RNA id: XM_043255659.1


Basic Information

Item Value
RNA id XM_043255659.1
length 1857
RNA type mRNA
GC content 0.46
exon number 10
gene id hnrnph3
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8319498 ~ 8324207 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCCTCGGCTCACACGTCAGACCGATCGGTGCGCCTGCAGCGAGGTCAGTGTCCTCTGACAGGCCGCGTTCTCGCGAGACTTCGACACTCCGGACCACCGGACTATCGTTCAGGGTTACCTGAGAGGACGGCGCTTGACGATACAGTCCTGTCAAGGTAAACATGTCTCATAATGATGAAGGATACGTGGTACGGATCCGTGGTTTACCCTGGTCATGCACACAAGAGGAAGTGGCTTCCTTCTTCTCTGATTGTGACATTGTAGGGAAAGTGAACGGGGTGTGTTTTACCTTCTCCAAAGAGGGAAGGCCGAGTGGAGAGGCGTTTGTGGAGCTGAAGACATCGGAGGACTTCAAAAAGGCTTTGGCAAAAGATCGTAAATACATGGGTCATCGTTACATCGAAGTGTTCAAGTCAAACCGTAGTGAGATGGATTGGGTGCTGAAACGCTCCGGTCCCACGGACTACGACAGCAGCAGCGGTTGCATGTTGCGTCTAAGAGGACTGCCGTTTGGCTGCAGTAAAGAAGAAATTGTACAGTTCTTTTCAGGGTTGAAAATCGTGCCAAATGGGATAACATTGCCGATGGACTACCAGGGGAGGAGCACAGGGGAAGCCTTCGTGCAGTTTGCCTCAAAGGAGATAGCAGAAAAGGCTCTGGGGAAACACAAGGAAAGAATAGGGCACAGGTACATAGAGATATTCAAAAGCAGCCGAAATGAAATGCGTGCATACTACGAGGTCCCCCGGAGGATGATGGGACAGAGGCCTAGTCCGTATGACAGACCCATGATGGGACGCGGGGGCTTCTTTGGGCCCGGGCCTGGAAGGGGAAGTGCTGCCCTGGACCAGATGCGCAGCGGAGGCGGTTACAGCAGCGGAGGCAGTTACAACAGCGGTTATGGTGGGTTTGACAACTACAATGGCTTTAACAACTACTGCTTTGGTAACGGCATGTTTGAGGAGCGCGTGCGCGATGATCGAGGAAGAGGAAGAATGGGTGGTCATGGCTACAGCAGCGAATCAAACTCAGGCTTTCACAGTGGCCATTTTGTGCACATGAGGGGCCTTCCCTTCCGCGCTACAGAGGCAGATATCGCACATTTCTTTGCCCCTTTAATCCCTGTGAGGGTGCACATTGATGTAGGACCTAATGGAAAGTCTACAGGAGAGGCAGACGTTGAGTTCGGATCTCACGAAGACGCTGTATCTGCCATGTCAAAAGACAAGAACCATATGCAACATCGTTACATTGAGCTTTTCCTGAATTCAACTTCAAGTGGGCCGTCCGAAATGGGCCGCGGAGGAGGTTTCTATGGCAACTCTGGTGGGATGGGCTCTCGAGGAAGTGGACTAAGGGGGATGTATTGAGGATGCTTACAAATCATGCACTTTTTTAACCCAAAGTTGGAACTTCCAGCTTGGAAggttttttatatgaatatgttttCACATGTTCCTATGAAATATGCCCAAACTATTTTCCTGGCTTGAAGAAAATGAGATCTAAATTCAtctatatctaatatatatatatacatatatatctaatatatatatatttgagctGTTGCATATAGATTGACCGGCTACTGTACATTTTGCTTAATGAATTTTATATGACATTCTGTGTTAAAGTCGAACTAAAGATATGTGCTTTGTATGTATTTTGACTCAGAACTGAGTATGAATAGCTTGAAGCCCAAGTTGCGTGTGTGaaattgcacttttattttctttcccaaAGCAATAACATCTTTTTGGATGTTTAcctgtttttgctgcttaaaatttCTAATTGAAACCTGTGAAATTTACACACCTATggaataaaaccttttattgatatatttta

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135967 lncRNA upstream 3086 8313114 ~ 8316412 (+) True G91839
TU135964 lncRNA upstream 4042 8309278 ~ 8315456 (+) True G91836
TU135971 lncRNA upstream 10579 8305568 ~ 8308919 (+) True G91843
TU135970 lncRNA upstream 14118 8304948 ~ 8305380 (+) True G91842
TU135956 lncRNA upstream 36911 8282155 ~ 8282587 (+) True G91829
XR_006252367.1 lncRNA downstream 12088 8336295 ~ 8338716 (+) True LOC122356687
TU135989 lncRNA downstream 12444 8336651 ~ 8338053 (+) False LOC122356687
TU135992 lncRNA downstream 18917 8343124 ~ 8347157 (+) True G91855
TU136011 lncRNA downstream 61661 8385868 ~ 8386384 (+) True G91867
TU136002 lncRNA downstream 85761 8409968 ~ 8412679 (+) False G91863
XM_043255654.1 mRNA upstream 18753 8291171 ~ 8300745 (+) True dna2
XM_043254623.1 mRNA upstream 63400 8238414 ~ 8256098 (+) True nfkb2
XM_043254621.1 mRNA upstream 94247 8223770 ~ 8225251 (+) True zgc:193505
XM_043255410.1 mRNA upstream 96871 8215939 ~ 8222627 (+) True sncga
XM_043255411.1 mRNA upstream 96871 8215939 ~ 8222627 (+) False sncga
XM_043254681.1 mRNA downstream 38790 8362997 ~ 8368788 (+) True tacr2
XM_043254903.1 mRNA downstream 97740 8421947 ~ 8435924 (+) False pik3ap1
XM_043254901.1 mRNA downstream 97742 8421949 ~ 8435924 (+) True pik3ap1
XM_043254905.1 mRNA downstream 97742 8421949 ~ 8435924 (+) False pik3ap1
XM_043254904.1 mRNA downstream 97742 8421949 ~ 8435924 (+) False pik3ap1
TU135961 other upstream 8674 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 438015 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 480557 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1188002 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 3321602 4992327 ~ 4997896 (+) False si:ch73-49p17.1
XR_006252358.1 other downstream 342061 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 414866 8739073 ~ 8740089 (+) False sf3b5
TU136388 other downstream 837354 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1911709 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 2004937 10329144 ~ 10329279 (+) True LOC122357143

Expression Profile