RNA id: XM_043255642.1


Basic Information

Item Value
RNA id XM_043255642.1
length 1173
RNA type mRNA
GC content 0.54
exon number 7
gene id galm
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4607224 ~ 4611108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGGGCGGAGCTTTGTAGTTTATTAACTCAGAGTGTAGTCGTTTGTGCCGCAGTGTCGTGGCTTGCTTGGGAATGACAGAGGTGTGTAAAGAGGAGAGGGGTGCAGCGGAGAGCTGGAGGCTGTGCTCCGGCGCGGTGAGCGTGGAGATACTTTCCCTGGGCTGCGTGGTCCAGTCCATCAGGACCCCCGACCGACGCGGGCAGAGCGCGGATGTAGTGCTAGGATACGACGAAGCCGAAGGCTATCTCTCAAACCCTCGCTACTTTGGAGCTGTGATAGGCCGGGTTGCAAACCGCATTGCCAAGGGCCGATTTGTGCTAGACCAGAAGGAATATAAACTGGCTATAAACAATGGACCCAATGCTCTGCATGGAGGACTAAAGGGCTTTGACAAgGCCGTGTGGAGCGCAGAGGCGGTGGATAACGGAGTGAAGCTGAGTCACAGCAGTCCAGATGGAGATGAGGGATATCCCGGGAGCCTAAAGGCCTCCGTCACCTACAGGCTGGAGAAGAACACACTGAGTGTGCTGTACCACGCACAGACGGACCGGACTACACCCGTCAACCTCACCAACCATTCATACTTCAACCTGGCTGGACAGGGGACGGCAGACATCTACGACCATGAGGTGACCATCTTAGCAGACTCGTACTTGCCTGTGGATGATACGATGATCCCCACAGGGGAGGTGAAACCTGTGGAGAAGACCCCGTTTGACCTGAGAAAGCCTGTCCTTCTGGGCTCCAGACTGAAAGAGCTGCCCGGTCCAGGTTTTGATCACAACTTCTGTCTGTGTTCACCAGGCGATCCGCCACTTGAGCGGAAATGTGCTCGAGTGGTGCATCCTGGGACGGGTCGTGTCCTGGAGGTCAGCACTACACAGCCCGGGGTTCAGTTCTACACGTCCAACTTCCTGGATGGGACGCTGAAAGGAAAGGGTGGAGCCGCTTACTCAAAACACAGTGCCTTCTGCGTAGAGACCCAAAACTGGCCAGACGCCGTTAACCagCCTCATTTTCCTGATGCTCTGCTGAAGCCAGGAGAGACGTACACGCACGCAACACACTTCACATTCTCAGTGCTCTGAAATTACATCAGCATGTGAAGTTTACTTTTACAACTGAACATCTTTTCTACAGAACCAATACAATGTACTGCTTTTAAGACCA

Function

GO:

id name namespace
GO:0019318 hexose metabolic process biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0004034 aldose 1-epimerase activity molecular_function

KEGG:

id description
K01785 galM, GALM; aldose 1-epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134415 lncRNA downstream 22263 4560776 ~ 4584961 (-) False G90785
TU134416 lncRNA downstream 22263 4560776 ~ 4584961 (-) True G90785
TU134435 lncRNA downstream 36466 4545021 ~ 4570758 (-) True G90802
TU134375 lncRNA downstream 193453 4390355 ~ 4413771 (-) True G90750
XR_006252372.1 lncRNA downstream 259700 4338842 ~ 4347524 (-) True LOC122356721
TU134496 lncRNA upstream 79777 4690885 ~ 4698612 (-) True col13a1
TU134506 lncRNA upstream 139324 4750432 ~ 4750968 (-) True G90842
TU134515 lncRNA upstream 218643 4829751 ~ 4833144 (-) True G90846
TU134800 lncRNA upstream 347275 4958383 ~ 4959411 (-) True G91022
TU134803 lncRNA upstream 353494 4964602 ~ 4964959 (-) True G91025
XM_043255442.1 mRNA downstream 135274 4462022 ~ 4471950 (-) True socs5b
XM_043255262.1 mRNA downstream 160936 4441892 ~ 4446288 (-) True prop1
XM_043255258.1 mRNA downstream 169732 4404523 ~ 4437492 (-) True ttc7a
XM_043254528.1 mRNA downstream 253473 4351284 ~ 4353751 (-) True epcam
XM_043256155.1 mRNA downstream 281749 4245731 ~ 4325475 (-) False thada
XM_043255633.1 mRNA upstream 15280 4626388 ~ 4672250 (-) False hells
XM_043255632.1 mRNA upstream 15283 4626391 ~ 4633648 (-) True hells
XM_043254512.1 mRNA upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
XM_043254511.1 mRNA upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
XM_043254508.1 mRNA upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
TU133931 other downstream 1585362 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 1980067 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 2021893 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 2362146 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2915289 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 61858 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 61858 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile