RNA id: XM_043255574.1


Basic Information

Item Value
RNA id XM_043255574.1
length 4233
RNA type mRNA
GC content 0.43
exon number 12
gene id ldb1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10313414 ~ 10333604 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGGGCTTCAAAGCCAATCTGTGgctctgaaaacaaaaagccatTTCCTACAGCAGCGCAAAGAAACCCTTCAGTGTGAAATTATTCTCAGTGGAGTGGCTCTCTTTGTTCTTTGCTCGCTGTGTTTTTGGACCGCAGCTCCTCTCGGCTGAAGAAAGTAAATCAGATGAGTTTATTAAAGGCATTTTAAGAGTAATTAATAGCGCTCGTCTGATTTTTACATCCGACCGGCGGGTCGTTTTTGCGCTTGTGGGATTGAGAGTGTTGTCTCTGTGTCAGCATATTGATTTTGAGTGACAGGTGACATGTAATAACAGCGGTGCGATGAAAGCAGTGCCCTGTTCCCTAGATACCCTGGATGAGAGTCTGTGAAATCAAGAGGTTGCTGAGTGCTCTCTCACTCCCCCCTCTCTGGAGTTGTCAGGCGGCTTTGACAGGGGACGTAAAGGACCAGTGGTGTGTGAGATTCGGTAGTTAGAAGCACAGCCCACTGGAGGGAGAGGCTTTGAGGAGGGAGAGCGAGGGAGGCGTCGGATCGATCGCGGGACTGACACGGAGCGGGTGCCATGTGGACAGGGACCTCTGTCTGTCCTTTGGGACTATGAGAAAGCCAATGAGTCTTTAAAACAGGGAGGGCTGAGGATGTGAATGTGCACTTAGACAAAGACGAATGCTGAGCTTTTTATACTTGCAAAGTGAATAAGTTCTTTGGTGTATTGTTTGGTGTGAGCGCTCAGCCAGTTTTAGATACTGATTCCATGAAGAAATTAGACACCTTGGCATATTCTAAGGAGGCTGTTTCTCCGATGTCCCAGTACTCCAGAAGAAGCCCATGCTAACAGTGCGTGGACTGAACAACACCATTTCATTAAGAGCAGTGCCAAACATGTGAGAAGATGTCTGTTGGAGGTTGTGCTTGCCCAGGCTGTTCGTCCAAGTCGTTCAAGCTGTACTCCCCCAAGGAGCCCCCCAACGGTAGTGCCTTCCCTCCATTTCACCCAGGCGCAATGCTGGATAGAGATGTGGGTCCGACGCCGATGTATCCCCCCTCTTACATGGAGCCTGGAATAGGGAGGCACACACCGTATGGAAATCAAACAGACTACAGAATATTTGAGCTCAACAAAAGACTACAGAATTGGACAGagcAGGACTGTGACAATTTGTGGTGGGATGCTTTCACTACAGAGTTTTTCGAGGACGATGCAATGCTGACGATCACTTTCTGTCTGGAAGATGGGCCCAAACGATATACTATTGGTAGGACGTTGATCCCTCGATACTTCAGGAGTATTTTTGAGGGTGGGGCCACTGAACTCTTCTATGTGCTGAAACATCCCAAGGAGTCTTTCCACAATAACTTTGTGTCACTTGACTGCGATCAATGCACCATGGTTACACAGAACGGCAAACCCATGTTCACACAGGTGTGTGTGGAGGGCAGACTGTACCTCGAGTTTATGTTTGATGACATGATGCGTATAAAGACATGGCATTTCAGCATCAGACAACACAGAGAAGTCGTGCCAAGGAGCATCCTGGCAATGCATGCCCAAGACCCCCAAATGCTTGACCAGCTatcaaaaaacatcacaagatGTGGCTTATCTAACTCTACGCTGAACTACCTCCGACTTTGTGTAATCCTGGAGCCCATGCAGGAGCTGATGTCCAGACACAAGACGTACAGTCTCAGCCCACGAGACTGCCTCAAAACCTGTCTGTTTCAGAAATGGCAGCGAATGGTGGCCCCACCAGCCGAGCCAGCGAGACAAGCCCCCAACAAGCGGAGGAAACGAAAAATGTCCGGCGGCAGCACCATGAGTTCCGGAGGgggcaacaacaacaataacagcaacagtaaaaagaaaagtcCAGCCAGCAGTTTTGCGCTCTCCAGCCAGGTACCTGATGTGATGGTGGTGGGAGAGCCCACTCTGATGGGAGGGGAGTTCGGGGACGAGGATGAGCGGCTCATCACACGGCTGGAGAACACACAGTTTGATGCGGCCAATGGCATCGACGACGAGGACAGTTTCAACAGTTCCCCCGCCCTGGGCACCAACAGCCCCTGGAACAGCAAAGCTCCCTCCAGCCAGGAGAGCAAAAATGACAACCCCACCTCACAGTCATCGCAGTAGAAGTGTTAGGGGCTAGCGAAAGGCTCGAGGACCCCCTCGCTCGCAAGACTTCTGCCTTGATGAGTCCACAATTGGCCACGCGAGAAATTGGctctcctcatcctcctcctcctctgtcgCCGTCAGACATTCCGTTTTGTTGATTCTTTGGTTTCTTTTGAGAGTCGTTTTTCAACGCCGTCCGTTTCTGTGTCTCGATCAGGCTTAGCGATCAGGCTGTGGGTTATTGTTCCAACCTCGGGTCTCTCTGTGCGTGCTGTGCTTTGACACGCATGGCCGTTTCTGTTGTGCTCACTTGACAGGAAAGGATCACTTTTTATCTGACCGTTTAGTGATATGACCATTGTGTGCACCTCAGATTCAAACCCAAAgctccatttttaaaaactcaattatttgttttgtaggACCTGGTTGGAACAAAAACCTGTACAGTTCCGGAGCTTGAGGACCGGAGTTGAGAACCACTACGTAAAGTCCTTTAAGTAAAGCTAAATAAAGTGTAAAGCATCGAGGTTCTTGAGTTTGGTCATGCCCGAAATGGTCACTGAGAGCTTGCCTGACCATTACGCCAGACTCAAAAGAagtgtttgatttttgtttttgtttttttgttttttaaattgtttgcattctgtttaatttcttgttcttttttttttttcttttttaatttttataacgatttctaaagtgaaaaaataagcaagcaaacaaaaactctAAATATCCTTTGCACTCTTGTCACTGTATTTTGGatctatttttcttaaaaaatgattatgatgaattttgttcttattaaaacaaaaaaatcgaTAATCTTTAACTGGAAAACGCTGTCAATCtcaatgtaaaataacaaattttgtATCGTTACTGTTATCAATATTATTGTAAGTAGATGCTACTTTGCTCTAAGCTTTACACCtatctgtctttgttttaatcATCTTTGAAAATGAGATTACATGATCATAGCATGTTTGTCTGGGAACTGCATGTGTCAGACATTAGCTATCGCAGCTGCAACAGTCTCATTGTTCGCAGGATCTAAATCCTACACTGTTAGTACAACGGCTGGTGGCACATTTTGTCCTAAGACCGTAGCTATGAACATTTTGTTTCCTGGAGATTTTTTGCCTATTGAAAAGAACAAGCCGATCACACCAATTAGTTTGCTTTGAAAGTCTAGGGAAAACATCAAATTAGTATgccagccttttttttttttttttttttattttaatttttttttttttacccgatGCTACAGACCAAGGAGCAAGATCCTTTAATCgacacatttatataatgttttagtttttctttttcatcatttcgtttgtgtatttgtgattGTATATTTAAGATTGTAGCCAAGTTCTGTATAAGTGTCATTCTATTTACTCTTCTTAGGACCCCTGTGCCCCCTTCACCCCTTAATATGTCAAAAGTAAAGCTGAACCTCTCATTTCAAATCGTTTCTAGATGCGTTAAAGGTACTACTACCTTTCACACAAGAAGGTAGATTATAGTTTTTAAGTCAatgtacaatgtatttatttttttaaagtctttgcCATTGCATTATATTGAGACGATACATGTTGCTGTGTATTTGATGTTGCCTTTGTACATTATTTcacttatgtttttgtttttttccttaacCTAAGAGGATATACAATCTCTTGAATTAATCATTAagatttcttattaaaatttggataattaaaacataatcgGATCAATAATTCCAAGAAGCCCCTTTGAGATTATTAGGTTTTAAAACACCAGAGGGCACTCCATTGTAAGGCTTCCGCCGACTTACGAAAATGTTCTAAgactatatttaaatgtaaccaTTATAAGGCATACAAATCcgaaatttatttttttccaatgtCATTTGTGAAATATACAGTGTTGTTTCCGGTTCATTTCTCAAATCGGCCATGAAGCAGGTGTgctcttttctgtgttttcagagcACCTTTGTTTGTGGTTGTTTTACAGATATATTTTTGCCTCTTGTCTGCCATTGACAGTTGATTATATGGtaccaataaaacacattttcacaagCTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0030274 LIM domain binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K15617 LDB1; LIM domain-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136995 lncRNA upstream 4155 10309237 ~ 10309776 (+) True G92563
TU136969 lncRNA upstream 37753 10275584 ~ 10276178 (+) True G92552
TU136950 lncRNA upstream 64206 10235916 ~ 10249725 (+) True LOC122356813
TU136954 lncRNA upstream 64206 10248688 ~ 10249725 (+) False LOC122356813
TU136909 lncRNA upstream 148275 10164559 ~ 10165656 (+) True G92524
TU137060 lncRNA downstream 82841 10416445 ~ 10416695 (+) False ly6pge
TU137184 lncRNA downstream 308952 10642556 ~ 10645237 (+) True G92671
TU137194 lncRNA downstream 323904 10657508 ~ 10702103 (+) True G92675
XR_006252420.1 lncRNA downstream 419629 10753233 ~ 10763691 (+) True LOC122357062
TU137260 lncRNA downstream 487338 10820942 ~ 10947919 (+) True G92729
XM_043254689.1 mRNA upstream 16217 10294206 ~ 10297714 (+) True LOC122356189
XM_043255884.1 mRNA upstream 64206 10205113 ~ 10249725 (+) False LOC122356813
XM_043255819.1 mRNA upstream 246759 10051087 ~ 10067172 (+) True fancl
XM_043255010.1 mRNA upstream 646093 9615027 ~ 9667838 (+) True bcl11aa
XM_043256233.1 mRNA upstream 745404 9567617 ~ 9568527 (+) True neurog3
XM_043255991.1 mRNA downstream 1071 10334675 ~ 10343979 (+) False prom2
XM_043255990.1 mRNA downstream 1072 10334676 ~ 10343979 (+) True prom2
XM_043255992.1 mRNA downstream 1073 10334677 ~ 10343979 (+) False prom2
XM_043255561.1 mRNA downstream 16184 10349788 ~ 10354314 (+) True nsmce4a
XM_043256294.1 mRNA downstream 22959 10356563 ~ 10385602 (+) False LOC122357091
TU136946 other upstream 64206 10235916 ~ 10249725 (+) False LOC122356813
TU136388 other upstream 1149817 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 1573842 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 1630879 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 2003107 8306486 ~ 8310824 (+) True G91833
XR_006252423.1 other downstream 85218 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 631269 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 879922 11213526 ~ 11215087 (+) False G92772
TU137330 other downstream 881888 11215492 ~ 11218175 (+) True G92772
TU137640 other downstream 1238056 11571660 ~ 11577859 (+) False lrrc9

Expression Profile