RNA id: XM_043255693.1


Basic Information

Item Value
RNA id XM_043255693.1
length 2108
RNA type mRNA
GC content 0.56
exon number 2
gene id irf2bp2a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20101059 ~ 20103872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCGCATGCGCCGGAGGGGGAGTTCTATCGAAGAATCAAGTAAATAGAATCGGAGCGTCCGTGACGTCACCGCTCCACATTGAGCTCCGGTCTGGACGCGGTagtagtgagagagagagcgcgagcgAGCGAGCGTCGTAGTAGTAAAGCGCACACTACTATGAAGTTCTGTTCGTAACTCAATTATTACTCGAGAGGAGCCTACCTCGTTTTCCCGCGAACATTTCCGACAGGATTGCGCTGCACTTCGGAGGGTTTTCCGCCTAAACGAGCGATGTCGTCCGCGGCGGTTCACGGTTCGAGGAGGCAGTCGTGTTATTTGTGCGACCTGCCCCGCATGCCGTGGGCTATGATCTGGGATTTTACCGAGCCCGTTTGCAGGGGATGCGTGAACTACGAAGGAGCGGACAGGATCGAGTTTGTCATTGAAACCGCGCGGCAGCTCAAAAGAACCCATGGATTTCAGGACGGCAGACCGGCGACGAAACCGTTGTCGGGGAAGGAGATCCAGGCGTTGAATCACGCGTCTGGGGAGCCGGTTTCGCGTCCGCCTCAGCCCTTGGACCGTTACCCGCTGTCCTCGGAGCGTCCTCCCAGACTGGGACCGGAATACCAGTCCGCGCGGCAGGCGAACGGCATCCCGGTCCCGAACGGATTCTCGAAACCGGACGATCCTCCGGAGCTCAACCGACAGAGCCCGAACCCGCGCAGGACTAGCGGCGTGCCGCCCAATTTAGTGCCTCTGGTGAACGGCAGCATGGTTCACGCGATCAACGGCAGACCCGGTCTCGGCCCCGCCGACCTCGGCGGGAACAAGCGGCCGGCCTCGGTCTCCAGCACCGAGCACGACAAGGACAAGCTCCGACCGGACAGCCTGACGCCGGAGATCAGCGACGGCCACAAAACTCGCGCGGACGAGTGGATCAAGAGCAAAGCGTCCCGGGATTTAATGGCGCTCAACGCGTACGACCCCAGATTTAAGAAGGAGCACATGCAGCAGAGAGTCATGTACGAGCCAAACCCTCCCGCGTCCAAATCAGATCGAGGCAAACATCCCAAGAATCTGAAGAGAAAAGCCTCGCCTGAGCCGGACGGGGAGGGCGGCACCGCCGCCAAGATTAACGGAGACGGACAGCAGTGGCTCCCGGCGGGAGACGGATTGAAGATGCCCCCGGTGCCGCCGCCCAGCTTCGCCTCCCCGCCCTCCACGATATCCCCTCACCCGCGCACCACCCCGCCGGAGGCCTCCGCCCAGAACGGAAGCTCGCCCATCGCGGCGCTCATCCTGGCGGCGGACAACGCCGGCGGGAACAGCTCGCCCAAGGACGCCAACCAGGTGCACTCGACCACGCGCAGGAACAGCAGCAGCCCGCTTTCTCCCAACCAGCGGCGGCTGGCGCAGGGCCCCGTGACGCCTCACGTCCCCGGCATCCCGGACTCCTCGGTTCCCAGCAGCATCCCGCTGTGCTGCACGCTTTGCCACGAGAGGCTGGAGGACACGCACTTCGTGCAGTGCCCTTCGGTGCAGTCTCACAAGTTCTGCTTCCCTTGCTCCCGGGAGAGCATCAAACTGCAGGCCGCGAACGGAGAAGTGTACTGTCCGAGCGGCGAGAAATGCCCTCTGGTGGGCTCCAACGTACCCTGGGCTTTCATGCAAGGCGAAATAGCCACCATCTTGGGAGGAgaagtaaaaaaagagagagacacttGATTGCGAAAATATTCTggtctatataaatatataaatatgaatatccCATGCATACCATCCAGACAGAAACTAACGGACTTGTATATAATGGACATGAGGGACATGCATACTTGGTAAACAttgctgtacatttttttgattttttgaatacattgtgtttctatattttttgaAGATAAAAAGGTATGTACTTATTATAACGGACTACGTTCTTCTTTGTCGATGTTTAACGATTTTCTTGATGTACTTTTAGGTATGGTGGCAGTTCCTGTTAAACGTAGAATGTGACTAATGCAACTCTACGAGCACTTGGCAAAACATTGGAAAACGCTTCTAGCTGTACTTGTATGCACTTGTTTAAAATTTgccaaatacattttctgatcTTGTATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141188 lncRNA downstream 25122 20075371 ~ 20075937 (-) True G95469
TU141149 lncRNA downstream 179419 19921002 ~ 19921640 (-) False LOC122357123
TU140781 lncRNA downstream 254525 19846301 ~ 19846534 (-) True G95190
XR_006252305.1 lncRNA downstream 265406 19818053 ~ 19835653 (-) True LOC122356282
TU140737 lncRNA downstream 430728 19669709 ~ 19670331 (-) True G95147
XR_006252294.1 lncRNA upstream 4319 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA upstream 10854 20114726 ~ 20140686 (-) False LOC122356209
TU141230 lncRNA upstream 132806 20236678 ~ 20238227 (-) True G95506
TU141232 lncRNA upstream 160854 20264726 ~ 20275256 (-) False LOC122356211
TU141247 lncRNA upstream 410901 20514773 ~ 20515311 (-) True G95519
XM_043255837.1 mRNA downstream 64586 20025669 ~ 20036473 (-) True LOC122356780
XM_043255838.1 mRNA downstream 64586 20027304 ~ 20036473 (-) False LOC122356780
XM_043255834.1 mRNA downstream 64586 20027304 ~ 20036473 (-) False LOC122356780
XM_043255839.1 mRNA downstream 64586 20028487 ~ 20036473 (-) False LOC122356780
XM_043255833.1 mRNA downstream 64586 20028487 ~ 20036473 (-) False LOC122356780
XM_043255630.1 mRNA upstream 38677 20142549 ~ 20145468 (-) True tomm20a
XM_043255557.1 mRNA upstream 46586 20150458 ~ 20218900 (-) True arid4b
XM_043256232.1 mRNA upstream 141615 20245487 ~ 20264253 (-) False b3galnt2
XM_043256231.1 mRNA upstream 141615 20245487 ~ 20264250 (-) True b3galnt2
XM_043254718.1 mRNA upstream 160913 20264785 ~ 20275386 (-) False LOC122356211
XR_006252356.1 other downstream 193997 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1428166 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1428166 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1428166 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 2381353 17719634 ~ 17719706 (-) True trnav-aac_26
XR_006252430.1 other upstream 39724 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 376053 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 377571 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 384913 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 389770 20493642 ~ 20496864 (-) True G95511

Expression Profile