RNA id: XM_043255632.1


Basic Information

Item Value
RNA id XM_043255632.1
length 3476
RNA type mRNA
GC content 0.46
exon number 23
gene id hells
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4626388 ~ 4672250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTATATAGTTCCAAAATAGAATCGAATAATTAAACATGCGGCGTTAGACGGGCACCCCTTCAAATGTGCGCCGGAATGGTTCAGTCCACAGTGGCGCGAAACGCCGAGCTCTCCACAGAGGAGTTTCACGTTACTGGCGCGAGGTTGTTGTGTCTGCCGGCAACGTGCCTCCACTCCTGCCATCAGAAGAGCGGCTGTatcattgtatatatttttgtgaagaCATAGTCTCAGTTCGCGTGCTGTTTGCGTTCCGTTCCGCTCTTACCAAACGCTCGCGTGTCCGTTGCTTAAGGCTTTGTTGCGCGTTAACTAGTTAGGCCGCCGGTTAGACATATTTGCCTTGCATATATCAAGCTACGCTGCAGACGTTTGGTAAGGTTTGAGAGAAGTGTTTATTTCTACAGACGGTTTATCCAGAACGCAGCAGAAATGAGCGGCGTCGTCAAAGAAGAGGCACGCAGTGTTTCTCCTCACTGCCCCAAACCCAACGAATCCGAGGAGCCAGAAGGAACCGCTATGGAGGATGCCGCCGCTGTCGAAAAAAGCCAGCAAGGAGAGGTTGTCATTACAAaagagatggaggaggaggagaagcaTTTAGTGGAGGagggagagaagaaagaaaaagaaatgatggAAGAGGCCCGGCTGTCATGGGAGAAAGATTCTCAAGAGATGCGTTTCAAACGACTTCAGCATCTTTTGGAGAAAAGCAACATTTACTCCAAGTTTCTGCTCACAAAGATGGAACAGCAGCAGCAAGATgaaaaaaataaaaaggagagACAGGAGAAGAAAGCAGCTAGTAAGAAGCAAAAGGGAAATGATAAAATGACCGTCAAAGTTGAAAGAAAGAAGCGTGAAAGGGAAGAGGATTACAAAATTGCAGATGTTATGACCAGAGAGGAAATTCTGTCGAAAGCTAAAAGACCTAAATTGGAAGAGgGGGCTCATTCGTCAGAGAAACTGGAAGCTGAGGATATAGAGAAGATGAGCGACACCAACTCCGACATTAAAAGTCGGCTCTCTGAGAATTTGCGGGAAAACAGCAAGCAGATGGTGGATCCGAAGAGGACGGTGAATGGCCAGCCGGTGCCTGCAGCGCAGCCCAAGCTCTTCACCGGGGGAGTGATGAGGTGGTACCAGGTGGAAGGCATCGAGTGGCTCAGGATGCTGTGGGAGAATGGTATCAATGGTATCCTGGCTGATGAGATGGGTCTTGGGAAAACCATTCAGTGCATCGCTCATATTGCGATGATGGTGGAGAAGAAGGTCCTCGGGCCCTTCCTAGTTGTGGCTCCTTTGTCCACTCTTCCCAACTGGATCTCAGAATTCAAGCGCTTCACCCCACAGCTGTCTGTCTTGCTGTATCATGGCCCGCAAAAAGAGAGGTGGGACCTGGTGAAGACGATACATCAGGCGCAGGGTTCTCTCAGAATGTGTCCTGTGGTTGTTACTTCCTTTGAAATAGCCATGATAGACAGGAAGCTTCTACAGCGTTTCCACTGGAACTATATGATTGTGGATGAGGGTCACCGGATTAAAAACTTGAATTGCCGGCTGGTGCAAGAACTAAAGATGCTGATGACTGACAACAAACTGCTGCTGACGGGAACCCCCCTGCAGAATAACCTGTCCGAGCTGTGGTCTCTACTCAACTTCCTCCTCCCTGATGTGTTTGATGACCTGAAGAGttttGAGTCATGGTTTGACATCAGCACCATCACTTCAGATGCAGAAAACATTGTGGCTAATGAGCGTGAGCAGAATATCCTTCACATGCTTCATCAGATCCTCACACCCTTTCTTCTGAGAAGGCTGAAGTCCGACGTCACGCTGGAGGTTCCACCTAAGAAAGAGATCGTAGTGTACGCGCCCCTCACCAACAAACAGGAGGCCTTTTACATGGCCATAGTTAACAGGACTATAGCAAAGCTGCTGGGACAGGAGAAGGATGTTTCTGCTCCTGTGCCGCTAACGTCCAGCGGCCGACCAATGCGCAGGGCCGGGAAGGTGGTCAACTACTTTGAGTCAAACACTGATTCTTTGCAAGATCTTGAGAAATACCTAGAGAAGGTTCAGAACGAGGTGGAAAGTCAGCCAAGCTCCAGCCCAGTGTTGGATGTCTTCATGCCGGTTAATGCTCAAATCAACTTGAAACTGCAAAACATACTGATGCTGCTGAAGAGGTGCTGCAACCATGCTTACTTGATAGAGTATCCCTTGGACCCTGCCACTGGAGAATTTAAGATTGATGAGGACTTAGTGGAAGCATCAGGGAAGCTTCTTATCCTGGACCGAATGCTTCCTGAACTGAAGAAAAGAGGGCACAAGgtGCTGATCTTCAGCCAGATGACCTCTATATTAGACATTCTGATGGATTATTGTTATCTCCGTGGTTATGAGTACAGCCGGCTGGACGGGTCAATGAAGTACACAGCCCGAGATGAGAATATGAAGAAGTTTTCTTCTGATCCAGAGgtgttcctcttcctcctgaGCACTCGAGCTGGTGGTCTTGGGATCAACCTCACAGCTGCCGACACAGTCATCATCTTTGACAGCGACTGGAATCCCCAGGCAGATTTGCAGGCTCAGGATCGGTGTCACCGTATTGGGCAAACGAAGCCTGTGATGGTTTACCGCCTCATTACGGCCAACACCATTGATGAGAAGATCCTGGAGAGAGCCTCTGCCAAGAGAAAGCTGGAGAAGATGGTCATTCACAAAAATAAGTTTAAAGGCTCTAAAGCAGAGCTCAAACAGACCAAGAGCTGCTTGGATGTAAATGAGCTTGCAGAACTGCTGAAGTCCAGAGACTACGACAGGGCAGTGAAGGGCACTAAAGGAAAGGTCATCAGTGATAAAGATCTACAGATCCTGCTGGACCGCAGTGATTTATTGAATCAAGCCAAGAAGCGTGTTAAACGGGAGAAGGACGGGGTGTTTAAAGTTATTGACACCAAAGATGATAGTGGTGACATCAGTCTGTCTTGAAATCTGCCATTAGGCCAAAGTTGAGCTATGATTGTGACACCCATCAAGCAAAGCTGCCTGCTTGTTCTCCTCAACTTTTTCCATTTTAGACTTAAGTTGACCATCGTTGCTTTTAATAAGTCCATCCTTTGGTTATGATTGTTAGCACATTTAACATGTTTCTTTTTCCCAATGCCATGTCAAGTTTTGTTTTGGGATTAGCACGAAAAAAAGGAATCCTACATTTTGGCTATGTTGTAAATAGTGTTATACATTTCATATGTAGTTAACTGAATAGAAATTGCACATGTAAACCGCTTTAACGCACTTTCACCCTCTAGAATACTATAgaacaaacctttttttggttttttcaagataataaatattttctatactatgcgtgacatttatttaaagttgggCTATAGTCTTGCTTTTCAAACAACTGCAAAAGTGTTCCATTACTACAGGAGAAAGTGTGCATGTGCACA

Function

GO:

id name namespace
GO:0045132 meiotic chromosome segregation biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K19001 HELLS, DDM1; ATP-dependent DNA helicase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134419 lncRNA downstream 3587 4549111 ~ 4622804 (-) True G90786
TU134415 lncRNA downstream 41430 4560776 ~ 4584961 (-) False G90785
TU134416 lncRNA downstream 41430 4560776 ~ 4584961 (-) True G90785
TU134435 lncRNA downstream 55633 4545021 ~ 4570758 (-) True G90802
TU134375 lncRNA downstream 212620 4390355 ~ 4413771 (-) True G90750
TU134496 lncRNA upstream 57237 4690885 ~ 4698612 (-) True col13a1
TU134506 lncRNA upstream 116784 4750432 ~ 4750968 (-) True G90842
TU134515 lncRNA upstream 196103 4829751 ~ 4833144 (-) True G90846
TU134800 lncRNA upstream 324735 4958383 ~ 4959411 (-) True G91022
TU134803 lncRNA upstream 330954 4964602 ~ 4964959 (-) True G91025
XM_043255642.1 mRNA downstream 15283 4607224 ~ 4611108 (-) True galm
XM_043255442.1 mRNA downstream 154441 4462022 ~ 4471950 (-) True socs5b
XM_043255262.1 mRNA downstream 180103 4441892 ~ 4446288 (-) True prop1
XM_043255258.1 mRNA downstream 188899 4404523 ~ 4437492 (-) True ttc7a
XM_043254528.1 mRNA downstream 272640 4351284 ~ 4353751 (-) True epcam
XM_043254512.1 mRNA upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XM_043254511.1 mRNA upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XM_043254508.1 mRNA upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XM_043254509.1 mRNA upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XM_043254510.1 mRNA upstream 39318 4672966 ~ 4689168 (-) True LOC122356061
TU133931 other downstream 1604529 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 1999234 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 2041060 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 2381313 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2934456 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 39318 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 39318 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile