RNA id: XM_043255657.1


Basic Information

Item Value
RNA id XM_043255657.1
length 2074
RNA type mRNA
GC content 0.48
exon number 13
gene id rufy2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8324645 ~ 8337036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGGTCGTGCGGGAGCGCTCGGGTGTAAACAAATCTGGAAAGCCGTTCGTTCGCGAGACATGCGTGGAAAGCGCACGTCGCGCGCGGGGCGTTGACGAGGAGCACCGCCGCGGAAAGCGCTCGAATTAGCTCGTTGACCGTTTATCGATGCCGCTCGACGCCTCGCCGCCGCGGTGGTTGGGTGAAGCGCTATCCTGAGCCGCGCGCCGTCGTCGTTAGCGATGGCGACACCTGCAGAACAGGACCTCGTGCTGGCAGAAGCAGAGAGCAACAAAGAGAGAGCGCAAGTGTTCGGCGTCCTCAGGCTGCAGGAGGACAAGTCGGCCGCCGCCGAGAAAGCGAGCGGCGCTGCCATGAAATCTGGGGACGGGAGATGGCAGGCGCCCATATTCGCGTTAGCCCGAAAAGCGTCAGAGACCTTCTCGGGTGGCATTCACGTCCTGCCCAAAGTGGCGGAGCCCAAAACGTCGCCCTTTTCCGAAGAGTGGGGCGCGAAGGCATTTCGAGACCCTACGGCGATGGAACGAGCGAACTTGCTTAATATGGCTAAGCTCAGTATCAAAGGCCTGATCGAGTCGGCTCTGAGCTTTGGGCGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACACGGTCTCAAAGTGAAGAAATCGTTCCTTGGATACAACAAGTCGCTGTGGGGGCCTCTAGAGATGGTTGAGAAGCTCTGCCCAGAAGCAGGCGAAATCGCAGCCAGTGTACGAGACCTTCCCGGCCTGAAGACGCCTCTGGGCAGAGCCAGAGCATGGCTGAGACTGGCACTGATGCAGAAGAAATTAGCAGATTACCTACGTCTCCTCATCACCAGGAAAGATATACTTAGTGAGTTCTATGAGAACTCTGCAGTGATGCTGGAGGAGGAGGGAGCCGTCATCGTTGGTCTCCTGGTGGGGCTTAACGTCATAGATGCCAACTTATGTGTGAAGGGCGAGGACCTTGATACACAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGATTACAGAAGCGAAGAAAGAAATGGACAAATTGCAGCTATTTTGGATCAGAAGAACTACGTTGAAGAATTAAATAGGCAGCTGAATTCTACAGTTCAAGGCTTACAGGGACGCGTGGAGTCATTAGAAAAATCCAATTCCAAACTCATTGAAGAGTTGGCAATagcaaaaaacaacataattaaattacaagAAGAGAACCACCAACTCAGAACAGAAAATTCAGTGATTCTTATGAAAGCACAGCAGCGTCTTGAGGTTGCAGAAGGAGATTTGAACTGTGAGCTTGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAATGAGGCAAGACGGCAACTCAAAGAGGAATGTCAACTCAGGCAGGATGTGGAGAACGAACTGGTTGTGCAGGTCAGCATGAAGCAGGAGATGGAAATGGCCATGAAACTGTTAGAAAAGGACATCCATGAAAAGCAAGACACTCTGATTGGACTTCGGCACCAGTTAGATGAGGTGAAAGCCATCAATGTGGAGATGTACCAAAAAATGCagTCTTCAGATGACAGCATgagacaaaaaaatgacatgatcGCAAGGTTGGAGGAGAAGACCAATCAGATAACGGCGACTATGAAACAACTAGAACAAAGTGACAAAGATCTACTCAGCCAGACAAGAACTCTTGCTATGTCGTTTGTAAAATGCGCTAGCACAGATACCGAGCACCAGTACAAACTAGTCAAAGACATTTCCTTCTGATATTAAGATAAATTTGCTCTTTGTTTCTTAACACTAGTAGTGTGGCGATACGCAGTGTTCTTAAAAGTTGATCGTTCTTCACTAGCCccttttaaagtttaatttgaTGATGGTTACTGTTTTTCCACATACTATTTAGTGAGCAAATCTTTCTTGTGGTTCTATAGCATAAATATTTACCTGTAACAATTAACAGTAAAAGAAACCACAAATATGACATGTCTTTTATCACGCTCTTCAATAAATTTGATGTTTTCAACTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136081 lncRNA downstream 61051 8267766 ~ 8268073 (-) True G91916
TU136047 lncRNA downstream 106509 8168737 ~ 8222615 (-) True G91891
TU136044 lncRNA downstream 161192 8157258 ~ 8167932 (-) True G91889
TU135912 lncRNA downstream 197276 8131243 ~ 8131848 (-) True G91796
TU135882 lncRNA downstream 287906 7997680 ~ 8041218 (-) True G91769
TU136169 lncRNA upstream 98965 8435026 ~ 8435920 (-) True G91960
TU136183 lncRNA upstream 129020 8465081 ~ 8468983 (-) True G91967
TU136184 lncRNA upstream 133211 8469272 ~ 8471302 (-) True G91968
TU136224 lncRNA upstream 255297 8591358 ~ 8592574 (-) True G92004
TU136251 lncRNA upstream 331435 8667496 ~ 8678386 (-) True G92021
XM_043255664.1 mRNA downstream 10309 8315189 ~ 8318815 (-) True LOC122356684
XM_043255662.1 mRNA downstream 14300 8309437 ~ 8314824 (-) True LOC122356681
XM_043255663.1 mRNA downstream 20475 8306483 ~ 8308649 (-) True LOC122356683
XM_043255665.1 mRNA downstream 23276 8303493 ~ 8305848 (-) True LOC122356685
XM_043255667.1 mRNA downstream 26216 8300820 ~ 8302908 (-) True LOC122356686
XM_043255998.1 mRNA upstream 7035 8343096 ~ 8361457 (-) False tspan15
XM_043255997.1 mRNA upstream 7035 8343096 ~ 8361454 (-) True tspan15
XM_043254678.1 mRNA upstream 32876 8368937 ~ 8381953 (-) True hk1
XM_043254677.1 mRNA upstream 50985 8387046 ~ 8396309 (-) True hkdc1
XM_043254679.1 mRNA upstream 60818 8396879 ~ 8402518 (-) True supv3l1
TU135889 other downstream 281223 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1193982 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1197909 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 1938409 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2103391 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 779032 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1849700 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2588883 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2864885 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 3190119 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile