RNA id: XM_043255676.1


Basic Information

Item Value
RNA id XM_043255676.1
length 3243
RNA type mRNA
GC content 0.48
exon number 11
gene id cpeb3
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16488877 ~ 16515704 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCAGCTGTTGAGGCGACTGCAGAGGGGCAGCTCATCTGTCATATCAAAACCCAGGCGAGACAAACAGAAATAGCCTTATTTACAGAATCCCAAAAGGTGAACGATAAGCTCAAAACATGCAGGATGATTTACTGATGGACAAAAGCAAAGCTCAGCCTCACCAGCACCAAGAGCCGTCAAATACAGAGCCCCCATCCACCCCGACCCCCTCCGAGCCTCCGGTCCCGGACGAGCAGAACCACGTCGGTCACAACGAGCGGGTCGCCATGGAGTCTCCGGTGTTACCGGGTTTGGGTTtccctcaggattcctctctcTCGCCGTCGTTCGGCAGCACTTGGTCCACCAACGCCGTGGACGAAGGCTTTTTCCAAGCCGGGATTCCGTCGGTAAACGGGACGATGCTTTTTCAAAACTTTCCCCATCACGTCAACCCGGTGTTCGGAGGTAATTTTTCCCCGCAGATGAGAAGGTCCCCGCTGAGCGTGAACCAGAGGAACCCCTACAGCCACCAGACGCTCATCAATAAAGTGTCCGCGTCGTCCGCGTCTTCGTCCGCCTGGAATAACCACCAGAACGCGGTGTGGAGCTCCGCGGCGAACCCCTGGAGCGGCAGAGACCCGCGGAGGGCGCTCGGGCTCGGCGTCCCGTCTCCGCTCAACCCCATCTCCCCGACGAAGAAGCCCTTCCCGAGCAATGTCATCGCGCCCCCGAAATACCAGAGACCGGGAGCCCTGCAGAAACCCTGGATGATCTCCGAGCCTCCGGAGCCCTTCAGAACcgacaacagcaacaacatgCTGCCATTTCAGgaAAGGAATCGCCCGTTTGACCCATTCAACTTGCAAACTTTGGAGAATTCCTTAATGGACATGATTGGGACAAACCATGACAAAGGTAAACATCACCCTGCTGCTGGCCCACCAATGACTATCGCTGATATTATATGGAGGAATCATTTTGCAGGCCGCATGGGTCTCAACTTTCACCATCCAGTAGCGGAACATATATTACCACTGAACTCCAGGAGCTATGGTCGCAGAAGAGGTCGCTCTTCACTGTTTCCTTTCGAGGACGGCTTCCTGGATGACGGTCACGGTGATCAGCCGCTGACCCCTGGCCTGAACTCGCCCACCCGCTGTCAGAACGGAGAGAGGATGGAGCGCTACTCCAGGAAGGTGTTTGTTGGAGGACTGCCACCAGACATCGATGAGGATGAGATCACCAACAGTTTCCGTCGCTACGGTCACCTGGTGGTGGACTGGCCTCACAAAGCAGAAAGCAAATCCTATTTTCCCCCTAAAGGGTACGCTTTCCTGCTCTTCCAGGAGGAGAGTTCGGTGCAGGCCCTCATTGACGCCTGCATCGAGGAGGATGGGAAACTCTACCTGTGTGTCTCCAGCCCTACTATTAAAGATAAACCAGTCCAGATTCGCCCGTGGAACCTGAGTGACAGTGATTTCGTGATGGATGGCTCTCAGCCTCTCGACCCACGCAAGACCATTTTTGTGGGAGGCGTTCCGCGACCTCTACGAGCAGtggaGCTGGCTATGATCATGGACAGACTGTACGGAGGTGTGTGTTACGCCGGCATCGACACCGACCCAGAACTCAAATACCCTAAAGGTGCGGGCCGAGTGGCCTTCTCCAATCAGCAGAGCTACATCGCTGCCATCAGCGCCAGATTTGTCCAGCTGCAGCATAATGACATTGACAAACGGGTGGAGGTGAAGCCGTACGTGCTGGACGATCAGATGTGCGACGAATGTCAGGGCGCTCGCTGTGGAGGAAAGTTCGCCCCTTTTTTCTGTGCCAACGTCACCTGTCTGCAGTATTACTGCGAGTACTGCTGGGCGAGCATCCACTCGCGCGCCGGCCGTGAGTTCCACAAACCGCTGGTGAAGGAGGGAGGAGACCGACCCCGGCACGTGTCCTTCCACTGGAGCTGATGGCCTCTCCACCCACCGAACACCTTCAGCATCGCTCACCGACCTCCCTCTCACCCTCcgttttcagaaaacaaacaccACGGTATACCTGTCCACTGTATCCCCTGCTTACGGACACTTAGAAAATACGAATTTTGAGTCCGCGTGCTCAGACGTTGCACTTTGGCGCAAACAGTCCATGTTGACGCTTATCGGGATGTTGTGCTTCGATTCTCTCATTATCCTTCATCTGATCGGTTCAGCGCTCCGTATAGATAACGTTAGGCAGCGTGAGACTGCAGTGCATTTGCAAAAagtatctatttttaatttagacttGTCTATATACGCATAGGTAACGCATTTTTGGGTGTCGGACGTTTTAAAGAAGCATGCACTTATTGTGAAAAACAGAGTGGTAGGAAACTCCCCCCTAGAtgacgacaaaaaaaaaaaaaaagttaccaaaggtaaaatgaatattttacaaatatcatGTTTAAGtgagctgttaaaaaaaaaaaaaaaaaaaaaaaaaaacttgagttATTAGAGTAAAACACCATTTGCTCTCCATGTTGAATAGTAATACCTCATGCATGCATCTCTATCTGttcgcttgttttttttttaggcttcATTTTTTTACgagttttttttagtattatctAAAAGTAATGCTGCAATAGCTTTTGCTGCTAAATCCATGGTATGAGTCCATGCCGTCATACTTTATTCAGGCGAGCGAGCGCTCCGAAGGGTCTGCGTCTGCGTCTGCATGCTAAACGAGTCTGCGATGCATGCTGTAAAATCGGGTCTCGCTTTCATTTCCCCCCACGATGGAAGCACTGTGGAAGATTGCTTCctccacagaataaaaaatccAAAAGGTAGTTGCAAATCATTGTTagatatatagttttttttacgttgttttctttatttatatttgacaatctgacttttcttttcaaaattgtGAAGATTTTCTAAATTGATCattgaaattgaaattctaaaagcagaattgatgtgaaatgaaatgacaatGAGGTAAAACTGCgattctgagaagaaaaaaatctcgATTCTGAAATACATCGAGAAAATCgcgagataaaaagtcacaattacatctctctttttttatttatttttgtttgtattcattttttggtgaagtcagaattgtgagacatAAAGTTAAAATTCTGTCTCGCTATTTTGACTTTTTCCCTCACAATTTTAAGACCAAGCTCAGAACTGTAAGGAAAAATTGTGatattacttgaaaaaaaaaaaacatcatctt

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252311.1 lncRNA upstream 107801 16361672 ~ 16381076 (+) True LOC122356350
TU139569 lncRNA downstream 1109 16516813 ~ 16518826 (+) False G94324
TU139619 lncRNA downstream 25481 16541185 ~ 16542938 (+) True G94361
TU139623 lncRNA downstream 42132 16557836 ~ 16558137 (+) True G94365
TU139677 lncRNA downstream 225763 16741467 ~ 16796842 (+) True G94397
TU139793 lncRNA downstream 370380 16886084 ~ 16925137 (+) True G94481
XM_043255671.1 mRNA upstream 19384 16448734 ~ 16469493 (+) True ide
XM_043255670.1 mRNA upstream 19384 16448904 ~ 16469493 (+) False ide
XM_043255807.1 mRNA upstream 56868 16422784 ~ 16432009 (+) True opn3
XM_043256130.1 mRNA upstream 98762 16381358 ~ 16390115 (+) True cdc42ep3
XM_043254967.1 mRNA upstream 156212 16327857 ~ 16332665 (+) True LOC122356348
XM_043256177.1 mRNA downstream 48604 16564308 ~ 16570793 (+) True mlh1
XM_043256179.1 mRNA downstream 77596 16593300 ~ 16594640 (+) True mrpl14
XM_043255698.1 mRNA downstream 104578 16620282 ~ 16826870 (+) True cdh23
XM_043255699.1 mRNA downstream 104578 16620282 ~ 16826870 (+) False cdh23
XM_043254574.1 mRNA downstream 318586 16834290 ~ 16867531 (+) True smoc2
TU139427 other upstream 584528 15903946 ~ 15904349 (+) False nkx1.2la
TU139358 other upstream 611455 15873444 ~ 15877422 (+) True G94186
TU139356 other upstream 612199 15874271 ~ 15876678 (+) False G94186
XR_006252368.1 other upstream 618252 15864839 ~ 15870625 (+) False hps1
TU139570 other downstream 123 16515827 ~ 16518826 (+) True G94324
TU139572 other downstream 123 16515827 ~ 16516759 (+) False G94324
TU139571 other downstream 163 16515867 ~ 16516759 (+) False G94324
TU139637 other downstream 82077 16597781 ~ 16605383 (+) True G94378
TU139910 other downstream 1044592 17560296 ~ 17575938 (+) False G94564

Expression Profile