTGTGATGACAACTGTGGAAAAGAGGCCCTTAGTGCTTGGCTCCTCAAGAAAGAGGGCCGAGATAAGAATGGCGTTCCTGTCAGCAAGAGCGCCGCAAACAAAGCCTCCAGCCACCAGCAGGAGCAGCAGCAGAAGGTTCAAGCCATCCTAGAGGCCTGGCTACACCCGAGCAACAGTGCCAAGTCCCCTGCCCTGTCATCCCTCTCGGCCTGGGTGACCCCGTGCATCAAAACCTCAGACTCTGAGACCTCTGTCCAGGAGCCTTTGCAGAACTGGCTTTCGCCAGCGATGAAGCACATAAGCACAACCACTGAGAAGACAAAGAGCGAGAACGTCAAAGAGCAAGACAGCAAAGACATCGAGGAGGACAAATGGCTTCTACGTAAACGGGCCAGCACACAGGAAAGGCTAGGCCTACCCACAGTATGTGACCTGTTTTCCTGTATGAAGCTCAACGGAGACAAAGAGAAGTGGCTACATCAAGCAGCTACGCTGaTATGAATGCAACCATCGGCTTTTGGAGGTTGATTCTAGCGCCATGTAATTGCTGATTAttgcacaatattatttttctttagtgCTCTTTAGGAATTAATTCTCTCTGTAACCTTCTGGAGATTGTATGTGTGATTTTGAACTAAAAGTCCTGTCCAGGAGGCAAGGCTTTGGTGAACATCGCTTGAGGAAGTGTTCATGCAGGGGAATTGCTGTCATTTTGCCCTTTTAGTGGCTCAACGCAGTTGAATTCCAGTAAATGTGGTGGAGGCCAACGTTTTTATATAAGAATTCAGTGATTTCGAAATCATGAGGAAATGGATCAGATTGGTGCatacaaaacgttttttttttcttacagaggcatactttaaaattaaaaaataaatctatattaatTTCACGCATAGACACAGCTTTTGCTCTAAATCAGAGAATGATTTCCTCCGTCATCAGTtctgtgaatatatatttatatttatatagattttactATTTTCTCAAGTATAGAATGAGCTtcctttgctgtttttattacttttatttcgATGATTATTACTTTTTAGTGGCATGTAAAATGTCAGCCAAACATAGCATAACTTGTGTTATTGGAACCTCCAGAAATCCGATAACTCGTGCCTGACATCGAATGTGTAGCAATGCTGGCCGTCGGTCCACCTCCGGTACGTGTGGAAATCAATCCACCAAAGTTCACCGTTTCTGCTGTGTCAGGGGCCGCAGCAGATGTTTGTCACGTGCTGTTTGTGTTAGGCTCAGAGTTGTGGTAAATGTTTAGCATAGAATCACTATATAGTTCTTTTTCAATTGAAATGCTCGCATTAAGTACTGGTACTGCTTGATGCCTCTCACCCTGTCAACATATGAAAGATTTCTACTTGGCCGCCGATGAAACTGGTTCACAAATTAAACTGCTTCTTTTAGGCAAAATTCAGTTTTCATGAATATTAACAGTGcagaaaccttttattttttttctgtcagcaTGTGCCAGTGTTGGACTGCAGTATTGCACACGTACACATGTAGGTTAATTGCTTACATGATCTCTAATGCTTTGATCCTGTCAaccgaataaataaaaatacacaagtcA

Function

GO: NA

KEGG:

id description
K09289 NCOA4, PTC3; nuclear receptor coactivator 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133839 lncRNA upstream 14820 3401964 ~ 3403754 (+) True G90373
TU133829 lncRNA upstream 102666 3315663 ~ 3315908 (+) True G90365
TU133809 lncRNA upstream 140314 3051982 ~ 3278260 (+) False LOC122356070
TU133844 lncRNA downstream 23437 3450173 ~ 3450485 (+) True G90378
TU133848 lncRNA downstream 42711 3469447 ~ 3489791 (+) True G90381
TU133855 lncRNA downstream 75332 3502068 ~ 3543652 (+) True G90388
TU134029 lncRNA downstream 142332 3569068 ~ 3569492 (+) True G90514
TU134092 lncRNA downstream 425474 3852210 ~ 3855543 (+) True G90564
XM_043255234.1 mRNA upstream 20216 3320429 ~ 3398358 (+) False tjap1
XM_043255503.1 mRNA downstream 7787 3434523 ~ 3440314 (+) False LOC122356604
XM_043255505.1 mRNA downstream 7961 3434697 ~ 3440314 (+) True LOC122356604
XM_043255504.1 mRNA downstream 8728 3435464 ~ 3440314 (+) False LOC122356604
XM_043255957.1 mRNA downstream 193670 3620406 ~ 3710998 (+) True prkn
XM_043255959.1 mRNA downstream 193671 3620407 ~ 3707717 (+) False prkn
TU133814 other upstream 133168 3174735 ~ 3285406 (+) True G90350
TU133812 other upstream 137577 3277837 ~ 3280997 (+) False G90348
TU133811 other upstream 137577 3279202 ~ 3280997 (+) True G90348
TU133796 other upstream 144202 3271325 ~ 3274372 (+) True G90343
TU133820 other upstream 208842 3207776 ~ 3209732 (+) False LOC122356782
TU133843 other downstream 22665 3449401 ~ 3450017 (+) True G90377
XR_006252394.1 other downstream 193670 3620406 ~ 3713763 (+) False prkn
XR_006252399.1 other downstream 382317 3809053 ~ 3829741 (+) False pkdcca
unassigned_transcript_1924 other downstream 645070 4071806 ~ 4071899 (+) True trnai-uau_4
TU134239 other downstream 755763 4182499 ~ 4244041 (+) False G90660

Expression Profile