RNA id: XM_043255504.1


Basic Information

Item Value
RNA id XM_043255504.1
length 3574
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC122356604
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3434523 ~ 3440314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagaatgcaccgtGTCTGCATAGTTGTGTTTCCTGTTTACCGTTGTAAACGCTTTTGTTTGGCCGTTTTTCCCTTCGTCGTCGAGGTCTGAAGTAGATCGCTATGGATTTCTTTCGCCGCGGTTGATCGGAGGAGGATTTGCGGAGGTGTAAATTAAGCCTGGAGTAATCGCAGCTCCCCAGTGAGAAATCAACAGAAGGGCCGTGAAGATCAGCCCTAATGGAAGAGACGGAAACAGAGCTGACCTGCTTCGAGCAGGACGCTTTAGGAGCAGACTTCATCACGGTGGAGCTCGACACCCAGCCCATCGAATATGTGGTCAAGTGGGCCGAGGTGGGCTCCAAGTTCACTATAGCCTGCGTGAAGAAGGATCTGGACGAGGCGGCCTGCTTCACCTCGGACCAGATGGTCAAAGTGGAACCGGACGAGACGTTCTTCGTCCCTTACGAAGCGGTGTACCCGGAATGCGACGAGGCGGATCCCGATTTGATCGCGACGCACGAGGAGGAGGTGGGCAGCGAGTCGGACTTCAACGACGACGCGGAAGCGGGGGACGGCCAGCCGTGCGAAGAAGAGGACGTTACCGACGCGTGCTGGGAGACGGAGGTGTCTCGCGCCAGAACGTACGACTGCCACGTCTGCGGCAAGAGCTACAGCCATTCCTCCAGCCTCGCTCGGCACCTGCACGTGCACTCGGAGAAGTCGGACTTCCCCCCGTCGGAAGACGTCGGCAAGCTGTGCGACAGCAAAAACTCGTTCCAGTGCAATCTGTGCGGGGTGAAGTGCAACGGCAAGCGGCTGTTGGCGGTGCACAAGAAGTGCCACAAAACCAAGAGACTGCACACGTGCAGCACGTGCGGGAAATCGTTCAATCACAGCTCCAGCCTGTCGCGGCATCGCTTGATCCACAAAAAAGGCTTGGATAAGAGCGTCGGGCCGCTGTACCCGGCCCCGGCTCCCATCGTAACCCAGCACGGCGTCCCGGCGGGGAAGAGGGCGCTCGAGAAGCAGTACCAGTGCGCGCAGTGCGACCGGGTCTTCAGCCACTCGGCGGGACTCTCCAAGCACCAGGTGGCTCACGTCAGGCAGCTGCTCAACTCGTACACCCACGGCAAGGACTCCCTCGACAAGCCCTCGGACCTCAAGATCCGCTTGAAGCTCTGCTCCCGCGACAAGCCCAACTACTACACCCTGTGCAAGAAGAACAAGCGCGGGAAAGGAGGCAAGAAGAGGCCGTACCCGGCCGACAAGGAGACGCCGCACCCCTGCCGGGTTTGCAACAAGCGCTTCGGTCCCAGCGCGGGCCTCTCGCGGCACGCTCACACCGGAGACAACCGCTACGCCTGCGGCATCTGCAAGAAGACCTTTGTCCGGCTTTCCAACCTCAAGCAGCACCAGCAGACCCACGCCTCGGGGAAACTCTACCAGTGCCCACAGTGCGGGAAAACCTTCGTTCACTCCTCGAGCTTCTCGCGCCACAAGAAGGTCCACGCGGCCATGAGCCTGTCTCCCAAACTGGAAGACGCCCGCTGCGAAGAGGAGCTGGTCATCGACGAGGTGGCCCCGCTGGAATACGAGTCCGAGTGAGAAAGACGATGCGCGATGGGGGGAAGAAAATGTCGCCGTTTGGTTTTGTTCACCCCTCGTTGTTATTTCGTGATTACTGGCACTGGCTGTGTTCGTTATTATAAACCTTTTCAGACACTTTTAGGGGATGCGGTAGGCACCGGatgcttttcttttgttgtttgtttgtttgtttgttcggtTGACATTCCCTTTTGTCTTTCGTTCGTTCGGTTTATTTGCGAGACAAATCGTGTCGTTTATGTCCCTTCAATGTTAGGCATCCACAAGAAAATCTAAAGAGACGAGCAGATGGGATCGGCGACGcaggtgttatttattttatgtttcaccgcaaaaaatgattttccgGGCTAGAGTTTTTGTCGTTTTTAGCCCAAGTTCTCAAATCGAGAGAGATTTTCTAGACAActaaaaataagtcaaaattaCGTTTTCGGGGTAAGataaataatcttatttcaaacagaagacaagattattttgcttatatCCCATTGGCTGATTATTATGCTTAAAAACCCACTtcattttagcttgtttttttttgcctcttgATTTGAGAGTTTCTAGATATTTCGGCTGGAAACGAGACAAACGTTTTTGgctagaaaaacattttctgcaGTGTTGTCATGCTTGCACTGAATCCGCGAACCCAAAATTAAGTACCTATTGGAGTAAGGAAGAGGTAATATTAAATTCAAGTTTACTAGGAGTTTTGTACGCAAGAGCTGCTTAGACTTGCTTACAATCTCCTGCCGTTCTGTTTAGTAACCTAATTTCTTCGACCAACAAGTTCAAGGCTGGAGACAGAAAAACAGGTTTTGCTGTGTGGTTTCATgggatatatataaaaacacacaacaaaagcGTATACAGTATAAACCGCTGGTCGAGTGCAAACGGAGAAGCTGCGTTCCGGGTGTATTTTGGGGTGTTTCGATTTGTTCTAGTTTCCTCAACATGTCTTTTGGTACTTATTTCCTCTTTGATGTTCTTTTGTCAAAATATGAAATCCATTGTGTCCATGGAGggtatttatgaaaaaaagaaaaagaaagaaaaaagatgctTATCGGACACGGACATGTATAGCTGCACTTATAATATTGTTGATaggagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgaatacGAGAAAAGAATATACCCGCAAAACGTGTGCTTTTTACTCCTGCTGTATATGTGTAAAAAGTTGCGGTTGCAAAAAGAAGTTCTATCcgatttatttttctgtatctGCATAAGTTAAGGAATAGCCAAGggatttcatattttaacaagCATTGCACTATTTATAGACGGAAGCACTACACAGTTAGGAAATTGGAACGAGGCTTTGGTTCTCCCGGTCAAAACGTCAGAAAAACGAGACACGGACAAATATCTTCCACGcatttcgaaaaaaaaaaattgataagtGCCCTCAGCTACTTTGTGTAAGACCAAAGCTCTTGGGTGCAGTCGAGCTCTTCAGAGGTGTTCGATGTTAGTACGCGTCTGGACTTCTTTGCTCACCATTTGCTATCTGAATGGAAATTGAATAGCGATTATTAACCTATTTATGGCGTTTGGAACGAGACGTTGAGGTGTGTTTGGGCGCTCGTGTGAAGCACAGGAGACGCTGTTGCACCCAAAgtgatgttattaaaaaaaaagtttttttgagtTCCTGGTTGTTTTTAACGCATAAGTCGTATCCCCCAGTCTTActgccattttttaaaagattcttTCCAATAACGATATAAGGTTTATCGCTCTCCTGTCCACACTTCTCATGTTTTGGtttaaatctgtcatttttattttcaaatgctgTAGCTGTTTCATCTCTCAATGCAGCAGACCTACATCTTACACAGAGATGTAcgtttttgtattgtgtttgcCATTAGATAACAGTTTGAGAGTTCtgtcttgcattttttttgtaataaataaattggttCACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133839 lncRNA upstream 31710 3401964 ~ 3403754 (+) True G90373
TU133829 lncRNA upstream 119556 3315663 ~ 3315908 (+) True G90365
TU133809 lncRNA upstream 157204 3051982 ~ 3278260 (+) False LOC122356070
TU133844 lncRNA downstream 9859 3450173 ~ 3450485 (+) True G90378
TU133848 lncRNA downstream 29133 3469447 ~ 3489791 (+) True G90381
TU133855 lncRNA downstream 61754 3502068 ~ 3543652 (+) True G90388
TU134029 lncRNA downstream 128754 3569068 ~ 3569492 (+) True G90514
TU134092 lncRNA downstream 411896 3852210 ~ 3855543 (+) True G90564
XM_043255502.1 mRNA upstream 8728 3417534 ~ 3426736 (+) False ncoa4
XM_043255501.1 mRNA upstream 8728 3418574 ~ 3426736 (+) True ncoa4
XM_043255236.1 mRNA upstream 37106 3320431 ~ 3398358 (+) False tjap1
XM_043255957.1 mRNA downstream 180092 3620406 ~ 3710998 (+) True prkn
XM_043255959.1 mRNA downstream 180093 3620407 ~ 3707717 (+) False prkn
XM_043255958.1 mRNA downstream 203021 3643335 ~ 3710998 (+) False prkn
XM_043255861.1 mRNA downstream 273519 3713833 ~ 3717294 (+) True LOC122356793
XM_043255862.1 mRNA downstream 276982 3717296 ~ 3729468 (+) True si:ch73-193i2.2
TU133814 other upstream 150058 3174735 ~ 3285406 (+) True G90350
TU133812 other upstream 154467 3277837 ~ 3280997 (+) False G90348
TU133811 other upstream 154467 3279202 ~ 3280997 (+) True G90348
TU133796 other upstream 161092 3271325 ~ 3274372 (+) True G90343
TU133820 other upstream 225732 3207776 ~ 3209732 (+) False LOC122356782
TU133843 other downstream 9087 3449401 ~ 3450017 (+) True G90377
XR_006252394.1 other downstream 180092 3620406 ~ 3713763 (+) False prkn
XR_006252399.1 other downstream 368739 3809053 ~ 3829741 (+) False pkdcca
unassigned_transcript_1924 other downstream 631492 4071806 ~ 4071899 (+) True trnai-uau_4
TU134239 other downstream 742185 4182499 ~ 4244041 (+) False G90660

Expression Profile