RNA id: XM_043255615.1


Basic Information

Item Value
RNA id XM_043255615.1
length 2056
RNA type mRNA
GC content 0.43
exon number 7
gene id slc39a8
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6174314 ~ 6179659 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATAGCTGCTCGGTGAAGTCGTTCGCATCGAAGGAAAGTACCATGGAggaaagttttgtttacagtgtgtTGCGCTTCTACGGCGAAAGCGGGTCGCTGTCCACGGAAAACCTGGGAAACTTTCTGCGCCTCGTCGCCAGCCGCCGCGCGCCGTCGGTGGACGCCGCCTCCAACCCGCTGAAGAACACGGAGtGCTCTTCGTTGTCAGAGCTGCTGTCAGCCTTTGGACTCAGCAATGCTTCTGCTGTCAGTCTCAGTGATCTGGAGATGATGTGTCCAGCTATTCTCAATCAGGTCCTGCTCCCTGCCTGCCCCTTCACCTCCCCCTCAAACCAAAATGATTCTTCCCTGTTACCTGATCACAAAATTTGGGGTTATGGTTTCCTGGCCGTGACCGTGATAAACTTGGCTGCTCTGCTGGGGTTATTTCTGGTGCCTTTgactaaaaaaacatattttccaaAAGTCTTGACGTATTTCATCGCATTGGCCATTGGGACACTGTTTTCAAACGCTGTACTGCAACTTATTCCAGAGGCCCTTGGCTTGGATCCTAAAGATGATAACTATGTGCTAAATGTAGTCGGGATTTTTGGTGGATTTTACATTCTGTTCTTCACCGAACGGGTTTTAAAGATGGTACTGAAAGCGGACGCAGAGCTGGGACACAGTCATTTCCCTCCCCTGCAGTCAGCTGATGTCACCATCACCACCTTCAGCAACGACGCTGTCATAAACAACATCAGCGGTGACATCATCGCAAACAACACCAGTTGTGAAATGAACTCTATCAACGAAAAGCCCAGCCACCCAAGTGAGAGTCCAGCCGGCGATCAGAATGCATGCATGCTCTTAACATGTCGCTGGCTGAAAGGGAAGCGAATGTCTAATATAAAGACTGTGGCGTGGATGATCACGGTCAGTGACGCTGTGCATAACTTCATCGACGGTCTGGCCATCGGAGCGTCCTTCACGCTGTCTCTACTCACCGGCTTCAGCACCTCTATTGCCATCTTCTGTGAAGAGTTTCCTCACGAGCTGGTTCCCAGAGATGAACAGTATCATGGCTACACAAACCAAAGGTTATCGAGGAAAGCTTGCGTTCTTCCTGATCCAAAATGCTGGCCTGCTCACCGGATTCACTGTAATCTTGCTTATTACCCTGTTTGCTGGAGATATCAATCTAGGGTAAAAGGAAAGAAGCAAGAAACAAGGAACAATTGTTTTCAGTGCCAGAAACTAAAAACCTGAGACAGACTCTGCTGGCTTTTCTTTTTGTACAGTATGTCAGACTTGTACTGTATCTGCTGTTGGGAAAAACAACACAATCGTACGGCCCTGGAGTACatgatttggttttttttatagtttgatgAGATTTTGTTGTACTGATGTGAGTGTTGGTGTCTGATGTGAACAGGCAACAATACAGCGCTGTGTGAGGAGGGATTCCTCAGTGGCAGTGGCAGCCTAGCACTGAGTCTCTGAGCAGCTTTGTCATCCAAATGTCGATTTTTCTGAAGCACACTCGAGTGAGACTGTCGTGTTCACACGGTGTCTAACCAAAGGAAATGAAAGTAAAGATAATTGCTGTGTGCTTTTGTGCGTCTCTTCGACAGCCGGGTTTCATTAGGCCGGGGACGTTTTTGAATTTAAACCTTTCTTTCCTTTACATTAATTAAGAACAAGGTCTAGGATACAGAATGTTtaccaaatgtttgttttttttaaataattaaaaaacaaaagtgtgtgtgttacatgtacatgtatgtatgtgtataaaattatacaaatatatatgaattgaATTCAatatgtttctcctaaaatataacattaaacaaaaaagtttaccATTTTACAGAAAgtatgttttagatttttttttaaaataattgttctaTTAGAATAAGTAGAAGCAAATAAGCTCTCTATaaggttttgtattttatatttaatgcatttgtgtagGAACATGATATATTCAATTATGCCATAAGAAGTGCTATCATTTTTATTGAAGaagtaataaaatgtcatttaatgcCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135152 lncRNA upstream 172252 5998442 ~ 6002062 (+) True G91250
TU135142 lncRNA upstream 187335 5985544 ~ 5986979 (+) False commd8
TU135036 lncRNA upstream 217716 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 221797 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 246181 5927834 ~ 5928133 (+) True G91180
TU135249 lncRNA downstream 74944 6254603 ~ 6261915 (+) True akt3a
TU135252 lncRNA downstream 74944 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA downstream 99900 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 190551 6370210 ~ 6370528 (+) True G91324
TU135295 lncRNA downstream 273085 6452744 ~ 6453076 (+) True G91343
XM_043255612.1 mRNA upstream 600 6166509 ~ 6173714 (+) True manba
XM_043255613.1 mRNA upstream 1738 6166502 ~ 6172576 (+) False manba
XM_043255993.1 mRNA upstream 8645 6160378 ~ 6165669 (+) True ube2d3
XM_043255994.1 mRNA upstream 8645 6160380 ~ 6165669 (+) False ube2d3
XM_043256103.1 mRNA upstream 15001 6152743 ~ 6159313 (+) False zmp:0000000662
XM_043256228.1 mRNA downstream 995 6180654 ~ 6183028 (+) True nat8
XM_043255486.1 mRNA downstream 4915 6184574 ~ 6210258 (+) False dctn1b
XM_043255480.1 mRNA downstream 7500 6187159 ~ 6210258 (+) True dctn1b
XM_043255481.1 mRNA downstream 7500 6187159 ~ 6210258 (+) False dctn1b
XM_043255482.1 mRNA downstream 7500 6187159 ~ 6210258 (+) False dctn1b
TU134595 other upstream 1176418 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1930273 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1930273 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1930273 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2102415 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 951767 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1656531 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1679039 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2126827 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2486609 8666268 ~ 8683052 (+) False pcnx2

Expression Profile