RNA id: XM_043255655.1


Basic Information

Item Value
RNA id XM_043255655.1
length 3161
RNA type mRNA
GC content 0.47
exon number 18
gene id rufy2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8324645 ~ 8337036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGACGGGTCGTGCGGGAGCGCTCGGGTGTAAACAAATCTGGAAAGCCGTTCGTTCGCGAGACATGCGTGGAAAGCGCACGTCGCGCGCGGGGCGTTGACGAGGAGCACCGCCGCGGAAAGCGCTCGAATTAGCTCGTTGACCGTTTATCGATGCCGCTCGACGCCTCGCCGCCGCGGTGGTTGGGTGAAGCGCTATCCTGAGCCGCGCGCCGTCGTCGTTAGCGATGGCGACACCTGCAGAACAGGACCTCGTGCTGGCAGAAGCAGAGAGCAACAAAGAGAGAGCGCAAGTGTTCGGCGTCCTCAGGCTGCAGGAGGACAAGTCGGCCGCCGCCGAGAAAGCGAGCGGCGCTGCCATGAAATCTGGGGACGGGAGATGGCAGGCGCCCATATTCGCGTTAGCCCGAAAAGCGTCAGAGACCTTCTCGGGTGGCATTCACGTCCTGCCCAAAGTGGCGGAGCCCAAAACGTCGCCCTTTTCCGAAGAGTGGGGCGCGAAGGCATTTCGAGACCCTACGGCGATGGAACGAGCGAACTTGCTTAATATGGCTAAGCTCAGTATCAAAGGCCTGATCGAGTCGGCTCTGAGCTTTGGGCGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACACGGTCTCAAAGTGAAGAAATCGTTCCTTGGATACAACAAGTCGCTGTGGGGGCCTCTAGAGATGGTTGAGAAGCTCTGCCCAGAAGCAGGCGAAATCGCAGCCAGTGTACGAGACCTTCCCGGCCTGAAGACGCCTCTGGGCAGAGCCAGAGCATGGCTGAGACTGGCACTGATGCAGAAGAAATTAGCAGATTACCTACGTCTCCTCATCACCAGGAAAGATATACTTAGTGAGTTCTATGAGAACTCTGCAGTGATGCTGGAGGAGGAGGGAGCCGTCATCGTTGGTCTCCTGGTGGGGCTTAACGTCATAGATGCCAACTTATGTGTGAAGGGCGAGGACCTTGATACACAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGATTACAGAAGCGAAGAAAGAAATGGACAAATTGCAGCTATTTTGGATCAGAAGAACTACGTTGAAGAATTAAATAGGCAGCTGAATTCTACAGTTCAAGGCTTACAGGGACGCGTGGAGTCATTAGAAAAATCCAATTCCAAACTCATTGAAGAGTTGGCAATagcaaaaaacaacataattaaattacaagAAGAGAACCACCAACTCAGAACAGAAAATTCAGTGATTCTTATGAAAGCACAGCAGCGTCTTGAGGTTGCAGAAGGAGATTTGAACTGTGAGCTTGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAATGAGGCAAGACGGCAACTCAAAGAGGAATGTCAACTCAGGCAGGATGTGGAGAACGAACTGGTTGTGCAGGTCAGCATGAAGCAGGAGATGGAAATGGCCATGAAACTGTTAGAAAAGGACATCCATGAAAAGCAAGACACTCTGATTGGACTTCGGCACCAGTTAGATGAGGTGAAAGCCATCAATGTGGAGATGTACCAAAAAATGCagTCTTCAGATGACAGCATgagacaaaaaaatgacatgatcGCAAGGTTGGAGGAGAAGACCAATCAGATAACGGCGACTATGAAACAACTAGAACAAAGATTGCAGGATGCCGAGAGGGAGCGTGCCAGTGCCGAAGACGGGGTGCGCAAATTCAAGCAGGACTTCACAAACAAAGCTGACAGCCTTCAAAAGCAGATCGCCCAGAGAGAGAAGCAAATgatGCAGCTGGAAACAGATTTGAAAATAGAAAGGGACTGGCGTCAGACGTTACAGAATGAATTAGAAAGAGAACGAGAGACTATCGCCCAACTCACAGCTGAAGCACAGCAAATCAATGGACTTAAAAAAGAGTTTCACAGGTTGCAAGATGAGAACACGCAGCTGAAGGGAATCTGTGAGGAGCAGGAACAGGCGCTGGAGGAGCTGGGCTGCAAACTCAGCGAgtcaaaattgaaaattgaagATATAAAAGAAGCCAACAAGGCACTTCAgGGTGGACAGGTCTGGCTGAAAGACAAAGATGCTACGCATTGCAAACTTTGCGAGAAGGAATTTTCAATCTCCAGAAGAAAGCACCACTGCAGGAACTGTGGGGAGATCTTCTGCAATGCCTGCTCAGATAATGAGCTGCCACTTCCCGCTTCGCCCAAACCCGTGAGAGTCTGCGACACCTGCCACGCTCTTCTCCTCCAACGCTGCTCCTCCAATGCCACGTAAGATAGAAATGACAGCACATCGTCACAAGGGCCAAAATCAGCTTTAACTCACAGACTGCGCTGTCCAGCATCGTCAAAGTGACCAAAATGGATGCACACGTTTCTCTGTGTTTGAAGTTTACATTTCACAAAAGCCTGTTGCCTCAGAGAAGACTTAATGGCGCGTGTGCAGATGGCCAATGCAGTGTTTGTCACAGACACAGtgcaatgaaagaaaatgagttTACAAATGGATTAATGACTCTGAGTGCCTCCATCTGGGCTGCAACTAGACTGATTTAGGTTATTTATACTAGTACAACACTCCCATGCATTGTAAGTATACTTTTGATATATAAGGGTGAACAGGTTTCATTCCTCAAGAGTCAGAAGTGAGTAAATGCAGTTACTTAAAGTGATATCATTTCTTGAgcaattatatttcaaattcagTTGAAATACATAACCTTACATTCATGCGTGCCTGTATAACAAGCCAAACTGACGAATGGGGATTTGATGAATATTTCCCTGAATCTAGACgggcaaaaaaaatgtatgggtATATGtaagtaaaaatagttttagtgctGCTCGAGAATGACTGAGGTGGATTCACTTTAAATAGCACAGAAATAACGTTCTGAATATGGTGTTCAGGTTTCTTGTCTGCAAGCGGTATTATTTCACAGTTGCAGGTTTACTTTTGTACAGAACTGGAACACTACTCACTTTTGAGTATTTGTGCTAACGTTTGTCTGGATAATTCCTCGAAATACAACTGTTAACTTAAATGTGAAGTTTATGTATGAAACTATACATACGCCTTAAATCACTAAAGTTGATCATAATTTCAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12482 RUFY1_2, RABIP4; RUN and FYVE domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136081 lncRNA downstream 56572 8267766 ~ 8268073 (-) True G91916
TU136047 lncRNA downstream 102030 8168737 ~ 8222615 (-) True G91891
TU136044 lncRNA downstream 156713 8157258 ~ 8167932 (-) True G91889
TU135912 lncRNA downstream 192797 8131243 ~ 8131848 (-) True G91796
TU135882 lncRNA downstream 283427 7997680 ~ 8041218 (-) True G91769
TU136169 lncRNA upstream 98961 8435026 ~ 8435920 (-) True G91960
TU136183 lncRNA upstream 129016 8465081 ~ 8468983 (-) True G91967
TU136184 lncRNA upstream 133207 8469272 ~ 8471302 (-) True G91968
TU136224 lncRNA upstream 255293 8591358 ~ 8592574 (-) True G92004
TU136251 lncRNA upstream 331431 8667496 ~ 8678386 (-) True G92021
XM_043255664.1 mRNA downstream 5830 8315189 ~ 8318815 (-) True LOC122356684
XM_043255662.1 mRNA downstream 9821 8309437 ~ 8314824 (-) True LOC122356681
XM_043255663.1 mRNA downstream 15996 8306483 ~ 8308649 (-) True LOC122356683
XM_043255665.1 mRNA downstream 18797 8303493 ~ 8305848 (-) True LOC122356685
XM_043255667.1 mRNA downstream 21737 8300820 ~ 8302908 (-) True LOC122356686
XM_043255998.1 mRNA upstream 7031 8343096 ~ 8361457 (-) False tspan15
XM_043255997.1 mRNA upstream 7031 8343096 ~ 8361454 (-) True tspan15
XM_043254678.1 mRNA upstream 32872 8368937 ~ 8381953 (-) True hk1
XM_043254677.1 mRNA upstream 50981 8387046 ~ 8396309 (-) True hkdc1
XM_043254679.1 mRNA upstream 60814 8396879 ~ 8402518 (-) True supv3l1
TU135889 other downstream 276744 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1189503 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1193430 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 1933930 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2098912 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 779028 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1849696 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2588879 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2864881 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 3190115 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile