RNA id: XM_043255654.1


Basic Information

Item Value
RNA id XM_043255654.1
length 4827
RNA type mRNA
GC content 0.47
exon number 23
gene id dna2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8291171 ~ 8300745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTAATTTCACTGTCGCTAGATGGCAGCGTGGATGATGGCGACGTAAAGGTAACCGGCAAAAAAACGACGAGGAAACGCTCGAGTTCTCCTGTGAAGAGTTCACTGACTGTACGCGGGAAATTTGAGATCGCAGTGTTTACTTTCCAGGGATGCAGCAAGACTTGTTCACGCACGGAATCTTCTGCTTTTAATGTTGTGTAAAAGCATCTGTGAGCACCGTTTGGATGACCGTTGCTCCCGGATGCTAGCTGCTTCTGGACGCGTTATATTTGAGCCGTGCTAGCGGAGCATATCTTTATATGCGGTTGTCACAGTGATGCGAGGAGTTTGGTTTTAGTGGAGCGGCTTAATGTTTTTGGACTCTccgaatattatttatttatttacttacggTCCACGATGATTAAGTGTAAATCCAGAAAATCCTCCATGGTCACTGGAGTTCAGTCCAACATTTCTGCCTTTTTTGTCTCTAAGGTTTCCTCAAAGTCacctaaaaaaaatgcaggtgGGATTGCAAGATTTCCCATTTCACtgaagactggttttgtggagGATAAAAATGTCCCCTGCTCTCCAACCCCTTCTGCTGTTCCAGAGACGCCAGACAATCTGAGGAGCGAGAACCCTTCAGACACTTCCTACGAGAACCGTTCACCTGTCTCCCGTGGCCTACATGCTAAAGGTGTCAAGGGCAAACCTAGCCTGACGGCACGTAAGCTGATGCAGCCacagaaaaacagcagcacagaGCCTGAGGAAACTTTTGAGCTTAAGAATGGCTTAAGTCACTCTGGTTCTGTGAAGAGGTTGTTGCACAGCTCAGAGAACATCCAGAGTGCCAAACGGCCCAGGACCATGCAAGTTCAGAAAGTACCTGATTGTGATGCAAGCTCTCCACCGGCCAATCGAAATGCATCGTCAGAGAGTCcggagaaaaaaatgaaagccgAGTCAGTCAGTTTTGAGAATGGCCGATTGGCAGATGGGTCTTGTGAAATGAATGGGAAAACAAATGGTTTGTCAAAGCCCTCAAACAAATCCTCTCGGCATCTGAGCTTTAGTACtagtgaaaaagaaaattcgCTTGCTGTAAACCTGAAGCCAGAAATAGACTTGAGTATGGTTTCTGGGACTAATGATTTTGATCTTGTGATGTCGTATAGTTCATGGGTACAAAATGGACCTACTGAAGACAAAGAGACTTTTCTCAACTGTCCGGTCACTAAAAAGAGACCTCTGAGCACAGCTGATCTGCAAGTGAAAGACAAAATTGCTGATAGAAAAACATTGCCAGTCCCATTTGAAGATGATTTTACTGATCTGATGGATGATTGGTTTGATGACGGCATGGAGCAGAAATCGGAGGCACCAAAACCCAAGAAGTTCAGTCATGAgaaaaacaaatgtataccAGAGCACGTTATACTGGCCTCTGGTGTGCATAATCGATACTGGGTCCTGGACGTACTGGATATTACCTCATCACGAAGTTGCACTGAAAAGCACTTAACCATCACCTGCTCCAAGACAACACAGTCCAGAGAGACCTGTATTCTTAAAGATGGCTGGGAGAGTACTCCGGTTGCTGTTGGAGATGTCATTCACTTGGAAGGGAGGTGTGTTTCTGGCTTGTGGACGATTGATAGAGAGTTTGGTTTCCTGGTTCTGCTGCCTGACCTGCTTATATCGGGGACCAGCATTGCCAACAGTATTCGCTGCATGAGGCGAGGGGTTCTGGGAGAGATGTTTAAGGCATTTGATGGTGGATCTAAGCAGATGTTAAATGGAACCATAGTTCATGATATTTTCCAAAAAGCAGCCATGGCCTCAGATTTCTCCCTACAGAGGATACAGACATTCGCTGCAGAGGCCCTAAGAAGCCCCAACTACCTCGGACAAATGTATAGTCTAAAGCTGACCCAGGCTGACATGAAACAGGAAGTGGAAGGATATCTTCCCTCTCTATCTGAGTGGTCAAAACACTACCTCTACTCTTCACCACAGGCTGGACAAAAGCAGCTCATTCTCaaactCCCTAGTGACGGGGCTCTGAGCAAGCAAGATGCCACCTGTAGCGTGACGGTAACAGATTTTGCGGACATAGAGGAGAACATCTGGTGTCCACGTTTTGGCCTGAAGGGGAAGATAGACGTCACAGCTGGAGTTAGGATTCATCGAAGAGGCAGAAAGCCCATAGAGAGGATTGTGCCACTGGAGCTGAAAACTGGCAAGGAGTCCAACTCCATCGAGCATCGCAGTCAGgttattCTGTACACTTTGATGAGCTCAGCTAGACGTTGCGATCCAGAGGCAGGTTTCCTTGTCTACTTGAAGACTGGCAGTCTACATCCCATTGTGGGCAACCACATGGACAGGAGAGagctgattaaaataagaaactCATTGGCCCATCACATTGGAAACAACCTCATTAAGGTGGATGGAAGAAGTCACATGGCCTCATTGCCTGCCATTGTGTCTGACCAGCAGACATGCAAGTACTGTCCTCAGAAAAGGAACTGTGCAGTTTACAACagAGCTGTAGAGAGAGATCCTGTGGAGAACTGTAGTGAAGATCCACAGGCGTTTGTGCAGTCGGAGAGCGAGCACCTCAGCCCTGTGCACCTCCAATACTTCAGCCACTGGTTGATGCTTTGCCTGCTGGAGGCTCTCACCATGGAGAACAAAGGAGGTCGGCGCAATATCTGGCTTCAGACTGCTCAGCAGAGGGAGAAAAGTGGTGGCTGTGTGGGTAACATGCAGTTAGCTGGAGACGTCAGTGTCCTGTCTGATAATGTATATAAGCACAGATTTGTGAGGAAGGAGGGTGATCAGAATCTCACTGGGCTGATAGTGGGCGACAGAATTGTGGTCAGTGATCAGGAATCGGTCCTCATAGGCCTTGCCACAGGAtatgtcacagaaataactgtcaGTGGATTGACTTGCTCTTTGGACAAAAACCTTTCCAAGTATTCCTCAAAAACAGTTTTCCGCCTGGACCAGGATGAAGGTGCAGGCGGTCTTGGTACCCATTTAGGAAACCTGTCTATGTTAATGGAAAACACTCCCACCAGTGAAAGACTGAGGGAGTTGATTGTGGAATTCAGACCTCCCCAGTTCATTGACAGCCTCAGCAGTGTTTTGCCACGAGACGCCAAGGACACCGTGGCCAACATTTTAAAAGGACTCAACAAACCCCAGAAACAAGCCATGAAAAAAGTGCTACTGTCTAAAGATTACACGCTTATTGTGGGAATGCCAGGTACTGGGAAAACTACCACCATCTGTACactgGTGCGTATACTCCATGCTTGTGGCTTCAGTGTACTTCTGACTAGCTACACCCACTCTGCTGTGGACAACATCCTCCTGAAACTAAAGAGGTTTAAGATTGGCTTTTTGCGACTGGGTCGTGCTCAAAAAGTGCACCATGACATCCTGCCCTTCACAGAAGAGTCATATCGGGCCAAAGGCATCCAAACACTTGAAGAGCTGGAACAACTCTATAACAAAGAACTGATTGTGGCCACTACCTGTATGGGTGTAAAGCACCCAATTTTCAGCCGTAGACGCTTTGACTTCTGCATCGTGGATGAGGCATCTCAGATCAGTCAACCTGTATGTTTGGGTCCGCTCTTCTACGCCCAGCGCTTTGTCCTGGTGGGAGACCACCAACAACTTCCACCGATTGTACAGAATGCTGAAGCCAGAACACTGGGCATGGATGAGAGTTTGTTCAAACGCCTGGAGCACCACATTGATGCTGTTGTTCAGTTGAATGTGCAGTACCGAATGAACAGTGCGATCATGTCCCTGAGCAATGCTCTGATGTATGAGGGCCGACTGGAGTGTGGCTCTGAGAGGACGGCGAGCGCAGTCCTGCAGCTGTCCGGTAGAGCTCAGGTTGAGAAGGAGCTggagctgtttgtgtgtgagccGCAGTATAGTGCTTGGGTCCAGGCTGCGCTGGAGCCCAATAGTCCTGTCTGTTTCCTGGACACCTCTGAGgttccTGCCCCCGAGACGGTGGAGAAAAGTGGCATCAGCAACCACACAGAAGCCATATTGGTACAAGCCCTTGTCACTCTGCTGCTCAAGGCTGGATGCAGAGCGTCTGATATCGGAGTCATTGCTCCATATCGACAGCAGCTAAAAGCCATCTCCAGTCTGTTTCAGGGAGATGCCTTTAAAGCTCTGGAAGTCAACACCGTGGACAAATACCAAGGACGTGACAAGAGCGTCATCATTGTGTCCTTTGTTCGAAGCAACACTGAAGGCAACCTGGGTGAGTTGCTCCAGGACTGGCGCAGGCTGAATGTGGCCATCACTAGAGCCAAACACAAGCTCCTCATGCTGGGCTCAGTGCCCACGCTTCGTCGCTACGCACCACTAGAGAAACTTCTCTGCCATCTTCAAAAGAAAGATATGATCTTCCAGCTGCCTGCTGCTGCCCATGAGGTACTACCTGGAATCCTCTtgtgaaaaaaaccaaaatccTCTTCTAATCCATAGCGTCTAAGATAATACTATGAAACAATTACTTGAACAAACTAGAATTGAAATGGCATACATAAGCTTCTAATAACAATAGACaccatttatttagtttaaataatgaatgtgaagtttaataataaatcagtgcTGACAGGATCTAGTACATAATTACACTCATGGCTTTCTTTGCCCAATCCCTAcctcttgttgttttttgttgttgttttttacatcttttacagttttatctgtgtaattgttttttgtatgtgctttttatatatataagaattttACGAAtgtatacatttgtttaataaaaa

Function

GO: NA

KEGG:

id description
K10742 DNA2; DNA replication ATP-dependent helicase Dna2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135956 lncRNA upstream 8584 8282155 ~ 8282587 (+) True G91829
TU135955 lncRNA upstream 9170 8281571 ~ 8282001 (+) True G91828
TU135953 lncRNA upstream 19777 8271162 ~ 8271394 (+) True G91826
TU135952 lncRNA upstream 21590 8269311 ~ 8269581 (+) True G91825
TU135927 lncRNA upstream 96853 8192326 ~ 8194318 (+) True G91809
TU135958 lncRNA downstream 872 8301617 ~ 8370121 (+) True G91831
TU135970 lncRNA downstream 4203 8304948 ~ 8305380 (+) True G91842
TU135971 lncRNA downstream 4823 8305568 ~ 8308919 (+) True G91843
TU135964 lncRNA downstream 8533 8309278 ~ 8315456 (+) True G91836
TU135967 lncRNA downstream 12369 8313114 ~ 8316412 (+) True G91839
XM_043254623.1 mRNA upstream 35073 8238414 ~ 8256098 (+) True nfkb2
XM_043254621.1 mRNA upstream 65920 8223770 ~ 8225251 (+) True zgc:193505
XM_043255410.1 mRNA upstream 68544 8215939 ~ 8222627 (+) True sncga
XM_043255411.1 mRNA upstream 68544 8215939 ~ 8222627 (+) False sncga
XM_043255408.1 mRNA upstream 100079 8171771 ~ 8191092 (+) False bmpr1aa
XM_043255659.1 mRNA downstream 18753 8319498 ~ 8324207 (+) True hnrnph3
XM_043255660.1 mRNA downstream 18753 8319498 ~ 8324207 (+) False hnrnph3
XM_043255661.1 mRNA downstream 20376 8321121 ~ 8324207 (+) False hnrnph3
XM_043254681.1 mRNA downstream 62252 8362997 ~ 8368788 (+) True tacr2
XM_043254903.1 mRNA downstream 121202 8421947 ~ 8435924 (+) False pik3ap1
XR_006252298.1 other upstream 409688 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 452230 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1159675 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 3293275 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134242 other upstream 4047130 4241132 ~ 4244041 (+) True G90660
TU135961 other downstream 5741 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 365523 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 438328 8739073 ~ 8740089 (+) False sf3b5
TU136388 other downstream 860816 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1935171 10235916 ~ 10249725 (+) False LOC122356813

Expression Profile