RNA id: XM_043255689.1


Basic Information

Item Value
RNA id XM_043255689.1
length 1995
RNA type mRNA
GC content 0.49
exon number 11
gene id bsdc1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18119711 ~ 18126476 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAACGCGgtgtttataaatattgttttgacgCGCTGGTGAGGTCAGAGTTCAGGCCATACCGATGTCGTCATGCGCTGAAGATGGCAGACGGGGAAGGAGGATGGTGGGGAGGCTGGCTGACACAGAGCTTCCAGGCCGTCAAAGACAAGTCAGCTGAGGCGTATGAGTTTATCAAACGGGACCTGACAGAATTCTCCAGTGTGGTCCAACATGACACGGCATGCTCCGTTGTTGCAACAGCGAATGCCATTAAGAGCAAACTGGCAGTTGAAAGTTCAACAGAGGCCACTGAAAAGGTGAAGAAGGGCCTTTCGAATATTTTGGGGGTGATCACAGACACTTTGGCCCCTCCCCCAGACAAGACCATCGACTGTGACGTCATCACGCTGGTAGCCACTCCGGCAGGTACAACAGAGGTGTACGACAGCGGCAAGGCTCGACTCTACAGTCTTCAAGCAGATCCCGCTACATACTGCAATGAGCCTGATGGCCCTCCGCAGCAGTTCGATACCTGGTTGTCCGGTTTCACACTGGAAGAGAGGAAAGCCGAGATCTCTGAACTGCTGGTCAACAGCCCCGCCATAAGAGCTCTTTATACTAAAATGGTGCCGGCAGCAGTGGCTCATTCAGAGTTCTGGCAGCGGTACTTCTATAAAGTGTTCCAGTTGGAGCAGGAGGAGGCAAGGAGAGTAGCGCTGAAGCAGAGAGCAGAGCAGACGGATCATTCTGAGAGTCTTGGTtgggaagaagaggaagaagaaggTGAGTTTCTCGGGGCCACGTCTTCATCTCGCTTAGACTTCACGCCGCCTGTCGAAGAGGCATGCGTCCCTTCGGTGAGGATAGAGGCCACCCCTGAAAGCTCCTCACCCTCTCAAGTGGTGGTTTCCTCCAGCAACGCAGCATCTGACGTCACACCCTCCGTAAGCAGCGACAGCGTTAGTTTTCCCACCCAGATCGAGAATCAAGCGGACTCCGTCACCATCCGAGTCACGCAGCCGTCGCCCGCTGCAGACGAGGTCTCTCAGAAACTCTCAGAGGCCAGTCTACAGGAGACGTGCCCAGAGGAGCGGCCCTCACAGCGTGAAGAAGGAGCTCAAGACCTCCGAGTGTTCGAGCTCAACTCGGACAGCGGCAAATCTACACCCTCCAATAACGGCAAGAAGGGTTCGAGTACAGATGTGAGTGAAGACTGGGAGAAGGATTTTGATCTGGATATGACAGAAGAGGAGGTTCAGATGGCTTTGTCTAAAATGGACGCAACAGAAGAGTTGGAAGATGAGGACTGGGAGAACTGGGAGTGAGAATCTGGTGGAGGGAATTTTGACCCGATATCGACATGAGACGTTGCTCTTCCCAAAGTGAACCatgcttaatataatatatatagactCCTAGTCTACGGCCACACCTGCTCATTCGACCAGCCCAGTGAGCAGGTCACCTCCTGCCGATCACATTTACACGCTAGCTAAACACATGTCCACCGAGCAGTGATCTGAAGTGGGAAGAGGTGATCTGTTCTCCTTCCGGCTGTCCTAAAACATGACCTGAAACACTAAGACTGATCAGAGAAAGCATGTATCGGTTAATGAGGAGAGGTCATCATTTGTACCTGCCGTATGTACATTAATGTTATTCTTCTTTGGAGATTTCAGTGGGAGAATGCAAATTAACTGCCGGGGCTCCCGATTAGCTGTAATCTATTAAGATGTTCATCATTCTTACAGGATTAGAAAGCAATCCTTCACATGAAAAATATGTGTAagttatggtttttttttttcttttcgcaTTATAGGCTTCTTTATTTAGCTTCTCTTGAAACGCTAACACCTTTAATCTTATGCAAGTTATTCTAGCATTGAGAATGGATATGGAGGATGCTTCATTCATTCTGCTGATGCTCCATGGCCTTGTTCAGTGTTGTgtggaatggaaaaaaaaaaaaaaagtgctttcacTAAATACACCTGTTGTTCCAGTGCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140025 lncRNA upstream 229810 17889654 ~ 17889901 (+) True G94637
TU139885 lncRNA upstream 874742 17212947 ~ 17244969 (+) True G94543
TU139822 lncRNA upstream 1089636 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA upstream 1090111 17021864 ~ 17029600 (+) False G94501
TU139800 lncRNA upstream 1181057 16926914 ~ 16938654 (+) True G94484
TU140151 lncRNA downstream 35501 18161977 ~ 18162280 (+) True G94741
XR_006252355.1 lncRNA downstream 136832 18263308 ~ 18264596 (+) True LOC122356621
TU140164 lncRNA downstream 137048 18263524 ~ 18270603 (+) True G94750
TU140167 lncRNA downstream 247087 18373563 ~ 18375173 (+) True G94753
TU140208 lncRNA downstream 393164 18519640 ~ 18519911 (+) True G94785
XM_043254717.1 mRNA upstream 6233 18083502 ~ 18113478 (+) True olig4
XM_043256059.1 mRNA upstream 46610 18045897 ~ 18073101 (+) True LOC122356940
XM_043254813.1 mRNA upstream 76528 18037537 ~ 18043183 (+) True LOC122356284
XM_043255930.1 mRNA upstream 82847 17996931 ~ 18036864 (+) True ldlrap1b
XM_043255929.1 mRNA upstream 82847 17996931 ~ 18036864 (+) False ldlrap1b
XM_043255908.1 mRNA downstream 133721 18260197 ~ 18261280 (+) True LOC122356837
XM_043255909.1 mRNA downstream 138151 18264627 ~ 18267834 (+) True LOC122356838
XM_043256068.1 mRNA downstream 241838 18368314 ~ 18371353 (+) True LOC122356945
XM_043255004.1 mRNA downstream 617530 18744006 ~ 18771823 (+) False tmem63ba
XM_043255003.1 mRNA downstream 617531 18744007 ~ 18771823 (+) True tmem63ba
TU139910 other upstream 543773 17560296 ~ 17575938 (+) False G94564
TU139911 other upstream 557463 17560296 ~ 17562248 (+) True G94564
TU139637 other upstream 1514328 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 1600885 16515827 ~ 16518826 (+) True G94324
TU140175 other downstream 312697 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 410416 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 418876 18545352 ~ 18631718 (+) False G94776
TU140499 other downstream 1029820 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 1430673 19557149 ~ 19589504 (+) False foxn2a

Expression Profile