RNA id: XM_043255516.1


Basic Information

Item Value
RNA id XM_043255516.1
length 1688
RNA type mRNA
GC content 0.49
exon number 12
gene id slc17a5
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24851403 ~ 24856234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCAGGGGTTCCGCATTCGGAGTGTGTTGTTATTGTGCTTCTGGTCAGGCGGCCGGAGAGCAGCCGCTCAAGATGATGGAGAATTCAGCGTCAGACTCAGAAACTGAAGATCATGTCCAGCCTTTATTACGCCGGAAAGACACCGGAGACCTTCAGAAAGCTCCTGCTTGCTGCTCCTCACGATACGGGCTGGCCTTCTTGTCCTGTTATGGCTTCTTTGTGGCATATGCCCTCAGGGTGAACCTCAGTGTGGCAATGGTGGACATGCTGAAAAACAGTTCCGGTGCCAACAGCAGTTCCTCCGTCTGCCCCCATCACAGCATCCCTGTGCCCAAACACAATCACACTGCCAGTGTGTATGACTGGGATTCAGAGACTCAGGGATGGATCCTGGGCTCTTTTTTCTATGGGTATATTCTTACTCAGATACCGGGTGGCTACTTAGCACGCAAGTATGGTGCCAAGTGGCTTTTTGGTATCGGCATCCTTTGCACTGTGATCTTCACCCTGCTGACTCCAGTAGCTGCTGATCTGGGAGCCGGTTATCTCATCGCTGTCAGGGTGTTGGAAGGCATTGGGGAGGGGGTGTCCTATCCTGCTATGCATGCGATGTGGGCATCATGGGCACCTCCTCTGGAGAGAAGTCGACTGCTCACTGTCTCTTACACAGGTGCTCAGCTGGGAACTGTGGTGGCTCTTCCTCTGTCTGGCCAGATATGTTTTTACCTAGACTGGACGTACGTCTTTTATATATTTGGAGCTGTCGGACTTCTTTGGTTTTTCCTTTGGGCTTGCTTTGTCAGTAACAGTCCCAGCTCACACAAAAGGATATCGGAGGCTGAGAAGGCTTACATAATggcatctttaaaaaatgaaTTGTCCCCAACCACAGATTACATCCCTTGGACATCAATCCTCAAATCTATGCCATTATGGGCCATAGTTGTGGCACACTTCTCTTACAACTGGACATTTTACACTCTGCTGACTCTCTTACCCACCTACATGAATGATATACTTGGATTCAGCATCCAGCAGAATGGGATGCTCTCGGCTCTGCCCTATCTTGGTTGTTGGTTGTTGGCTTTGCTGGGCGGACAGCTGGCAGATCTCCTGAGAGAGAGATATCTTATCCGCACTGTAATTGTGCGTAAGGCATTCACTATAGTAGGAATGGTGGGACCTGCCGTCTTCCTGGTGGCTGCTGGCTACACTGGATGTAACTTTGTCTTGGCTGTAGCCTTCctctccatctcctcctctCTTGGGGGCATTTCAGCTTCTGGATTTAACATCAACCACTTAGACATTGCTCCATCATATGCCGGCATATTGCTTGGGATCACAAACTCGTTTGCTACTATACCTGGCATGGTGGGCCCTGTAATAGCAAGATCTCTGACCAAATCtAACACCATTCCAGAGTGGCAAATTGTCTTCTACATCTCCGCGGCAATCAATATATTTGGAGCTGTTTTCTTTACAATATTTGGCAAGGGCACAGTCCAGCCTTGGGCTGTCCAGAGAATACACATCCAATGAAAGACGTCCAAAAGCTGTTACCACGTGCCACCAAATGAACCCGTGTCAATTACGTTGCATACTCTGTCAGTTGTCAAGATGCTACAATACATGCTCCATCACCTGTCAAATACTTGTGATCTAATAAAACGATTGCGCTCGTTTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142582 lncRNA downstream 134441 24714219 ~ 24716962 (-) True G96436
TU142578 lncRNA downstream 137945 24710744 ~ 24713458 (-) True G96435
TU142552 lncRNA downstream 175457 24631425 ~ 24675946 (-) False G96415
XM_043255511.1 mRNA downstream 103 24846449 ~ 24851300 (-) True eef1a1a
XM_043255512.1 mRNA downstream 165 24846449 ~ 24851238 (-) False eef1a1a
XM_043255513.1 mRNA downstream 186 24846449 ~ 24851217 (-) False eef1a1a
XM_043254579.1 mRNA downstream 5768 24842270 ~ 24845635 (-) True cgasa
XM_043254555.1 mRNA downstream 179069 24667305 ~ 24672334 (-) False asrgl1
XM_043255301.1 mRNA upstream 985 24857219 ~ 24887322 (-) False rin2a
XM_043255303.1 mRNA upstream 985 24857219 ~ 24887322 (-) False rin2a
XM_043255299.1 mRNA upstream 985 24857219 ~ 24887322 (-) False rin2a
XM_043255302.1 mRNA upstream 985 24857219 ~ 24887322 (-) True rin2a
XM_043255300.1 mRNA upstream 985 24857219 ~ 24887322 (-) False rin2a
TU142467 other downstream 447759 24399123 ~ 24403644 (-) False fgf8a
TU142459 other downstream 506773 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 580954 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1855804 22994663 ~ 22995599 (-) True G96053
TU141977 other downstream 2028889 22821981 ~ 22822514 (-) False G96036

Expression Profile