RNA id: XM_043255663.1


Basic Information

Item Value
RNA id XM_043255663.1
length 1107
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC122356683
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8306483 ~ 8308649 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTCAAAGTCTACCTCGGTCTCAAATACAGCACTAAAAATACTCAAAACATcgaagaaaaaaacagagagcTGAAGAGCTGTAATCAATGGAGATTCCAATATTTACTGTTGATGCTTTTACTAATGTGCCTTTTAAAGGTAATCCTGCTGCAATATGTCTCATAGAGAATGAGCTGCAAGATGATCTTTATCAGAGCATTGCTGCTGAAATGAATTTATCAGAGACTGCTTTCATCACAAAAAGGAATTCTGTGGATTTTTCTTCAGGTTCGAGGTTTGGGTTACGCTGGTTTACTCCCACATGCGAGGTCCCACTATGTGGACATGCTACCCTGGCCTCAGCAGCAGTGCTCTTTTACATGAAAAAAAATATCAACCCTATACTGGTGTTTGAGACGATGAGTGGAGAGCTTTATGTGCGTCAGCATGAAGAATCTCTAATAATGGACTTCCCCTTAAACAAACCAGACCCCCAGgatcaacatgaaatcaaaggTCTTCTGAAAGCCGTAGTAGGAGATGTACCCATTCAGGATGTGTGCTACAATCCAACCACAAGAAACCTGGTGATTCGTCTGGCTGACACATGTGACAGATCTGAACTCACATCTTTGAAGCCTGAAGAAAAAGCTCTGTTGAAAAATGACTCTACTGGGAAGATGAACGGTGCCATTGTTACAATGAAGGGAGCTCCAAACACACAACCTGGATATGACTTTTATTCCCGTTACTTTGCTCCTTGGTTAGGGGTCCTTGAAGATCCAGTCTGTGGGTCTGCGCATACAGTTCTTGCTGCCTACTGGTCTGAAAAGCTGAACAAAAAGAAGATGTTGGCATATCAGTGCTCCAGTCGTGGAGGAGAGCTGGGGCTGGAGATCAGGGATGATGGTCGACTCAACATCAGTGGTCGAGCAAAAGTCGTTCTTCAGGGAACTCTTAACATCTAGACAACCTGAAAAACCTTCTCACTGAATGTGTTTATAGCTGAATGGAAATACATAAATTTTTTTCCCTAACGATCTTCAAACTGATGTTTCGTTCATTGAATGGACAATTGTGGTTATTTGAGCgccaaaatacaataaaaaaagatgtgctTTTAAAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136081 lncRNA downstream 38410 8267766 ~ 8268073 (-) True G91916
TU136047 lncRNA downstream 83868 8168737 ~ 8222615 (-) True G91891
TU136044 lncRNA downstream 138551 8157258 ~ 8167932 (-) True G91889
TU135912 lncRNA downstream 174635 8131243 ~ 8131848 (-) True G91796
TU135882 lncRNA downstream 265265 7997680 ~ 8041218 (-) True G91769
TU136169 lncRNA upstream 126377 8435026 ~ 8435920 (-) True G91960
TU136183 lncRNA upstream 156432 8465081 ~ 8468983 (-) True G91967
TU136184 lncRNA upstream 160623 8469272 ~ 8471302 (-) True G91968
TU136224 lncRNA upstream 282709 8591358 ~ 8592574 (-) True G92004
TU136251 lncRNA upstream 358847 8667496 ~ 8678386 (-) True G92021
XM_043255665.1 mRNA downstream 635 8303493 ~ 8305848 (-) True LOC122356685
XM_043255667.1 mRNA downstream 3575 8300820 ~ 8302908 (-) True LOC122356686
XM_043255658.1 mRNA downstream 15338 8287539 ~ 8291145 (-) True LOC122356679
XM_043255652.1 mRNA downstream 18964 8256388 ~ 8287519 (-) True psda
XM_043255653.1 mRNA downstream 21651 8256388 ~ 8284832 (-) False psda
XM_043255662.1 mRNA upstream 788 8309437 ~ 8314824 (-) True LOC122356681
XM_043255664.1 mRNA upstream 6540 8315189 ~ 8318815 (-) True LOC122356684
XM_043255656.1 mRNA upstream 15996 8324645 ~ 8337036 (-) False rufy2
XM_043255655.1 mRNA upstream 15996 8324645 ~ 8336065 (-) True rufy2
XM_043255657.1 mRNA upstream 20475 8329124 ~ 8336061 (-) False rufy2
TU135889 other downstream 258582 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1171341 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1175268 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 1915768 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2080750 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 806444 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1877112 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2616295 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2892297 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 3217531 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile