RNA id: XM_043255558.1


Basic Information

Item Value
RNA id XM_043255558.1
length 2170
RNA type mRNA
GC content 0.42
exon number 8
gene id hif1an
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10886804 ~ 10893952 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTACAGTGTTTCTGTTTTCACGCTGCTTGTGTGACTGCGCGGGTCGCTCCCCTCGTCTGTTCGTGTTTCTGCTGGGTGTGTGAAAGGCCAGGAGCGGGTCTCGCTTCTCCTCTCTCAGCTGAACGGCTGTGCCGTCCAAACTCGTGTCACTTTATCGTGAAGTAACAGCAGTCCTCTGGAGCACTCGGAGGACATGGCAGCCGCGACTGTGGCTGAAGCAGACCCAGCAGAGACCGACGGAGCCGCCGCCGCCACCTTTACGGATCTACTCGACCCAGGCTGGAACGAATCGCAGCTTCGGCAATATAATTTTCCAACCCGACAGATACCTCGACTATCTCATACGGACCCGCGTGCGGAGGTCCTCATCAATAACGAGgAGCCTGTTGTATTAACAGATACCAGTTTAGTATATCCAGCTCTAAAATGGGACATACCCTACTTGCAAGAGAACATTGGAAATGGGGACTTCTCTGTTTACATAGCAGAAAATCACAAATTCTTGTATTATGACGAGAAGAAGATGACAAACTTTCAGGACTTTGTGCCCAAATCTCGTCGAATAGAGATGAAGTTTTCTGAGTTTGTGGACAAGATGCATCAGACAGAGGAACAAAGTGGAAAAGAAAGAGTGTACTTGCAACAAACTCTGAATGATACAGTAGGCCGAAAAATAGTGGTGGATTTCCTTGGATTCAATTGGAACTGGATTAACAAACAGCAAGCTAAACGAAACTGGGGACCGCTGACCTCAAATTTGCTGCTCATAGGCATGGAAGGCAATGTGACACCAGCACACTATGATGAGCAGCAGAATTTCTTTGCACAAATCAAAGGACATAAGAGATGCATCCTCTTTCCTCCTGATCAGTTTGACTGCCTATATCCTTACCCAGTTCATCATCCATGTGACAGACAGAGTCAGgTTGATTTTGAGAATCCAGATTATGACAAGTTTCCTAATTTCAAAAATGCTGTTGGATATGAGGCTGTTGTGGGACCAGGTGATGTCTTATACATCCCAATGTACTGGTGGCATCACATTGAGTCCCTGTTAAATGGAGGAGTGACCATTACAGTTAACTTCTGGTACAAGgGGGCACCTACTCCAAAGAGGATAGAGTACCCTTTGAAAGCTCATCAGAAGGTGGCCATAATGAGGAATATAGAGAAGATGTTGGGAGAGGCCTTGGGGAACCCCCATGAGGTCGGTCCATTGCTGAACATGATGATCAAGGGCAGATATGATCATGGACTGAGTTAATGGACTGAGCTGAACTCTCTTTAGTGTGCTGCTAAGACGgtctgtttatatgtatgtgtggaTATGAGTATACGCCTGTGTGTACATTCAGACTGTTGAAATGCCAGTGCATGGCAGTATAAAGACTTTTGCCTTTTGTCTGCTTTCAATTACTGGACCCATAATAGCTAGTTCTGTGTTGGTGTAAGGAGAAAACCACTGGTGAGAAATCTGAGTTGATCTCTCCTTAAAAAAAGTCCTTAAATTCATGTGTGTTCAGCATTACGTGCTAAAAAATAGACTAATGCATTAGCAGAGCCTGTAAAGCACTTTTACACCACCCAGAGCGCCTGTTGTCAGGTTTTGTCCCATGTTGGGACAAAGAAGGTGCCATATGTCATGATTAAACTCCTGTGGTTCAGAGTCCATGCAGTGAAACTGGCAGAGTGCCTCGAGCATATCCACAAAGGAGGATGATTTACAACTTGAAACCTACCATCGGCTCATTGACGGTTTAAAACTGTTGATACTATTAtgattcaatgttttttttgtttgtttgttcgtttgctTTTGAAATTGATTTCATGGGTTAACAGTATTTCTGTTATGATAGAGGTAATGCAGAATACAACGGTCAGCcacaatatgtttttaaaacaaaaaggattTATCTTTTTGTTGCTGACTCACTGAAttaaaatttgcatttgtttatatgcatttgtaatatttttttctttctttttttagctaTATTTACACTAAggtaaatgtttttagtttcttggtgttatattttacagtgttatgTTATATGGTACCATTTCTGTAAGGATTGTAATTCAGAACAAACTACACTTGCCAAGTGTTCGCTGTCTCCATGAACTGAaaggtaataaaatattttaaatggtttggTCTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0036138 peptidyl-histidine hydroxylation biological_process
GO:0042264 peptidyl-aspartic acid hydroxylation biological_process
GO:0042265 peptidyl-asparagine hydroxylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0036139 peptidyl-histidine dioxygenase activity molecular_function
GO:0036140 peptidyl-asparagine 3-dioxygenase activity molecular_function

KEGG:

id description
K18055 HIF1AN; hypoxia-inducible factor 1-alpha inhibitor (HIF hydroxylase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252378.1 lncRNA downstream 86940 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 86940 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 90835 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 99300 10784852 ~ 10787504 (-) True LOC122356898
TU137350 lncRNA downstream 102109 10784373 ~ 10784695 (-) True G92788
TU137407 lncRNA upstream 51252 10945204 ~ 10947731 (-) True G92829
TU137414 lncRNA upstream 82581 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 92350 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 94462 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 95330 10989282 ~ 10991734 (-) False G92841
XM_043256242.1 mRNA downstream 184707 10669026 ~ 10702097 (-) False cdhr1a
XM_043256243.1 mRNA downstream 184707 10670310 ~ 10702097 (-) False cdhr1a
XM_043256245.1 mRNA downstream 206982 10669026 ~ 10679822 (-) True cdhr1a
XM_043254505.1 mRNA downstream 227895 10651830 ~ 10658909 (-) False rgra
XM_043254506.1 mRNA downstream 227895 10651830 ~ 10658909 (-) True rgra
XM_043255947.1 mRNA upstream 4416 10898368 ~ 10905914 (-) True wnt8b
XM_043255949.1 mRNA upstream 12103 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA upstream 12103 10906055 ~ 10911827 (-) False scdb
XM_043254603.1 mRNA upstream 19098 10913050 ~ 10914756 (-) True trmt2b
XM_043255464.1 mRNA upstream 57499 10951451 ~ 10955143 (-) True tysnd1
TU136940 other downstream 696294 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1771253 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2838903 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3751662 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 3755589 7131145 ~ 7131215 (-) True trnag-gcc_67
TU137394 other upstream 30992 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 306994 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 632228 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 877476 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1535245 12429197 ~ 12430778 (-) False tmem234

Expression Profile