RNA id: XM_043255686.1


Basic Information

Item Value
RNA id XM_043255686.1
length 2628
RNA type mRNA
GC content 0.46
exon number 18
gene id hps1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15864839 ~ 15871816 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTGACTCGCGCgcgcgcacgcgcacacacgcatcGCGGAAGCTCCGCCGTAGTTCGCAGTTGGCAAACTGTTTGTTATTCTGTGATTCACAAACTGGATCAGGATTCGTGCGCGATGGTGCTCTACTGTTCTAGAAGTGAACCTTAAAATAGTAAAATGAAGTGTCTTCTGGTGGCCAATGAGAGTGCAGAGGTTCTGTTCTACTGGACTGACACTGAGTTCGAGCAGAAGACTCAGGAGCAGTATGGAGTTTCCCAGGAGGAAGGAGAACGACTGCCTGCGTTTGAAGACAGCATTAACACTCTCTTCGCACCCATCATCATCTCCTGTAGCACCATGGTGGACCGACTCGGGGACAATTACACTTCCTTCAGCACAGAAAACAATCATATCTATGTTCTGCATCAGTTTGATGAATGTCTGTACATCGCCGTGAATGGAGACGGAGATGAGACCGAAGACGATTTGAAGAGAAAGATCTATGTGATAAAGAAACTCACAGAAATCATGTTTGGCATGGTGACGTGCAGTGGTGCCCTCTTGAGGAAAGAaTTGCGCCCTCAAGACACAGAGCAAAGGAACCGCTTGTGGATGAAGCTACGAAGCCTCTTGGAAACGTACAGCCACTTAAGGGTCAACGATCAAAGCTTTTTAGTGGAGGCGGTGGAGAGGTTGATCCACCCGACCCTTTGTGAGCAGTGCATTGAGTTTTTGGAGCGTCGTCTGGTGCAGCAGATCAACAGCAACATGGATAGAATGGGAGAGGAGGTGCTACACGCTTTCATACTGGTGAACACCAAACTGCTGGCCTTCTACTCCAGtcgAAATGCCAGCAGTCTGCACACCTCTGATCTCCTGGCTCTGATCATCCTGGTGCAAGATCTCTATCCCAGCAAAATCGACCTAGATGACACATCTGAGGAGTTAGAGAGCAGTTCAGTCCCTGATGTTTTCTACACACCTGAGCCCTCTCCTCCTGAACGGGAATCAGTGCGACCAAGAGGTGACAGTCCTCCTGTCTTCCAGTTTGTAGATCCTGACGTTCAGATGGCCGAAGACAGTCTGCAAACTCTTGAAGCTCCAACCCCTGACCTTTCAGCCCCATTCAGGGTATTCCTGGAAACCAAAGAGTGTCCCATGATGCCTCACTCCATGTATTGCCTACCTCTCTGGCCTGGAATAACTCTAGTGCTGCTCACCAAGATACCCAACAGTCATGTGGCAGTATCTTTTTTCTACATCCTGGAAGCTTTTGTGAAGTTAGAGAAGAGGTTGTGTGAGGGACATGAAGGGGCCGCAGCCATGCGGGGTCAGCCCTCTGTCCAGGAGCAGCGGAGCAGACTGGAGAAGTTAATCAAAAGCTGTGCCAGTATGGACGTTCAGacCTCCCAACTCCAAAATGCATGGACAGACTTCAAGAACAAGGCGTTCAGCAGATCAGGATCTGGATTCACAAGAGATTTGCTGACCTTGTGTCGAAACATGAAGACTCAACTGTGTGGAGTGTATAGGCTGTTTTTTGCAGCTGAGTGCATGGGCAGCAGTCAGCGATTGGCTCCTCATCTGCAAGAACGAGCGCTGAGCATGGTCCAAGAGAAGTTAATGGACTGGAAGGATTTTCTGCTGgtgaaaagcaaaagaaatatCACAATGGTATCATATCTAGAACAATACCCCGGTCTCATCCACTTTATCTACGTGGACCGTTTAGATGGTCAGATGATTGCACCCTCCCTAAACGTGACAGATCGCACTGTCTCTGAGCTCGGAAAGGGGCCTCTAGCTGACTTCATAAAGAACAAGGTTTGGAGCCTTGTTGCAAAAGCACAGCGGTACCTGCAAAAGGGTTACACCACCGTGACGCTCCGGGATGGCGATTACTTCTACTGTTACTTCCTGTGGTTTGAAAATGAAACGggtTACAAACTGGAAGTGATAGACATACCCAGCTCCTCAGATGATGCCGCACCAGTAGGAATGCTCACCTGTGATTATTACAGGAAGCTGCTGCGGTATTACagcaaaaaacatcaaaatgagGTGGTGAAGTGTTATGAACTGTTCACTGTGCATCTGGGTGTGATCCCCAATGAATATATTCTTCAGCACTGCAGTCAGCTGGCCCGTAAGCTGTGGGAGCCCACCCGTATCCCGCTCTTGTGACCAACATGGCCCTCAAAGGATTATGCTCCATACAGCCGTGTTCACATTATTTATGATCTGTAATCTATGTggagagttttttttattacagataaGGTAACTGCAAGAAATATTGTCAGGTAGCCAAACACTGCACTTCTTATACTTACAATCTGCAAGGAAACATTCTTAAGGTGCTTCTAATTCAGAAATGTGTCTGCTATTAACAGATTATTTTAAAGGCAGCAGCTCCTTTTAAAGATGGTACTGCCCAGATTTTATCGGGTATCTGGCTCAACAATGTTAGCAGATatacaaaactgtatttaaataaaataatctaaatatataaataaatagatatatatataataatatataaataagtctAGAGGACTGACTTTCATAATTATTGACTGTTTTTATCAGTATTTACTCAGTGACAACAAAACGTATAAATAAATTGCCCCctctcaaaaaaaaa

Function

GO: NA

KEGG:

id description
K20193 HPS1; Hermansky-Pudlak syndrome 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139336 lncRNA upstream 76609 15774767 ~ 15788230 (+) False G94176
TU139337 lncRNA upstream 85398 15774767 ~ 15779441 (+) True G94176
TU139334 lncRNA upstream 90444 15773969 ~ 15774395 (+) True G94175
TU139333 lncRNA upstream 100265 15764340 ~ 15764574 (+) True G94174
TU139332 lncRNA upstream 102872 15761692 ~ 15761967 (+) True G94173
TU139357 lncRNA downstream 2455 15874271 ~ 15876091 (+) False G94186
TU139362 lncRNA downstream 2455 15874271 ~ 15876678 (+) False G94186
TU139363 lncRNA downstream 2455 15874271 ~ 15876678 (+) False G94186
XR_006252301.1 lncRNA downstream 27055 15898871 ~ 15914946 (+) True LOC122356273
TU139426 lncRNA downstream 29933 15901749 ~ 15901956 (+) False nkx1.2la
XM_043254639.1 mRNA upstream 3377 15797433 ~ 15861462 (+) True hpse2
XM_043254640.1 mRNA upstream 3377 15800089 ~ 15861462 (+) False hpse2
XM_043255334.1 mRNA upstream 91294 15764954 ~ 15773545 (+) False got1
XM_043255333.1 mRNA upstream 91294 15766275 ~ 15773545 (+) True got1
XM_043254818.1 mRNA upstream 141096 15714193 ~ 15723743 (+) True slc25a28
XM_043255736.1 mRNA downstream 5698 15877514 ~ 15888102 (+) False ankrd2
XM_043255735.1 mRNA downstream 5698 15877514 ~ 15888102 (+) True ankrd2
XM_043255734.1 mRNA downstream 5698 15877514 ~ 15888102 (+) False ankrd2
XM_043254802.1 mRNA downstream 29724 15901540 ~ 15904909 (+) True nkx1.2la
XM_043256055.1 mRNA downstream 45016 15916832 ~ 15966825 (+) False prkg1a
XR_006252400.1 other upstream 550560 15295849 ~ 15314279 (+) False tarbp1
XR_006252370.1 other upstream 589605 15255074 ~ 15275234 (+) False fam135a
XR_006252421.1 other upstream 638656 15106458 ~ 15226183 (+) True LOC122357077
XR_006252357.1 other upstream 1497704 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1955236 13739607 ~ 13909603 (+) True G93613
TU139358 other downstream 1628 15873444 ~ 15877422 (+) True G94186
TU139356 other downstream 2455 15874271 ~ 15876678 (+) False G94186
TU139427 other downstream 32130 15903946 ~ 15904349 (+) False nkx1.2la
TU139570 other downstream 644011 16515827 ~ 16518826 (+) True G94324
TU139572 other downstream 644011 16515827 ~ 16516759 (+) False G94324

Expression Profile