RNA id: XM_043255520.1


Basic Information

Item Value
RNA id XM_043255520.1
length 2036
RNA type mRNA
GC content 0.46
exon number 14
gene id mfsd2aa
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13918198 ~ 13929237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATggcaagagagagaggagcCGAACAGTTCTCATCCGGTTTGTTACATACAGCCAAAACTGCGAATCAAGATGGAATCAAAATTGTTAAGCTTCCCCCACAGCAGGAGAGGAAAAGAGCTCTGACTGTGTGGAGCAAGGTGTGTTTTGCAATCGGAGGGGCTCCGTATCAGATCACAGCCACCGCCCTGGGCTTCTTTCTGCAAATGTTTTTGCTTGATGTGGCACTGTTGGATCCCCTCAATGCTTCTGTGATCCTGTTTGTGGGTCGAGCCTGGGATGCCGTGACTGATCCTACAGTTGGGTTTTTCGTAAGCAGAAGCCCATGGACACGGCACGGACGTATGATGCCCTGGATTCTGTTGTCGACCATACCAGCTGTGTTGTGTTATATCCTAATATGGGTAGTTCCACCTATAGAGCAGGGAAAGATGATGTGGTATCTGCTCTTCTACTGTCTCTTCCAGACTCTCCAGACATGCTTTCATGTGCCTTACTCCTCTCTGACCATGTTTATCAGCAACAAACAGCAGGAACGAGATTCAGCTACAGCGTACCgCATGACTGTAGAGGTGTTGGGTACAGTAATTGGCACTGGCGTTCAGGGGCAGATTGTAGGCATGGCCAACACCCCCTGCATTAACGACACATCAGTGACCAACAGCTACAACAACTCTGTGCATGACAATATTACTCAGGTCTTACTGGATAAAGTATTTAAAGAGAGGCGTGCATATGTGTTTGCATCTGTAGTCATAAGTTTGATCTACATCCTGTGTGCTGTTGTGCTGTTCTTAGGAGTGAGAGAGCAGGACAATCAGGGAGGTTTAAAAGCACAGAAGCGTGTGTCATTTCAGACCGGTTTGAGGCTGGTGATGGGTCATGGGCCATATGTTAAACTGGTGCTGGCTTTCCTATTCACTTCATTGGCCTTCATGCTGCTGGAGGGAAATTTTGCCGTGTTTATCAAGTACACGCTGGGATTCAGAGAGGATTTTCAGAACATCTTACTGGTCATCATGCTGTCTGCGGCTCTTACCATTCCCCTGTGGCAGTGGTTTCTCTGCAGGTTTGGCAAAAAGACTGCTGTGTACATTGGCATACCGtggGCAGTGCCATTCATGATCCTCGTGGTGTGTGTAAAGAGTAGTCTCCTCGTGTCCTATATTGTATCAGTCGCTGCTGGTGCTAGTGTGGCAGCGGCCTTCCTTCTGCCCTGGTCCATGCTTCCAGATGTTGTAGATGATTTTAAAGTCCAGAATCCCACGTCTCAAGGCCATGAAGCTATTTTCTACtctttctatgttttttttactaaattcgCCTCTGGTGTGTCGCTTGGCGTATCAACACTAGCATTAAGCTTTGCGGGTTATGTAACGAGGGGTTGTGTTCAGCCTGATTCTGTGCATCTGACGTTGAAGATTCTGGTGTCTGCTGCTCCTGTTTCACTTATAGCACTGGGGCTTCTTATCTTTAAAACCTATCCCATTAATGAAGAACGCAGGCAGTACAACAACAAACAGCTGCAGCTGCTACTGCGGAACGAAGAACAAGAGTCGGAGATGGAGGCCTTGAAGCCTGACCTCACAGCCTGAAGCATCAGCTCTGACCTACAGAGGGCGCCAAAATACACCTTTACCACTGCAATGAGGAAATCAGCTGGACTTTCCTCACTCAGTTGGTTAACCGGACCAATGAAGGATGACGAACCTTAAAGAAAATCTGCACTACTGTTATCAAAGCTACATATGTATACAACAAACTAACTACAATATCCTGCTTGCTGCTTTCAGTTACAATTACATCTCTCCCTGAGAGAGAACAAAGGGAGATTTTTATGATTAATATGAGGTTCAAATCTACCATCTACCAATATATCGTATTTTGTTGCATCTCTTTGTTCATTTGAGATGATGGATTCATATATTTTGGTTTCTGAATGTTGAGGATGTGTTGAGGTGCATTTGTTTGAGGACATGTTTTCTCATTGTGGTGAAGAATTGTTGGCTTGTTTTTGCACTTGGGGTGAAAATAT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138585 lncRNA upstream 55538 13862051 ~ 13862660 (+) True G93649
TU138576 lncRNA upstream 157464 13759556 ~ 13760734 (+) False LOC122356417
TU138376 lncRNA upstream 570160 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 726403 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 753885 13164037 ~ 13164313 (+) True G93474
TU138606 lncRNA downstream 16093 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 16093 13945330 ~ 13950605 (+) False G93659
TU138598 lncRNA downstream 16940 13946177 ~ 13950605 (+) False G93659
TU138603 lncRNA downstream 16940 13946177 ~ 13950605 (+) False G93659
TU138604 lncRNA downstream 16940 13946177 ~ 13950605 (+) False G93659
XM_043255076.1 mRNA upstream 59393 13852587 ~ 13858805 (+) True LOC122356401
XM_043255075.1 mRNA upstream 59393 13852594 ~ 13858805 (+) False LOC122356401
XM_043255899.1 mRNA upstream 116959 13798911 ~ 13801239 (+) True LOC122356827
XM_043255096.1 mRNA upstream 157776 13749135 ~ 13760422 (+) True LOC122356417
XM_043255085.1 mRNA upstream 191174 13721418 ~ 13727024 (+) True kcnk1b
XM_043255518.1 mRNA downstream 1386 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA downstream 1388 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA downstream 1781 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255945.1 mRNA downstream 83012 14012249 ~ 14015870 (+) True LOC122356869
XM_043255298.1 mRNA downstream 256078 14185315 ~ 14188380 (+) False gmfb
TU138522 other upstream 8595 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 701441 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1329345 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1342986 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2313346 11603697 ~ 11604852 (+) True G92977
XR_006252357.1 other downstream 424879 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1177221 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1325837 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1366612 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1935602 15864839 ~ 15870625 (+) False hps1

Expression Profile