RNA id: XM_043255511.1


Basic Information

Item Value
RNA id XM_043255511.1
length 2305
RNA type mRNA
GC content 0.47
exon number 8
gene id eef1a1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24846449 ~ 24851300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGCAGCAGTCTGCGTGCACGTGACACGTTTCAAGCTAAACGtgttaataaactatttaacCAGTTCTTTACGATAGCAGTGTGACCTCAAGCATCCTTGGTGACTGGTGTAGTGTCTGCGCATGCACAGTCGCTTCCGTCGTGTCTGTATTATAACAGGATCAGACGCGCCGCTCAGTCTCTTCAGCACCGTTCCAGTATCCCGAGCACACGCGCAGCCGTCAGCCATGGGAAAGGAGAAGCTCCACATCAACATTGTGGTCATCGGCCATGTGGACTCTGGCAAATCCACTACCACCGGCCACCTCATCTACAAGTGTGGTGGGATTGACAAGCGAACGATCGAGAAGTTTGAGAAAGAGGCTGCAGAGATGGGAAAGGGCTCTTTCAAGTATGCCTGGGTTCTGGACAAGCttaaagcagaaagagagagaggaatcaCCATCGATATCTCCCTGTGGAAGTTTGAGACCAGCAAATACTATGTCACCATCATTGATGCTCCAGGACACAGGGACTTCATCAAAAACATGATCACCGGAACCTCACAGGCAGACTGTGCCGTTCTGATTGTGGCGGCAGGTGTCGGAGAGTTTGAGGCTGGCATCTCGAAGAACGGCCAGACCAGAGAGCATGCTCTTCTGGCCTACACATTGGGTGTGAAGCAGCTGATTGTGGGTGTCAACAAGATGGATTCCACTGAACCCAGTTACAGCCAGAAGCGTTATGAGGAAATAGTGAAGGAAGTCAGCACCTACATCAAGAAGATCGGCTATAATCCTGACACGGTGGCATTTGTGCCCATCTCTGGCTGGAATGGAGATAACATGCTCGAGGCCAGTCCTAATATGACTTGGTTCAAAGGTTGGAAGATTACCCGGAAAGAAGGGAACGCATCCGGGACCACCCTACTGGAGGCTCTGGATGCCATTCAGCCCCCAACACGTCCAACTGACAAACCCCTCCGCCTGCCTCTTCAGGACGTCTACAAGATTGGAGGAATTGGAACTGTTCCCGTGGGCCGTGTAGAGACTGGAATTTTGAAGCCAGGTATGGTGGTGACCTTTGCCCCTGTCAACGTGACAACTGAAGTCAAGTCAGTGGAGATGCATCACGAGGCTCTTTCAGAGGCCTTGCCCGGCGACAACGTTGGCTTTAATGTTAAGAACGTCTCCGTCAAGGACATCCGTCGTGGTAATGTCACCGGAGACAGCAAAAACGATCCACCTCAGGAGGCCGCCACCTTTACTGCTCAAGTGATCATCTTGAACCACCCAGGGCAGATCAGCGCTGGCTATGCCCCTGTTCTGGATTGCCACACTGCACATATCGCCTGCAAGTTTGCAGAGCTGAAGGAGAAGATTGATCGTCGATCTGGGAAGAAGCTTGAGGACAATCCCAAGAGCCTCAAATCAGGAGATGCTGCAATCGTCGATATGATCCCCGGGAAGCCCATGTGTGTGGAGAGCTTTTCAGAGTATCCTCCTCTGGGTCGTTTTGCTGTGCGTGACATGCGTCAAACCGTCGCAGTGGGAGTGATAAAAGGAGTGGAGAAAAAGACCCCGACGAGTGGAAAGATCACCAAATCTGCTCAGAAAGCCCAGAAGGCCAAATGAATGTTGTGTTTGACTGCCAACTCCAGAGACACATATGGAAAAGCAGAGGTCATCCAGCTCTTCTATCCTATTGGCTGCTTAGGTTCTATAGTCAGAGACTGCTTAATAGTTCCAATGCATCGCAAAAGtatcagaaggaaaaaaattactaaCAAAAGCAGTCCTTTAGATAACTCCAATTTGTATGTTGACTCGTACTGTAAGTCTTACATCCAAACCATTGAACttatttaatagtgtttttaatAGTTGTGCTTTTCTCTTCGATGATAGCTGTTGAAACcatatgtgatttttaaaatcttgacAGGTTTGACCTCTCCTGCTCTGGAGTGCAGTTTTAGCCTGGTTCTCATAATGTTGTCTTCGCTTGTTTTAGTGCTTGTTTGCAAAATACCATGTGTTCAGTATCCACTGGTGGTGAGCTACTTAAACGACACTATTTAGTAGACATTGAGAACCTTTATGTTTAGCTTTGCAGAACAATGAAAACCTAAAATGAAGCTCTTAATCAGCCCATCTCTGGGCTCATGCAATCTTTGGTGCACTGACAGCTTTATGTTTAGCACTTTGACTGGCGTAGGCTAACCCTGCACAAGCACTTGTTGACTTTAATTGGCATTAGCTACAGCAccttattataaaaaacaaaagctttcatGTCATATTAAAGAAGTCTCAAccataa

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142582 lncRNA downstream 129487 24714219 ~ 24716962 (-) True G96436
TU142578 lncRNA downstream 132991 24710744 ~ 24713458 (-) True G96435
TU142552 lncRNA downstream 170503 24631425 ~ 24675946 (-) False G96415
XM_043254579.1 mRNA downstream 814 24842270 ~ 24845635 (-) True cgasa
XM_043254555.1 mRNA downstream 174115 24667305 ~ 24672334 (-) False asrgl1
XM_043254554.1 mRNA downstream 174254 24667305 ~ 24672195 (-) True asrgl1
XM_043254739.1 mRNA downstream 226016 24603688 ~ 24620433 (-) True b3gat2
XM_043255913.1 mRNA downstream 405116 24430020 ~ 24441333 (-) True slc2a15a
XM_043255516.1 mRNA upstream 103 24851403 ~ 24856234 (-) False slc17a5
XM_043255515.1 mRNA upstream 103 24851403 ~ 24856234 (-) True slc17a5
XM_043255301.1 mRNA upstream 5919 24857219 ~ 24887322 (-) False rin2a
XM_043255303.1 mRNA upstream 5919 24857219 ~ 24887322 (-) False rin2a
XM_043255299.1 mRNA upstream 5919 24857219 ~ 24887322 (-) False rin2a
TU142467 other downstream 442805 24399123 ~ 24403644 (-) False fgf8a
TU142459 other downstream 501819 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 576000 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1850850 22994663 ~ 22995599 (-) True G96053
TU141977 other downstream 2023935 22821981 ~ 22822514 (-) False G96036

Expression Profile