RNA id: XM_043255627.1


Basic Information

Item Value
RNA id XM_043255627.1
length 6782
RNA type mRNA
GC content 0.38
exon number 6
gene id rgs17
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8683957 ~ 8701125 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTCCGCAGCTCGCCTCGCGCTCCGTGAGCTGACAGCTCCGCCGCGCATGCGCAGGGCGTCTCCACTGGCTCGCTCGGTGCTGAAGTTGGGCGGATGGACGGAAAACACCGCTGATGGAGATAAAACGGCAGCATGCAATCTCAACGCGTGATACCCCCGATATCCGCATAAACACGTGTAACGACACCCTTTTAGAAGACTGACATCTAGAACGAAAGGGATGTCTTATCCTGGATCATTTAGCCCTTGACTCAAGGAAAGGGTGTGCCTGCAAATACCAGGTGTTTGAAACCTACCTCCACCCACCTCCTGCGTTCTCCATCAGGCATGATAAGAGAAGATACAAGAGGCCACGTTTTGTTTTCCAGCACTCTGCCCGTCTCAACGTTTGACATTACAGTCATGATTTTCTTACCTGATCTTCGGATGGATTGCTGCTAATTTGCATGCCTCAGAGTGTGAGCGGAGTTGAAATGAGGAAAAGGCAGCAGGGACGCATTGAAGGACCCCCACAGGCGCCTGGTCACCCGAGGCCCAACACCTGCTGTCTGTGTTGGTGTGGATGCTGCAAATGCCTCTGGAATGAAGACAGAAGGGAACGTTCAGAGAGACAAACATGTACAAAGATGGATAGCATAGAAGCAACAGAGGAACAGCATCCCACACTGGATGAGGTGATTGCCTGGTCACGGAGCTTTGAGATGATGATGCGCTCTCCAGAGGGGAGGGATGTTTTCCGGGAGTTCTTGCGGTCTGAGTACAGCGAAGAAAACCTGATGTTCTGGATCGCCTGTGAGGAGCTAAAGAAAGAAACCAACCCATCAGCTATCGATGAAAAAGCCAGGATCATTTATGAAGACTACGTCTCCATTCTTTCGCCAAAAGAGGTCAGCTTGGATTCACGGGTGAGGGAAGGCATCAACCAAAGCCTGGCAGAACCCAGCAGTACGATGTATGAGGATGCCCAGCTTCAGATCTACACCCTCATGCACAGAGACTCCTTCCCCCGATTTCTCAACTCATCTGTTTACAGGGATCTCCTTAACAGCAAGAGGGCCTGCTTAGACACCTAGGTTTCGGCAAGAACATTTGTGACAAAAAAGCCCCAAGGTGCCACTTTCAAAAGGTGTGATGTTTCTTATTTCAAGAGTGAGTAGTTAAGCAATTCTGAGCATCCACTAGTGATCCTGAAGTTCAGTTCTGTTTAAGTGCCAATACGAGCTGCTCAGGCAACTGTGACACaggaaaaaaacgaaacaaaaaacgTGTAGGAAATCTGACAGATCCATACTTCCTACTTTCAACTCACTTGTCTTTTTCATTCACCTGTTTGGTCTCTCAAAtctcctctctcttcctgtttACCTCAcctgttctctttctctctgtgttcttTCTACCTGATCCTTTTCATCGTTTATGCCTCGCATATCTGAGGACAGCtgaataatgttattattactattattaaacttttttttttttttttttttcatttttaaagaaaatcaaaaaacaacGGATAAGCGGTAGATGTTAAGCTAGAAAACCTTTGCATGATACAAGGTTATGGAATTTACTCCAGTTTGACATTTAAGCCCCggactacaatttttttttttttttttttggtttttgtttggttttttaaataaaaaaaaaatgttttttaatgctgtCATGGGGAGAGAACATTGTAAAGCTCTCGTAAGCGAAGGGAAAATTAGCTGTGCCAATTGTTTTGTAAAAGAGACGCTGGGAAGCGTAATCGCCGTCTTGCCGTCCAAACTCTTTCTTTGCGTGTCGACAGTTCTTTAACTGGGAAACATAAGGGCTAGCTAGTGTTGTGATTGGGCAGCTAAATGAATCATgaacatttctttctctctgcaaAAATCACAATGCCTCGACACTGAGTAAGGGCACAAAAGCTGCTGATGTTGGTGACGCCACAGTTTATTTTGTGAGTCCTCCTAGCCCCTCCCAGTCCGTTACTAACAGAGAGAAGCACAGGTACTGTATGTCATGGGCTGTAAGCTTCGCTGGATTGAGCGAGAATTGCTTGAAAATCACTCACCTACATTCTGGAGGTTCTTAAAAGAGCTTCGAATTGTCTTACacattaaagaaatgtattttattaaacaaaagtgTAGTTAAACAACACTATGCCTTGTTTTTGAGAGTTACACTaggtctatttaaaataactgtgatCGCCGTGAGACCTGCTCGATGTGGTGGCGCGACGGAGTCGGATCCATCAGGGAAACTTTTCTCTGCCTCCGAGTCCGAATGTGCGTTTTTGCCTCAAACGAGGAGCGGTCATTTTCACAGCTCGGAAAACCGCAGGTTAtcgagaaaaaaacaaacaaacaaacaaacaaaaaaaagcaagtcagtcttttttataaaacttttttccaGCATGCGTTTCTTCTGTTGTGTCATGTACACATTGCAATACTCAACCCAGATACGGTGCGAACCTCTCCGGAAAGCGTCACGATCATCAAGATGATACTTACAAAAGATGATTTTCCTTTCGAGGTTTAGACGTGTGTCCCTCAAGAACGTGTGTCGTTGCATTCAGACTTGAATGTTGCTGTTCAATTTTCTAGACATTTATGTGCTATTGCAGTCGCAGCAGCCAGTGCATGAGAACACGATATTTAAAATACCGGTGTGTTAAACCACTCTCTCACCTTTTAGCGGAGAAATTCAAGAGTGAATTGCATTTAAACCGACGTTTTTTGGTCACCACACCCAACCTCAAAGTGTCACTTTCCCTGAACTCTTGTGCCAACGAATGAACGTTTGTTAAGTAAATCACGATTAAGTGTGTTGTTGTTGGGTTTTCTTACTGGTGCTCTGAGAGTTAAGTGCCATTCACTCTGCAGGTTTACCACATTAAAATGAAGACCTTTGTCACTTTACCGAGTGCATAGATATCCTTCTTtgaagtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcatcgGCCAATGTGAGTAGGTCctttatttatgttgttttacaATCCGAATAGGTGTTACCTAGTAGTTTACTTACTGAAGCAAAGAACCATCGTGGGAGGCTTGGCTTTCCAAGCCTTTCTAAAACAAAGTGAGTgaattttcttgtttgttttaaaaaaaaaaaaaaaacatgtcattaaAGATATGAgcaataaatcaaaattgtcttgctcttaaaaaaaaaagaaaaaagaaaaaaaaaaaagaccctgcATGACACATGGACATTTACTGTACAAAACTATCTTTGGAGGGGGAATTTACAAACGCTTACTGTAAGTTTTATTATAAGTGTCAATGAAAACGTGACTGTATGACTATTTCAATCCGTTCAGTAGTCCAGGAAGTCCAATGTCACAGAGGTCACTGATACTACTGGACAGGGAACAGAgtgattatatgattatatttaaagcagatatagatagattttaaaaaggtcAATCACCATAGATAATCacgttcatttaaatgaatttgaagCGTACCTCTGAAGTTCTCATTATTGACAAGAAACGCGAGGCAAATAAAGAATGGAAATTCGTGCAGTATTACGCTACTATATTTGGCTGCAGACAgaaccatttaataaaaaccatCTTAGAGAAGTTTCACAGATGAAGGTATTATTCGAATTTGACTTTTTCACTCGTTATGAATCGGATTGCAGATACATGAACGTCACATTTGGTCCCGTTTACAGTGAACCATCATTTTGACAGCAGTTATCTGTTTCATTTCAATGCCTCAACTTTATTTTTGCTGCTAATGTTTTATCCGATTTAGAGAGTTTAGGAGTTTTTCACTCGACGGCTGTCACGGCGATGGCTAACAGCTGTCGATAATAATTTTATCAGCTTGGTATGACTTGGAAAAATAACCTTTCTTGCCAAAAGGCTCCTTTTCTAAGCAAATGAAGTGGAGCATGTGCTGTGTGATTACAGAAGACTCGGTTCATTGGTTTTCCACTACCTCTCGTTATgcttagttattttttttctcatctagttgttaatgttaaatgtttattttgatctACTTGAAGCCTAATACTGTAAATGAAATGGGTTTACAAAGAAGAGtagcattttcttttgtttgtttgttgaattctttttagcataattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacttataCTCACAAAGAATTCAGGAAACGTGCTGTTTAAGGGCTAATCCCATATTGCCTATGCAAATATCTTAATTGTCATTTTGGAATAATTAGTGACTGAGGAATGTTTTCCTGAAAATGGGGGGAACACTGGTTTACATTTGCCCTTTTCTGATATTCCTTAGTCTCTTTTCGGTCTCATATTATGTCATATACAAAATCCTTCTTGACGAAACAGCTACTCAATTAAGATTGAAATAAATCTGTGTTGTGTCTACTGTGGGTTGACAGTTCACTATTGATGTAAAGTGCATATTGAATGTAAGGTACTGTGCATGCTAAAGTTTATGGAAATCTCTGGAGCCGCACTGGGCAGGAGGGAAGTAATTGAATTATTTGTGGATGAAGCGAGTgtctattgttgtttttaatggtgCTTCAGTCTTTTTTGCAAAGGTTGAAGGGCTACTTTGGGCACTTTAAACACGCTTTTCACGAACAAGAATATCTACCTCTTGGTTCTGTTCTCTCCGTATGCTTGATATAGAAGAACAACGTAGCTTGCACACATTTCGATTGTTTTGACTTGGTGTAGAGCCACAGGTGAACAGGCAGGCGCTTTTTAGGGACTGAATTGGAGCTCAACCTCATGTTGCTTTTCTTCCTGTTTAAACAAAGGATTGACAGTTTGTGCCCAAGCAAAGACACGTATTCTGCGTAAAGAAAACGCTCATTTACTCCAGCATCTGTTATAGCATGTGCTTGCGTTATGTGATATTGTTGTTATTACAGAAAAGAAGTGTTAGCAGCGCTCAGTAGTCACGGCATTACTGGTGTGCTACACCTTTCCCAATTCTCCATTGTAAGCACATGAAATATGCTCTTTACATTCATGAGACATCAATGCTATTGATTGGAAGGGTTGTGAATTTTAACGACCCgcaatatatttgaatattgcGAGGAGGAAGGCTTCATGTACATCagcttttctttcattaaatCGTTTTTCGCTATCACATGGAATTGGAAAGATATCTGGTAACGTTTTTCACATTCAAATGTGTTGCCTGACTGTAAAATCATTATTCTTAGTTCATTCACTGTCGTCTTTCTAAAGCCTCGTGGTGGATTCTGAATtagttgtgtttatttgatcaattcaCAGTTACTTTCCAATTGTTCTCATGATTAAAACTACGACTACAACTAACTTCACAGAGTAACttgctgaatttttttaatttcaacattttattgctAAAACATTGTGTACCACAAactttacatattaaaaaaaacatagttttgtTGCTTCGTTCACACAAACAACCTGccattgtctgtgtgtgtgtgtctgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagattagAAGTGATATAGAGCAGCCCTGTGTACATTCATGCTATGGTAAAAAGGAGAATTATTAATAGAAGTGCTATAATTTCATGGCATCTTTCAGACTCTGGAGGCAAACTGACTTCTGTATCACAGTTTATCACAGTCACCCTGAAGTGCCTTGAATGTTTAGGCCATGGTTTATGATTTATAGGGAAGATGTTCGTCTTTTAAATCCTGCGCTCTTCTCTAGGATTGAATGCATGATGCACGCTGTAAGCAAAGGTCATTTGCACATGCAGGAAGACGTTAAAGCCAAGATTTTTGGAAATAAGTGTGAACTGatagcattttagcattttagccgTTCAGCTTCTGTTATTGTCCTCtgctcaaaagaaaacaaaatcatcacCATCTTGAAGTTGTGCTTATTATATAAGTGTTTGGTGCTTATTATCTGTCACATGATGAAATATCAAACCTGCCATCCCATTGTCACGGTATTTTTTACAGACTTGCCCTGTTTGGTTTTTCCTTGGATCAGACACAGATCAGGCCTTCACTGAAGGCATTCTTTAGAGCTGTGCCATGATATGAGTCTTAATAAATCACCTATTTTAATAGAAACGATCAAGTATTTAATCATAATTCCGTTGTTTTTAATACCAGGGGACAAACTATAATGCCTTTGTAAATTATAACAACTCATAGaagaaaaatgatattttatatctgGCATgcttttgctatttaaaatagtttagttAACACAATACTGTACAAGTATATATAGAAGTACTGCAGTCTGCAGAAAATAACACTGAATCTCTCGGAAGAGTTTTAAAAATGGATATATATTGGAAATATTAGACGTTTCTTTATACGGTATTCTGTGCTGAAGTCTCAAAACTTGGTGAAATGACTGAAATGACTTTTAGCAATGAAATTAGTTTATTGTAAAGCGATGCGGTTTCGTTCAAGAAAGGCAGTACTGGTTTATTCAAAGTTGAGCCCTTGCGAATGGGCATCTTTCAGATCACATGTACTCCTGCATGATCACTTTAAAAACAGAgaacaaatgtatttgtagaCATCAAATAAAGTGACTTACAATATG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136251 lncRNA downstream 5571 8667496 ~ 8678386 (-) True G92021
XR_006252360.1 lncRNA downstream 6700 8675587 ~ 8677257 (-) True LOC122356657
XR_006252359.1 lncRNA downstream 8421 8669235 ~ 8675536 (-) True LOC122356656
TU136224 lncRNA downstream 91383 8591358 ~ 8592574 (-) True G92004
TU136184 lncRNA downstream 212655 8469272 ~ 8471302 (-) True G91968
TU136475 lncRNA upstream 37850 8738975 ~ 8740089 (-) True G92195
TU136496 lncRNA upstream 95746 8796871 ~ 8803406 (-) True G92205
TU136531 lncRNA upstream 273960 8975085 ~ 8975334 (-) True G92235
TU136557 lncRNA upstream 320685 9021810 ~ 9022207 (-) True G92251
TU136572 lncRNA upstream 406945 9108070 ~ 9108361 (-) True G92263
XM_043255498.1 mRNA downstream 20368 8647454 ~ 8663589 (-) False map3k21
XM_043255497.1 mRNA downstream 20368 8647454 ~ 8663589 (-) True map3k21
XM_043256396.1 mRNA downstream 43950 8585581 ~ 8640007 (-) True prim2
XM_043254914.1 mRNA downstream 182355 8480892 ~ 8501602 (-) True si:dkey-103j14.5
XM_043254915.1 mRNA downstream 189985 8480892 ~ 8493972 (-) False si:dkey-103j14.5
XM_043256406.1 mRNA upstream 43719 8744844 ~ 8778565 (-) True phactr2
XM_043256411.1 mRNA upstream 43719 8744844 ~ 8778557 (-) False phactr2
XM_043256409.1 mRNA upstream 43719 8744844 ~ 8771233 (-) False phactr2
XM_043256408.1 mRNA upstream 43719 8744844 ~ 8765588 (-) False phactr2
XM_043256407.1 mRNA upstream 43719 8744844 ~ 8765229 (-) False phactr2
TU135889 other downstream 636056 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1548815 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1552742 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 2293242 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2458224 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 413968 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1484636 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2223819 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2499821 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 2825055 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile