RNA id: XR_006252357.1


Basic Information

Item Value
RNA id XR_006252357.1
length 2280
RNA type transcript
GC content 0.50
exon number 15
gene id frmd6
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14354115 ~ 14369557 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTACCAACGTCAGCTGCAGAGGGGTGGTCTTTTGTCCACGCTTGGTTAAATGTAAACACCTCGACCGCACAAAGATAGCACAGCCGCTGCGTTGCTGCTAGAAATTGAGGGAAAGAGGCGCCGTGAAGCAGACGCGTTTCCGGTCGATTCCTTTGGAGTTCGTCACCCCTCCTACAGACGTTTGGGAAATTCCCTCCACATGTATAGTGATTTGTGAGAGTTGGGGAGCCCGATGGGGTTGAGTTCGCAGCTCGGGATTATGTGCTAGGCTGGCGAGCGCGGTAGAGGAATCAAAGCGAGAGTTACATGGAAGAAGGTGTGTTTGGGGATACTTTGGGAATACGCGGCATTACCGTCACCGAGAAGaaTCGGGCGCTGGGgctgcagtgtgtttgtgtggtgtgATTGTGTGTTGGTCCAAGAGAAACTGCTGGTTTGAAACAGTTAGGTTAAATTTCTCATATCATAGGGGcctgaaagtgtgtgtatgagttATCTGATCCCATCGTGACTGGGAGGTACTCGGGGGTGGAGCTCCAGTGAGGGGCACAAATCTACAGGCTGCAGCCTCTCAAACATGAGCAAACTGACCTTCCACAATAACAAGACGATGCAGGACCGccggtgtgtgtgcgtgtttctcCCGAATGATGAAACTCTCAACGTTATAGTCAGTgTTAAGACTGTGTGTCAGGAGTTGTTGGTGCAGGTCTGTGATCTGCTCAGGTTGAAGGACTGTCACCTGTTCGGTCTCAGTGTTATTCAGAACAATGAACACATATACATGGAACTGGGACAGAAACTGTCTAAATATTGTCCAAAAGAGTGGAAACGGGAAGCCAGCAAGGGAATTGACCAGTTTGGACCTCCTATGATTGTTCACTTCCGAGCACAGTATTATGTTGAAAATGGCAGACTTATCAGCGATCGCATGGCACGGTATTATTACTATTGGCATTTGCGGAAGCAGGTACTGCAGTCTCAGTGCATCCAGAGAGAAGAGGCTTATTTCCTTATGGCTGCATTTGCGCTGCAGGCTGACCTGGGAAACTTCAAACGGAACAAACACTTTGGTGCCTATTTCCATCCGGAAGCGTATTTTCCCTCCTGGGTAATAGCGAAGAGAGGATGTGACTATATTCTCCGTCATATCCCAAACATGCACAAAGAGCAGTTTGCTCTTACAGCATCAGAGGCCCAGctgaaatatataaaggaaGCAGCACTGTTGGATGACGTGACTGTCCATTATTACCGCCTCTACAAGGATAAGAAAGAGCTGGATGCTTCTTTAACTCTGGGACTGACCTTACGTGGGATTCAGATTTTTCAGaatgtgGGAACTGTCAGGCAACTCTTGTATGATTTTCCCTGGACCAATGTGGGGAAACTGGTGTTTGTGGGGAAGAGGTTTGAGATTCTTCCTGATGGTTTACCTTCAGCCAGGAAGCTCATCTACTACACAGGCTGTCCCCTGCGCTCACGACACCTCCTGCAGCTGCTCAGCAACAGCCACAGATTGTATATGAACCTACAGCCAGTGCTAAAACAGGTTCGACGACTGGAGGAAAATGAAGaAAAGAAGCAGTATAGGGAGTCATATATCAGCGATGCTCTGGAGGCAGACGTGGATCATTTAGAGCAGCGTTCACGTGCCAGCGGCAGCAGTGCAGGCAGCACGTCACGACCCAATCCCTTTTCACGACACTCCACCACGAGTCATGGCAGCTCCCGCACATCCGGCGTCGATACTGACAGTTTCCGAACACCTACCAACACACCCCACCGACCACTGAGAACACACTCGTCTTCCAACACCAGCCATGCCAGCACACACACGTCTGGCATCGAGAGCAGCAGCAAGGAGCACTGCCTGGATGAGGATGAGATTGAGATGTTGGTTGATGATCCGAAAAGTTGTGAAGATCTTCACGATTTAGATCTCAACCAGGAACTGTGTATTCACATCACAGAGGACATGCTGTCAGCACAGAACAACGGATGCTCCGGGTTAGTGGTGAAGGAAGTGAGTTCGTCCACATCCAGCTCATCAGAAACGATTGTGAGAATGAGGGGCCAGAGCATTGAATGTCTTCCCCAGTGCTGGTAACCCCACTTCCTCTTAACAGTATTTGTTTAGGGCAGCCTTACCCTACACCCAACAGCACTGTCGTTTCTCATCTGTGAATTCATACGGCGATGGGCAGGAAGGGCCAGAGCTCCACAGACCGCCACAGCCAATCACTGGATGATGTTCGACTTTTCCAGAGGAACTGTC

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138760 lncRNA upstream 32032 14318780 ~ 14322084 (+) True G93766
TU138749 lncRNA upstream 45734 14306996 ~ 14308382 (+) True G93755
TU138738 lncRNA upstream 69339 14282769 ~ 14284777 (+) True G93745
TU138733 lncRNA upstream 77241 14276615 ~ 14276875 (+) True G93743
TU138722 lncRNA upstream 104594 14248765 ~ 14249522 (+) True G93736
TU138820 lncRNA downstream 164887 14532022 ~ 14532317 (+) True G93818
TU138847 lncRNA downstream 196256 14563391 ~ 14567101 (+) True G93834
TU138848 lncRNA downstream 201190 14568325 ~ 14568913 (+) True G93835
TU138849 lncRNA downstream 202020 14569155 ~ 14569697 (+) True G93836
TU138852 lncRNA downstream 208245 14575380 ~ 14576330 (+) True G93839
XM_043256249.1 mRNA upstream 9255 14339891 ~ 14344861 (+) True tmx1
XM_043256281.1 mRNA upstream 77677 14268377 ~ 14276439 (+) True atl1
XM_043256285.1 mRNA upstream 118083 14232374 ~ 14236033 (+) True dmac2l
XM_043255289.1 mRNA upstream 144731 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA upstream 144731 14200850 ~ 14209385 (+) False LOC122356518
XM_043255317.1 mRNA downstream 10459 14377594 ~ 14393187 (+) True esr2b
XM_043255318.1 mRNA downstream 10459 14377594 ~ 14393187 (+) False esr2b
XM_043255316.1 mRNA downstream 10459 14377594 ~ 14393187 (+) False esr2b
XM_043256342.1 mRNA downstream 117931 14485066 ~ 14487500 (+) True gphb5
XM_043256032.1 mRNA downstream 253030 14620165 ~ 14630849 (+) True phf3
TU138522 other upstream 444513 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1137359 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1765263 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1778904 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2749264 11603697 ~ 11604852 (+) True G92977
XR_006252421.1 other downstream 739323 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 887939 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 928714 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1497704 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1497704 15864839 ~ 15869803 (+) False hps1

Expression Profile