RNA id: XM_043255519.1


Basic Information

Item Value
RNA id XM_043255519.1
length 3207
RNA type mRNA
GC content 0.37
exon number 7
gene id si:ch211-67f13.7
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13930623 ~ 13936869 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGGACGTGTCGGTGATTTGCTCGCGCTCTGAATTCGTCTTAAGGGTTAAAAGGCATTTCTACGGTTTCTCGGCCGCCGCAGAGGAGCTGACGCTCGGAGAGACCTGCAAAAGCAACGGGGTCCTTGAGCCGCATGACGGCCTGCTCTTCACGTACGCGCTCACCGACTGCCAGGGAGAACGCCAGGGAACAGCTTGCGCACAGTCTGGTGGTGAGTACTACATCTCGGACACTGTTGCGCAAACTTATCCGGAGCAGATCTGGTGACTTTTTGATTCAGCTGATGGACGAGTCCTGGTCTTCTCCAGTCAGGTCAGCTGTGTACCTTCTGGGACAGCAGGTGAACGTGCAGGTCTCCACGAGACATCATAACCGAGGGGTCCAGCTTTTTATTAACAGCTGTTACGCGGCTGCTACAGTCAACACTTTGAGTCAAGCATCCAAACACGGCATCATAGACAATTATGGGTGTTTACGGGAAAGCCGGATGAATTCAGGTGCTTCAAGATTCAGGTTCTCTGGGGCAGAAAATGTTGTTCAGTTCTCCTTTGGTGCTTTTCAGTTTATTGAGGCTCCAGATGCCAAGGTTGCTCTCCATTGTGAGCTCTCCGTTTCTGCTGATGGCCCTAGTCCAACGCAGAAGTCTTGTTTTTACAGTCACACCGAAAAAAGATGGATCTCTGTATTTGGTCAAGATTCTGTCTGTCACTGCTGTGAATCCGTGTGTAACCAGACCAAAACCAAACGGATAACGAATGAAGGGTTTGTAAGCAGTGATCAAGTACTCTACTCTGACCCTGTAACTTCTCCTTTTTCTACTTTGCCTTCCTCAACTCTGGAATCCAATCCCATGGCTCATAGAAATGATGATGATATCTGGTTTGAAGACAAACTGACTAAAGAGCACCAGAGGTCGTACACCCACAAGGATTTTGTTGGCCCCGTTACCCTATCATCATCTGAAGAGGACCATGATAAGAGACCGCACACAGCAGAGTTCAtagaggaggaagagaaacaTGGGGATGTGGAGATTTTTATGGCTATCAGTACAAGTACTGTAGAATCTGAAAAGCTAGATATAGAACCCATGGAGCAGCTTGACGTTGCATCCTTGGATTGGTTTGAAGAAAGGAAAATGCAGAACATGACCTCGAGTTACTCACCCAAGAAGGTTCAGAGAGTGGAAGTTCTTCAGAAGGACAAAGGTTCCACAAATACGTCAGTTATAGTCAATAAAACCATAGAGGAACATCTTGATATAGATGAATCAAGAGTGGGAGAAGGGCAACTGGATGAGGTGTTTCTGCCATCCTTCATCTCagattctaaaaataaaaaggaaggaTTACGCGTCcctttattttcaacattggAGGAGAAACCAGAGTTTCAACTTGGATCTGATGAGCTGATAGAGCAGGGTGTTGTAAGAAATCTAGACCTTGCCCGAGACTCAGATGATGATTATTTTTCAGATGGaattgaataaaaagttaaaaacttgatttttttttttttttttttttttttccccagagtcACTAAAATATATCTAGGGCCAGCTGCATAAACTGCTTAGActtcttaaaagtttttttttttaagctttttaaaattagttgtaatttaaaaagtaagacTGTTTACGTCTTGGATACCTCTTCACAGTCTTAACTAGTGGTTATATTTATGCAACTGGCCTCTGATTAGTTTAGGTTGGAGAGACACTACAATTATGTTTTATCGCTAGAATGATTGTTTGAAATCTCGTATACAGTAATTTATACGATTGGGTTATGTAACGCTAATGAAATATATACTATTTGTTaaaaggtgtgttttttttttttttttttacacataaatcAAAGGGCCATGCAAAGCCTACTAATACTAGTATTGCAGGAAATGTTTTCTTGATTGATAATCCATGTATTGAGAgatattaaattacttttgctGCATGGTTTCCATGgtaatgcctttttttattctttatacaCAGCCTTTTCAACTCTTAAATCTAAACACCCTGTTAACTGTAGTTTTTAGGGAAACCTGTTGAATATCTAGTGTCATTATGGGTATTCATGTACATGTTTGGTCTTGCCCCCTGTGCTATGAAATTTCAAGACTTGTGGTTAAAATCAGCTTAACTATTATCATTTAGTGCACGTTTTCCTATTCACATCACATCAGTTGTGgatataaaaagacattttatattcTTCACCCACCCATAGGCCTTTTCATGTCTATGATAAACCCCACAGGACCGCAATGGTTGTAAATCTGAATGAACTGATTGTGTCTACTGATACTATCTCTGCAACAATTCTTTCTGATTATGTGTTTTCTGTTAACTTGAtggtactttaaaaaaaaaaaaaaaaatgaaaacaacatgtAAATGTTCAGACAGGATCTGTGAAACAACACTGGTGAAATACTtggcatgtattttatttttctagtgTTTTCTTAATGTAATAAGATGCAAATATGACATTCTGAATAGAACATTAGTAATCTTACGATCACTAATATGCCCGGTGGGTGATTTAAATCTCAATACAATgtagtttacaaaaaaaactttattgtgacatttcaacaataaatatattactgaaCAGTGTTAATTTACTGCAATGTCATCATTCCAACAAGTAAAAAAGTTGTTCACAATGCTAAATGGAAATAATCTCAATATTGATTTTTTCACAGGAGAAAATCAATAATGCGGCATGTAACAATATGTTATGCGTGACAAATTCTGAGTTTAAGACTATTTTTAGcaccaaaatatatatgtggCCAGCCACATGAACTGCTTAGACTTCAAAGTTTAAAAAGCTtccaatgctttttttttttttttttttttttttacttgaaatcagtaaatggaagactgttccaatttaaattgaaatgtagGACTGGTTACCTCTTGGCTAACTGGTGGCTGGCCAAACTAGATTTTAAGGCACAGTCTAGTGATTATATTTATGCAACTGAAACTACAATTATCTGTATTATAGAGCACTAAAATAgctgtttgaaatgttaaatgcaGTAATTTATAGGATTGGGTTATGTAAcacaatatatactatatatatatatatatatatatatatatatatatatatatatatatatatatacaaacagtataaaaaaatacatctttcaTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138574 lncRNA upstream 731 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA upstream 68358 13862051 ~ 13862660 (+) True G93649
TU138576 lncRNA upstream 170284 13759556 ~ 13760734 (+) False LOC122356417
TU138376 lncRNA upstream 582980 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 739223 13187585 ~ 13191795 (+) True G93485
TU138606 lncRNA downstream 8461 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 8461 13945330 ~ 13950605 (+) False G93659
TU138598 lncRNA downstream 9308 13946177 ~ 13950605 (+) False G93659
TU138603 lncRNA downstream 9308 13946177 ~ 13950605 (+) False G93659
TU138604 lncRNA downstream 9308 13946177 ~ 13950605 (+) False G93659
XM_043255520.1 mRNA upstream 1781 13918198 ~ 13929237 (+) False mfsd2aa
XM_043255521.1 mRNA upstream 1781 13918443 ~ 13929237 (+) True mfsd2aa
XM_043255076.1 mRNA upstream 72213 13852587 ~ 13858805 (+) True LOC122356401
XM_043255075.1 mRNA upstream 72213 13852594 ~ 13858805 (+) False LOC122356401
XM_043255899.1 mRNA upstream 129779 13798911 ~ 13801239 (+) True LOC122356827
XM_043255945.1 mRNA downstream 75380 14012249 ~ 14015870 (+) True LOC122356869
XM_043255298.1 mRNA downstream 248446 14185315 ~ 14188380 (+) False gmfb
XM_043255297.1 mRNA downstream 254313 14191182 ~ 14196252 (+) True cnih1
XM_043255289.1 mRNA downstream 263981 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA downstream 263981 14200850 ~ 14209385 (+) False LOC122356518
TU138522 other upstream 21415 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 714261 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1342165 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1355806 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2326794 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 417247 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1169589 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1318205 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1358980 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1927970 15864839 ~ 15870625 (+) False hps1

Expression Profile