RNA id: XM_043255711.1


Basic Information

Item Value
RNA id XM_043255711.1
length 5370
RNA type mRNA
GC content 0.48
exon number 21
gene id fam135a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15255074 ~ 15275234 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGATAGGAACCGGCGTTGTACCGGCTTGTGTGAGCGCCTCCCTTAAAACTCACTCTTACAAGACACAAAACACAAGTTTGGACAATATTTACGATCTGCCGCTGACCGTATGGAGATGTGATCCATTTTTTTCCATCCACTCTGACCGATCCGTCGTTTTAAGTCCGCTGTGAAGACGGAGCCGTAAGGGAATTTTAAACGGCATGCCGAAGAATTAAGCAGCCGGGTGATCGGAGCGTCGAGGGCTGGATCACTCTGAAATTGAACCCGCGGATTGAGGCCTAATTTCCGAAGCGGATACATGGTTGTGTTTATCAGTTGACATGAGGAGAGAAGATATTAAACCGAGTAAGGACGGTTTTGCTGCCGATCGTTTGAGACAGGCCCTCCTCCAGCCCTGAAGCCAGCATGACGGAGGTCCAGGCCACAGTGGAGTTCTCTGTGGAGCTCCACAAGTTCTATAATGTGGATCTTTTCCAAAGAGGGTTCTATCAGATCCGAGCCAGTATGAAAGTGCCGCCACGGATCCCGCAGAGAGTAGAAGCCAGTCTGCTGCATCCcatagGTTCGCATCTGGCTTTTCCAGCATCAGTCCAGGATGACGTGGTCTGCAGCAAAACCTTTCAGatactttataaaaatgagGAGATTGTAGTCAACGACGTCCTTGTGTTCAAAGTGATGATGCTGCTAGATGCAAAGAAGGTGGAAGAGTCCTTAAATGAAATGGACTTTCAGCTGTCGTTGGACCTGTTCTTTACCGATGGCGACTACTcGCCCGAGGACCCAAGTTCTCTCCAGAGCATCAGCAGTCGAACGCTGCGTTTGCACTTTAGCCTCCACAGAGGCATCCACCAGCATGTCAACGTCATGTTTGACTACTTCCACCTGTCTGTCATCTCTGCCACTATCCACGCATCACTGGTGGCCCTGCATCAACCTCTAATCAGTTTCCCACGGCCAGTCAAAAGCACCTGGTTGAATCGTAACGCTCCGGCACAGAGCAAAGACTCTCTCATCCCAACTCTGGAGTCTGTGGTATTCGGCACCACCTACGTCAAGCAGTTGTCCCCAGATGGCAAAACCTTCCTGGTATCAGATCAGTGCCTACAGCACGCCTTCAGCCTGCACCAGAACATGTGTGCCAGCTTGCTGCAGGCATATCAGGGCCTGTTCTGCTATTTAACCTCCCTGACCAAGAATCTTCCTGCATCCCAGCGCATAGAACTAGaggaACTTGATGTGGAGACCCGACTTAATGAGCTTTGTGAACAAGTCAAGCAGAGGGCAGAGAGCCCAGATGAGTTGGCTGAACTGGTGAACATGAATTTGGCACAGCTGTGCTCTCTGCTCATGGCATTGTGGGGGAATTTCCTGGAAGTGGTGTCCCTGAATGAGCGGGTCTCTGCACTGTTGGCCCAGGAGCACCATACAGTACGGGTGCAAAGATTTGCAGAAGCTTTCTTTTGTCTTGAACACCCAAGACAGAGTGCTCTGGCCTACCAGGAACTGCATGCTCACAGTCACCAACAGATGACCACAGCTATCAAGAACTCCACCTACTTCTTGTCCTTGCCACCTCTTCCTGTTGAATGTGCTGATCTCGATGGAGATGTGAACTCTCTACCAATCATCTTTGAGGATAGATATTTAGAATCAGTTACTGAAGATCGCGATGGTCCATGGCTTGGTCTCCACAACACCAGGAGCAGCTCTGTGTCCACAAAAGCAGACAGGTCCAACTCAAAGGACTGCATTGCTAGTGGATTGGGAGGCATCGGCCCATACTCGGATAAACAGCAATCTGCCCTCGCCACGGCTTGGCCTGAACAGAATGAGCCTCCCCTCAAATCCAAAGCCAAATCTATCAAGCTAAAGAAGAATGCAAAGACTGAAAATTCAAAGAAGCTGATCAGGCAGAGCTCGAAAGACTCAGTGGTCCTCACAGGCTACAAGAACTTGAAGGTTCCTCATGGTGAACCGACCACCAAGTCCAAAGAAGTTGACGTTCAATGCAATCCGAAAGACGAGCTAGATGATGGAATCAAATACAGCCACCAGAATGAAACTGCAACCACGCATTGTGCTCAGAATACTAAACACTGCACCACAAGCGACATTCAAGGCAGCACCGGCATCCAGAGCGATAGCTTTTCCAATCTTTTGAGTTTGCAAATGCAGGCTAGGCCCCAGGCAGGTACTGGAGCAGAAGCCACACAAAGCGCAGCTGCCAGAATTGAATCGACACATCCCCCCACTGGGCTCAGACATATTGATGTCAAACCGAATGACAAGGACCCCTACCAGGGCGATAAGGTCACCATTCTCTTACCGCACCACTCTGATCCAACCGACAAGAGGGATGTTCCAGAGATCACACAGACCGATTTCTCTGAGTTCAAGAGCCGAGTCGGGGATGGTGCCACGTTCGTCGGAGCTTGTGGAGCTGCCTTGAGAAGTGATTGTGTTCCTCAAGCTTCCTCCAGGCTCTCAGACTCAGGAATCGAGAGCGAGCCCAGCTCTGCAACACAGTTAGCACCGGTTTCTCCATCTCCTTTTGCGAATACTAGCCTGGAGGCACCTACAGAGCCTATTCTGCAGAGTGCCCACCAGAGACCATCTCCACTCAGCCCGGCCTCCAGAGCCACCACCTTGGAGGCTCTCAATCCAGAGAGCACTAGTGGCATCAGCGGAGTTCAGTCTTCCCTCACCTCCATTAATTCGCTCCCCTCGGATGATGAGGTGGAGACGGAGGTCACTAGCAGAAAATCCAGCATCCTGGTGCAGGAACAGAGCCTGATATTTTCAGGAGAAACTCATAGCCTACCGTTATCAAGCTCTAAAGTTTTGACTCAACAAAAAGCCTCTATCAGTCATAGAGATGGGCTGGTGTCTTACAATGAGGACTCTGCTATCCAGCCCCGCTGTGAAACTAATGTTCCTGACAGGCTGACAGGATCTAATGAGATTGATCTTCCAGGTGGTGCAGCTTCGGGGCCAGAAGCATGTAGTGAGCCTCAGACGGCTGCCCAGTCCAGTACATCGGTCACAAGCAGCACGGACCTGGTAAAGAAAGGCTTTGTGGAGAACTACTTTGGTTCACGTTCCAGCACTGATGTATCTGAGATCAGCCCGTTAGAGACTGCAGCTGTAACGCTGGGGATTCAGACTAGCCTCAATCCTAATGACGAAGAGGATGAGGACGAAGAACAGGAACATGAGATGATTGAGAATGGTTATTATGAGGAGACAGATGGGCTGGTTTATGTTAATGGACTCCCCGGGGAGGATGGAAGTTGCGAGGATGGGGGAGCAGAGGGAAGGACCCTTTTTTATGATCACCTGGGTTTGGAACAGCTCCAGGAAACATACATCCCCTCAGCCGGCCTGCAGACACGGCCTCCCGGACCAGCACCAACCAGCAGCGACATGTGCTGGTACAAGAGCGCCCCCACTGCCCAGATGACAGCGTTTGCCCAAGCAAAAGAGGAGCTGAAGCAACTAAAGTTACCAGGCTTCTTGTACAGCGAGGTGGCAAATCTGGCATCCACTGTGCCGTATTTCAGCATGGATGAGGATGAAAACTGTGACGAGGGCATACACTTAATAGTTTGCGTACACGGTCTGGATGgTAACAGTGCGGATCTGCGTCTAGTGAAGACTTATTTGGAGCTCGGTTTACCTGGAGCTCGTATAGATTTCCTAATGTCAGAACGCAATCAGAATGATACATTTGCTGATTTTGAATCCATGACTGACAGACTTTTGGATGAAATAGTGCAGTACATACAAATCTACAACCTCACAGTTTCCAAGATAAGTTTTGTGGGCCATTCACTTGGAAATCTGATCGTGCGCTCGGTGCTGACGAGGCCCAGGTTTAAGTGTTATCTCAGCAGACTGCACACGTTTCTATCTCTGTCTGGACCGCATCTTGGCACGCTGTATAACAGCTCAGCCCTCGTCAATACCGgGTTGTGGTTTATGCAGAAGTGGAAGAAATCTGGCTCTCTGCTGCAGCTGACCTGTCGCGACCACTCTGACCCACGCCAGACCTTCCTCTATAAGCTAAGCAAGAAAGCTGGCCTTCAGTTCTTTAAGAATGTGGTGCTGGTGGGGTCTCTTCAGGACAGATATGTCCCCTATCACTCTGCTCGAATCGAGATGTGCAAAACAGCCTTAAAGGACAAACAGACTGGTCCGGTGTATGCCGAGATGATCGAGAACCTTCTACTCCCTGTGCTTCAGAACAAAGACTGCAACCTGGTGCGTTACGATGTCATCCACGCGCTGCCCAACACCGCCAACTCCCTGATTGGCAGAGCAGCCCACATCGCCGTCCTGGACTCCGAGATTTTCCTGGAAAAGTTCTTTCTGGTGGCGGGGCTCAAGTTTTTTCAGTAGCCTTGCTAGATCGGAAGCGAATACCTCACTGCAAAACGGACgtttttctgcttctttttttcccccctcacgGTTTTAAGTATGCTATCGGAGGTAAAGCGAAAtatatcagtgttatttttgttgttgatttcgTTTCTATCTGGTCTGTTGTGAATGTGGAACTTacggtttttatttttctactgccatttttttttaatggtctgTTCATTAAGAAAATCAAACCTCCTTGtggtatttttttcagtgttatttatgTACAACGttaatttttaccatttttcatttaacaattcATTCTATTAAACTATCTTATGCTGAACTGGAAATGTAGCtgctaaaaaaaagaatgaactaTTTATTCGGGGTGGAAATCCAGGTCGTTTTCATGGTAAAAGAGCGTTCACTTGAACATTTTGGTATCTGGGGTTGGTTGGCTTGCATCCGAActgcataaaacatattttctattAAGAAATTGCCATTTGActacacattttttacaatttttttttttttttacaacgtcAAAGGCTTCCTGAACCTAGACGAACATGATTGTAGCTGAAACGAAGCAGCCTTGGACCGCGTGTTGGTTTTATACGATGTCTCTGGTGCCCATTGCATTCTCATGCACAATCTCGACCTAGCCTGGAGTTGGGTGGAGAAAACGCACGCTTAGCAtgttagtattttctttttattacagGGGATACAGGTAACAAATGAACAATGGGCCAGGTGTGTGGGCTTAGACGGTTAGTCGGTTTAAAACAGCACAAATACTAGTAATCGAATCACATAGTTGTGGGAAAGTATTTATGTTTGATTTCCTATGGAGGAATTTGTTGATGCTTGTGtgcaaaatactttaaataaaacattggaATTATCCTGTATTTGTTAAAATGGTTTTGTAACATTAACTCcacatttcattaaatgtattcGCAATAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139091 lncRNA upstream 242295 15012550 ~ 15012780 (+) True G93978
TU139077 lncRNA upstream 576476 14678399 ~ 14678599 (+) True G93966
TU138846 lncRNA upstream 636425 14613092 ~ 14618650 (+) True G93833
TU139226 lncRNA downstream 42378 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 48813 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 155064 15430298 ~ 15434168 (+) True G94101
TU139246 lncRNA downstream 159228 15434462 ~ 15453608 (+) True G94104
TU139252 lncRNA downstream 186139 15461373 ~ 15461752 (+) True G94110
XM_043256264.1 mRNA upstream 28353 15106458 ~ 15226722 (+) False LOC122357077
XM_043256261.1 mRNA downstream 3126 15278360 ~ 15295194 (+) False zgc:172136
XM_043256260.1 mRNA downstream 4208 15279442 ~ 15295194 (+) True zgc:172136
XM_043256262.1 mRNA downstream 6811 15282045 ~ 15295194 (+) False zgc:172136
XM_043256048.1 mRNA downstream 20615 15295849 ~ 15314656 (+) True tarbp1
XM_043256049.1 mRNA downstream 20615 15295849 ~ 15307856 (+) False tarbp1
XR_006252421.1 other upstream 28892 15106458 ~ 15226183 (+) True LOC122357077
XR_006252357.1 other upstream 887940 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1345472 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 2038318 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 2666222 12586886 ~ 12588853 (+) False mgme1
XR_006252400.1 other downstream 20615 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 589605 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 589605 15864839 ~ 15869803 (+) False hps1
TU139358 other downstream 598210 15873444 ~ 15877422 (+) True G94186
TU139356 other downstream 599037 15874271 ~ 15876678 (+) False G94186

Expression Profile